RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 RRP1P56182 461 aaKnown RBP11.63□□□□□ -0.55
LINC00558-201ENST00000569422 ANO8Q9HCE9 1232 aaPredicted RBP11.63□□□□□ -0.55
LINC00558-201ENST00000569422 UHRF1BP1LA0JNW5 1464 aa11.63□□□□□ -0.55
LINC00558-201ENST00000569422 TNNT2P45379 298 aaPredicted RBP11.62□□□□□ -0.55
LINC00558-201ENST00000569422 CCDC146Q8IYE0 955 aa11.62□□□□□ -0.55
LINC00558-201ENST00000569422 ASXL2Q76L83 1435 aa11.62□□□□□ -0.55
LINC00558-201ENST00000569422 ATP10AO60312 1499 aa11.62□□□□□ -0.55
LINC00558-201ENST00000569422 TRAK1Q9UPV9 953 aa11.61□□□□□ -0.55
LINC00558-201ENST00000569422 PPP2R1AP30153 589 aa11.61□□□□□ -0.55
LINC00558-201ENST00000569422 RAPGEF3O95398 923 aa11.61□□□□□ -0.55
LINC00558-201ENST00000569422 TMEM132EQ6IEE7 984 aa11.61□□□□□ -0.55
LINC00558-201ENST00000569422 OSCARQ8IYS5 282 aa11.61□□□□□ -0.55
LINC00558-201ENST00000569422 UGGT1Q9NYU2 1555 aa11.6□□□□□ -0.55
LINC00558-201ENST00000569422 CDCA8Q53HL2 280 aa11.6□□□□□ -0.55
LINC00558-201ENST00000569422 CHMP4AQ9BY43 222 aa11.59□□□□□ -0.55
LINC00558-201ENST00000569422 PRDM15P57071 1507 aaPredicted RBP11.59□□□□□ -0.55
LINC00558-201ENST00000569422 ZFYVE16Q7Z3T8 1539 aa11.59□□□□□ -0.55
LINC00558-201ENST00000569422 RNF123Q5XPI4 1314 aa11.59□□□□□ -0.55
LINC00558-201ENST00000569422 RTEL1-TNFRSF6BF6WH68 1400 aa11.59□□□□□ -0.55
LINC00558-201ENST00000569422 MAGI2Q86UL8 1455 aa11.59□□□□□ -0.55
LINC00558-201ENST00000569422 SAFB2Q14151 953 aaKnown RBP eCLIP11.58□□□□□ -0.56
LINC00558-201ENST00000569422 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
LINC00558-201ENST00000569422 SKAP1Q86WV1 359 aa11.58□□□□□ -0.56
LINC00558-201ENST00000569422 WASHC2CQ9Y4E1 1318 aa11.58□□□□□ -0.56
LINC00558-201ENST00000569422 ATP7AQ04656 1500 aa11.57□□□□□ -0.56
LINC00558-201ENST00000569422 E9PCH4 1651 aa11.56□□□□□ -0.56
LINC00558-201ENST00000569422 FANCIQ9NVI1 1328 aa11.56□□□□□ -0.56
LINC00558-201ENST00000569422 PDE3BQ13370 1112 aa11.56□□□□□ -0.56
LINC00558-201ENST00000569422 SCAF11Q99590 1463 aaKnown RBP11.56□□□□□ -0.56
LINC00558-201ENST00000569422 EIF2AK4Q9P2K8 1649 aaKnown RBP11.55□□□□□ -0.56
LINC00558-201ENST00000569422 NEUROD2Q15784 382 aa11.55□□□□□ -0.56
LINC00558-201ENST00000569422 C20orf194Q5TEA3 1177 aa11.55□□□□□ -0.56
LINC00558-201ENST00000569422 CRBNQ96SW2 442 aa11.55□□□□□ -0.56
LINC00558-201ENST00000569422 PTPRTO14522 1441 aa11.54□□□□□ -0.56
LINC00558-201ENST00000569422 CLTCL1P53675 1640 aa11.54□□□□□ -0.56
LINC00558-201ENST00000569422 EIF3AQ14152 1382 aaKnown RBP11.54□□□□□ -0.56
LINC00558-201ENST00000569422 APAF1O14727 1248 aa11.54□□□□□ -0.56
LINC00558-201ENST00000569422 CD109Q6YHK3 1445 aa11.54□□□□□ -0.56
LINC00558-201ENST00000569422 CARD14Q9BXL6 1004 aa11.54□□□□□ -0.56
LINC00558-201ENST00000569422 SLC12A5Q9H2X9 1139 aa11.53□□□□□ -0.56
LINC00558-201ENST00000569422 TRPM2O94759 1503 aa11.53□□□□□ -0.56
LINC00558-201ENST00000569422 STK26Q9P289 416 aa11.53□□□□□ -0.56
LINC00558-201ENST00000569422 NOS1P29475 1434 aa11.52□□□□□ -0.56
LINC00558-201ENST00000569422 HAP1P54257 671 aaPredicted RBP11.52□□□□□ -0.57
LINC00558-201ENST00000569422 PLEKHH1Q9ULM0 1364 aa11.51□□□□□ -0.57
LINC00558-201ENST00000569422 SAMD1Q6SPF0 538 aaPredicted RBP11.51□□□□□ -0.57
LINC00558-201ENST00000569422 STAC3Q96MF2 364 aa11.51□□□□□ -0.57
LINC00558-201ENST00000569422 MADDQ8WXG6 1647 aa11.51□□□□□ -0.57
LINC00558-201ENST00000569422 TAF7LQ5H9L4 462 aa11.51□□□□□ -0.57
LINC00558-201ENST00000569422 CYB5RLQ6IPT4 315 aa11.51□□□□□ -0.57
LINC00558-201ENST00000569422 CENPJQ9HC77 1338 aaPredicted RBP11.51□□□□□ -0.57
LINC00558-201ENST00000569422 GOLGA2Q08379 1002 aa11.51□□□□□ -0.57
LINC00558-201ENST00000569422 NBR1Q14596 966 aa11.5□□□□□ -0.57
LINC00558-201ENST00000569422 RRP7AQ9Y3A4 280 aaKnown RBP11.5□□□□□ -0.57
LINC00558-201ENST00000569422 MORC1Q86VD1 984 aa11.49□□□□□ -0.57
LINC00558-201ENST00000569422 DHX37Q8IY37 1157 aaKnown RBP11.49□□□□□ -0.57
LINC00558-201ENST00000569422 SPINK5Q9NQ38 1064 aaPredicted RBP11.49□□□□□ -0.57
LINC00558-201ENST00000569422 PAK3O75914 559 aaPredicted RBP11.49□□□□□ -0.57
LINC00558-201ENST00000569422 ANP32AP39687 249 aaKnown RBP11.49□□□□□ -0.57
LINC00558-201ENST00000569422 CFAP65Q6ZU64 1925 aaKnown RBP11.49□□□□□ -0.57
LINC00558-201ENST00000569422 TMEM132AQ24JP5 1023 aa11.48□□□□□ -0.57
LINC00558-201ENST00000569422 DUSP27Q5VZP5 1158 aa11.48□□□□□ -0.57
LINC00558-201ENST00000569422 ZNF518AQ6AHZ1 1483 aa11.48□□□□□ -0.57
LINC00558-201ENST00000569422 SPHKAPQ2M3C7 1700 aa11.48□□□□□ -0.57
LINC00558-201ENST00000569422 BCL11BQ9C0K0 894 aaPredicted RBP11.48□□□□□ -0.57
LINC00558-201ENST00000569422 BLMP54132 1417 aaPredicted RBP11.48□□□□□ -0.57
LINC00558-201ENST00000569422 ARAP3Q8WWN8 1544 aa11.47□□□□□ -0.57
LINC00558-201ENST00000569422 ABCA9Q8IUA7 1624 aa11.47□□□□□ -0.57
LINC00558-201ENST00000569422 CABP2Q9NPB3 220 aa11.47□□□□□ -0.57
LINC00558-201ENST00000569422 LAMC1P11047 1609 aa11.47□□□□□ -0.57
LINC00558-201ENST00000569422 INO80Q9ULG1 1556 aaPredicted RBP11.47□□□□□ -0.57
LINC00558-201ENST00000569422 DMRT2Q9Y5R5 561 aa11.47□□□□□ -0.57
LINC00558-201ENST00000569422 NPATQ14207 1427 aa11.46□□□□□ -0.57
LINC00558-201ENST00000569422 NOP58Q9Y2X3 529 aaKnown RBP11.46□□□□□ -0.57
LINC00558-201ENST00000569422 TET3O43151 1660 aa11.46□□□□□ -0.57
LINC00558-201ENST00000569422 ASXL1Q8IXJ9 1541 aa11.46□□□□□ -0.58
LINC00558-201ENST00000569422 BCAR3O75815 825 aa11.45□□□□□ -0.58
LINC00558-201ENST00000569422 IDI1Q13907 227 aa11.45□□□□□ -0.58
LINC00558-201ENST00000569422 ERVK-7P63135 1459 aa11.45□□□□□ -0.58
LINC00558-201ENST00000569422 RNF17Q9BXT8 1623 aaKnown RBP11.45□□□□□ -0.58
LINC00558-201ENST00000569422 FGD1P98174 961 aa11.45□□□□□ -0.58
LINC00558-201ENST00000569422 C14orf93Q9H972 538 aaKnown RBP11.45□□□□□ -0.58
LINC00558-201ENST00000569422 MLECQ14165 292 aa11.44□□□□□ -0.58
LINC00558-201ENST00000569422 PDE4AP27815 886 aa11.44□□□□□ -0.58
LINC00558-201ENST00000569422 SRPK2P78362 688 aaKnown RBP11.44□□□□□ -0.58
LINC00558-201ENST00000569422 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
LINC00558-201ENST00000569422 NSD3Q9BZ95 1437 aa11.44□□□□□ -0.58
LINC00558-201ENST00000569422 PLCB2Q00722 1185 aa11.43□□□□□ -0.58
LINC00558-201ENST00000569422 SLFN5Q08AF3 891 aa11.43□□□□□ -0.58
LINC00558-201ENST00000569422 POGZQ7Z3K3 1410 aa11.43□□□□□ -0.58
LINC00558-201ENST00000569422 BRD2P25440 801 aaKnown RBP11.43□□□□□ -0.58
LINC00558-201ENST00000569422 CANXP27824 592 aaKnown RBP11.43□□□□□ -0.58
LINC00558-201ENST00000569422 FBXO31Q5XUX0 539 aaPredicted RBP11.43□□□□□ -0.58
LINC00558-201ENST00000569422 ZBTB47Q9UFB7 747 aaPredicted RBP11.43□□□□□ -0.58
LINC00558-201ENST00000569422 MROH1Q8NDA8 1641 aa11.43□□□□□ -0.58
LINC00558-201ENST00000569422 CEP152O94986 1710 aa11.43□□□□□ -0.58
LINC00558-201ENST00000569422 KIDINS220Q9ULH0 1771 aa11.43□□□□□ -0.58
LINC00558-201ENST00000569422 DEPDC5O75140 1603 aa11.42□□□□□ -0.58
LINC00558-201ENST00000569422 MTHFSP49914 203 aa11.42□□□□□ -0.58
LINC00558-201ENST00000569422 IQGAP1P46940 1657 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms