RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 NLRP1Q9C000 1473 aa15.25■□□□□ 0.03
CDH3-210ENST00000569117 TNRQ92752 1358 aa15.24■□□□□ 0.03
CDH3-210ENST00000569117 KDM4FA0A1W2PPD8 638 aa15.24■□□□□ 0.03
CDH3-210ENST00000569117 PLCB2Q00722 1185 aa15.24■□□□□ 0.03
CDH3-210ENST00000569117 FBXO31Q5XUX0 539 aaPredicted RBP15.24■□□□□ 0.03
CDH3-210ENST00000569117 TMEM131LA2VDJ0 1609 aa15.23■□□□□ 0.03
CDH3-210ENST00000569117 MYO5BQ9ULV0 1848 aa15.22■□□□□ 0.03
CDH3-210ENST00000569117 UBR1Q8IWV7 1749 aa15.22■□□□□ 0.03
CDH3-210ENST00000569117 SETD1BQ9UPS6 1966 aaKnown RBP15.22■□□□□ 0.03
CDH3-210ENST00000569117 CEP170BQ9Y4F5 1589 aaPredicted RBP15.21■□□□□ 0.03
CDH3-210ENST00000569117 SPATA31E1Q6ZUB1 1445 aa15.21■□□□□ 0.03
CDH3-210ENST00000569117 CEBPAP49715 358 aaPredicted RBP15.21■□□□□ 0.03
CDH3-210ENST00000569117 IFT172Q9UG01 1749 aa15.2■□□□□ 0.02
CDH3-210ENST00000569117 SPDYE4A6NLX3 237 aa15.2■□□□□ 0.02
CDH3-210ENST00000569117 SLC52A1Q9NWF4 448 aa15.2■□□□□ 0.02
CDH3-210ENST00000569117 A2ML1A8K2U0 1454 aa15.19■□□□□ 0.02
CDH3-210ENST00000569117 PPLO60437 1756 aa15.17■□□□□ 0.02
CDH3-210ENST00000569117 SIN3AQ96ST3 1273 aa15.17■□□□□ 0.02
CDH3-210ENST00000569117 UHRF1BP1Q6BDS2 1440 aa15.16■□□□□ 0.02
CDH3-210ENST00000569117 IDI1Q13907 227 aa15.15■□□□□ 0.02
CDH3-210ENST00000569117 NEXMIFQ5QGS0 1516 aa15.14■□□□□ 0.01
CDH3-210ENST00000569117 TONSLQ96HA7 1378 aa15.12■□□□□ 0.01
CDH3-210ENST00000569117 NEUROD1Q13562 356 aa15.12■□□□□ 0.01
CDH3-210ENST00000569117 MYOM2P54296 1465 aa15.12■□□□□ 0.01
CDH3-210ENST00000569117 SLIT1O75093 1534 aa15.12■□□□□ 0.01
CDH3-210ENST00000569117 ARHGAP23Q9P227 1491 aa15.1■□□□□ 0.01
CDH3-210ENST00000569117 TIMELESSQ9UNS1 1208 aa15.1■□□□□ 0.01
CDH3-210ENST00000569117 ZFYVE9O95405 1425 aa15.09■□□□□ 0.01
CDH3-210ENST00000569117 POLR1AO95602 1720 aaPredicted RBP15.09■□□□□ 0.01
CDH3-210ENST00000569117 LMTK3Q96Q04 1460 aa15.09■□□□□ 0.01
CDH3-210ENST00000569117 VASPP50552 380 aaPredicted RBP15.09■□□□□ 0.01
CDH3-210ENST00000569117 PROM2Q8N271 834 aa15.08■□□□□ 0
CDH3-210ENST00000569117 CHGAP10645 457 aaKnown RBP15.07■□□□□ 0
CDH3-210ENST00000569117 RPGRIP1LQ68CZ1 1315 aa15.07■□□□□ 0
CDH3-210ENST00000569117 TMEM2Q9UHN6 1383 aa15.07■□□□□ 0
CDH3-210ENST00000569117 NRXN1Q9ULB1 1477 aa15.07■□□□□ 0
CDH3-210ENST00000569117 MKRN4PQ13434 485 aaPredicted RBP15.06■□□□□ 0
CDH3-210ENST00000569117 STAG3Q9UJ98 1225 aa15.06■□□□□ 0
CDH3-210ENST00000569117 RIMS2Q9UQ26 1411 aa15.06■□□□□ 0
CDH3-210ENST00000569117 LAMC1P11047 1609 aa15.06■□□□□ 0
CDH3-210ENST00000569117 L3MBTL2Q969R5 705 aa15.05■□□□□ -0
CDH3-210ENST00000569117 KIAA1210Q9ULL0 1709 aa15.04■□□□□ -0
CDH3-210ENST00000569117 HAP1P54257 671 aaPredicted RBP15.04■□□□□ -0
CDH3-210ENST00000569117 RGL3Q3MIN7 710 aa15.04■□□□□ -0
CDH3-210ENST00000569117 ZNF326Q5BKZ1 582 aaKnown RBP15.04■□□□□ -0
CDH3-210ENST00000569117 TRPM1Q7Z4N2 1603 aa15.03■□□□□ -0
CDH3-210ENST00000569117 NRXN3Q9Y4C0 1643 aa15.03■□□□□ -0
CDH3-210ENST00000569117 SETBP1Q9Y6X0 1596 aa15.03■□□□□ -0
CDH3-210ENST00000569117 SCAF11Q99590 1463 aaKnown RBP15.03■□□□□ -0
CDH3-210ENST00000569117 PRAG1Q86YV5 1406 aa15.03■□□□□ -0
CDH3-210ENST00000569117 ZEB1P37275 1124 aaPredicted RBP15.03■□□□□ -0
CDH3-210ENST00000569117 THEMISQ8N1K5 641 aaPredicted RBP15.03■□□□□ -0
CDH3-210ENST00000569117 STAC3Q96MF2 364 aa15.03■□□□□ -0
CDH3-210ENST00000569117 IQGAP1P46940 1657 aa15.03■□□□□ -0
CDH3-210ENST00000569117 PIK3C2GO75747 1445 aa15.02■□□□□ -0
CDH3-210ENST00000569117 SETD1AO15047 1707 aaKnown RBP15.02□□□□□ -0.01
CDH3-210ENST00000569117 DCAF11Q8TEB1 546 aa15□□□□□ -0.01
CDH3-210ENST00000569117 RALGAPBQ86X10 1494 aa15□□□□□ -0.01
CDH3-210ENST00000569117 IFNLR1Q8IU57 520 aaPredicted RBP14.99□□□□□ -0.01
CDH3-210ENST00000569117 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.99□□□□□ -0.01
CDH3-210ENST00000569117 DIP2AQ14689 1571 aa14.98□□□□□ -0.01
CDH3-210ENST00000569117 MED14O60244 1454 aa14.98□□□□□ -0.01
CDH3-210ENST00000569117 PLEKHG1Q9ULL1 1385 aa14.98□□□□□ -0.01
CDH3-210ENST00000569117 ADGRF5Q8IZF2 1346 aa14.97□□□□□ -0.01
CDH3-210ENST00000569117 VGFO15240 615 aaPredicted RBP14.97□□□□□ -0.01
CDH3-210ENST00000569117 PPP1R15AO75807 674 aaPredicted RBP14.97□□□□□ -0.01
CDH3-210ENST00000569117 STRCQ7RTU9 1775 aa14.97□□□□□ -0.01
CDH3-210ENST00000569117 HDGFP51858 240 aaKnown RBP14.96□□□□□ -0.01
CDH3-210ENST00000569117 ALKQ9UM73 1620 aa14.95□□□□□ -0.02
CDH3-210ENST00000569117 EID1Q9Y6B2 187 aa14.95□□□□□ -0.02
CDH3-210ENST00000569117 ASXL1Q8IXJ9 1541 aa14.95□□□□□ -0.02
CDH3-210ENST00000569117 LTKP29376 864 aa14.94□□□□□ -0.02
CDH3-210ENST00000569117 KDM2AQ9Y2K7 1162 aa14.94□□□□□ -0.02
CDH3-210ENST00000569117 ADGRB1O14514 1584 aa14.94□□□□□ -0.02
CDH3-210ENST00000569117 NBPF8Q3BBV2 869 aa14.93□□□□□ -0.02
CDH3-210ENST00000569117 NUTM2DQ5VT03 806 aaPredicted RBP14.93□□□□□ -0.02
CDH3-210ENST00000569117 TXNDC2Q86VQ3 553 aa14.93□□□□□ -0.02
CDH3-210ENST00000569117 NPHP4O75161 1426 aaPredicted RBP14.92□□□□□ -0.02
CDH3-210ENST00000569117 ADAMTS13Q76LX8 1427 aa14.92□□□□□ -0.02
CDH3-210ENST00000569117 ANKLE2Q86XL3 938 aa14.92□□□□□ -0.02
CDH3-210ENST00000569117 GPRASP1Q5JY77 1395 aa14.92□□□□□ -0.02
CDH3-210ENST00000569117 HSPA2P54652 639 aa14.91□□□□□ -0.02
CDH3-210ENST00000569117 KNDC1Q76NI1 1749 aa14.91□□□□□ -0.02
CDH3-210ENST00000569117 C14orf93Q9H972 538 aaKnown RBP14.89□□□□□ -0.03
CDH3-210ENST00000569117 ROCK2O75116 1388 aaKnown RBP14.88□□□□□ -0.03
CDH3-210ENST00000569117 BCANQ96GW7 911 aa14.88□□□□□ -0.03
CDH3-210ENST00000569117 XRN1Q8IZH2 1706 aaKnown RBP14.88□□□□□ -0.03
CDH3-210ENST00000569117 ARHGEF28Q8N1W1 1705 aaKnown RBP14.88□□□□□ -0.03
CDH3-210ENST00000569117 NWD1Q149M9 1564 aa14.87□□□□□ -0.03
CDH3-210ENST00000569117 CFAP70Q5T0N1 1121 aa14.86□□□□□ -0.03
CDH3-210ENST00000569117 CHD2O14647 1828 aaKnown RBP14.86□□□□□ -0.03
CDH3-210ENST00000569117 NCKAP5LQ9HCH0 1330 aa14.86□□□□□ -0.03
CDH3-210ENST00000569117 CPS1P31327 1500 aa14.86□□□□□ -0.03
CDH3-210ENST00000569117 PIK3R4Q99570 1358 aa14.85□□□□□ -0.03
CDH3-210ENST00000569117 DLC1Q96QB1 1528 aa14.84□□□□□ -0.03
CDH3-210ENST00000569117 METP08581 1390 aa14.84□□□□□ -0.03
CDH3-210ENST00000569117 TECPR2O15040 1411 aa14.83□□□□□ -0.03
CDH3-210ENST00000569117 YTHDC2Q9H6S0 1430 aaKnown RBP14.83□□□□□ -0.03
CDH3-210ENST00000569117 NBPF1Q3BBV0 1214 aa14.83□□□□□ -0.04
CDH3-210ENST00000569117 VSIG10Q8N0Z9 540 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms