RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 DAXXQ9UER7 740 aaPredicted RBP20.46■□□□□ 0.87
COMMD4-215ENST00000566843 RNF17Q9BXT8 1623 aaKnown RBP20.45■□□□□ 0.86
COMMD4-215ENST00000566843 SAMD9LQ8IVG5 1584 aa20.44■□□□□ 0.86
COMMD4-215ENST00000566843 PREX2Q70Z35 1606 aa20.44■□□□□ 0.86
COMMD4-215ENST00000566843 CDC42BPBQ9Y5S2 1711 aa20.44■□□□□ 0.86
COMMD4-215ENST00000566843 ARHGAP5Q13017 1502 aa20.44■□□□□ 0.86
COMMD4-215ENST00000566843 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.43■□□□□ 0.86
COMMD4-215ENST00000566843 MAST1Q9Y2H9 1570 aa20.43■□□□□ 0.86
COMMD4-215ENST00000566843 RSPH4AQ5TD94 716 aa20.43■□□□□ 0.86
COMMD4-215ENST00000566843 ATP10AO60312 1499 aa20.42■□□□□ 0.86
COMMD4-215ENST00000566843 IQGAP3Q86VI3 1631 aa20.42■□□□□ 0.86
COMMD4-215ENST00000566843 PLCH2O75038 1416 aa20.41■□□□□ 0.86
COMMD4-215ENST00000566843 RGL3Q3MIN7 710 aa20.41■□□□□ 0.86
COMMD4-215ENST00000566843 MAGI2Q86UL8 1455 aa20.4■□□□□ 0.86
COMMD4-215ENST00000566843 PPP2R1AP30153 589 aa20.4■□□□□ 0.86
COMMD4-215ENST00000566843 GOLGA2Q08379 1002 aa20.4■□□□□ 0.86
COMMD4-215ENST00000566843 TRMT2AQ8IZ69 625 aaKnown RBP20.4■□□□□ 0.86
COMMD4-215ENST00000566843 EIF3AQ14152 1382 aaKnown RBP20.4■□□□□ 0.86
COMMD4-215ENST00000566843 VIRMAQ69YN4 1812 aaKnown RBP20.39■□□□□ 0.85
COMMD4-215ENST00000566843 SLFN5Q08AF3 891 aa20.38■□□□□ 0.85
COMMD4-215ENST00000566843 WDR43Q15061 677 aaKnown RBP eCLIP20.37■□□□□ 0.85
COMMD4-215ENST00000566843 PIK3C2GO75747 1445 aa20.36■□□□□ 0.85
COMMD4-215ENST00000566843 EFCAB2Q5VUJ9 269 aa20.36■□□□□ 0.85
COMMD4-215ENST00000566843 ABCA9Q8IUA7 1624 aa20.35■□□□□ 0.85
COMMD4-215ENST00000566843 FRAT2O75474 233 aaPredicted RBP20.35■□□□□ 0.85
COMMD4-215ENST00000566843 AMER1Q5JTC6 1135 aaPredicted RBP20.35■□□□□ 0.85
COMMD4-215ENST00000566843 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.35■□□□□ 0.85
COMMD4-215ENST00000566843 SYNMO15061 1565 aa20.35■□□□□ 0.85
COMMD4-215ENST00000566843 IQGAP1P46940 1657 aa20.34■□□□□ 0.85
COMMD4-215ENST00000566843 SYCP2Q9BX26 1530 aa20.34■□□□□ 0.85
COMMD4-215ENST00000566843 PLXNC1O60486 1568 aa20.33■□□□□ 0.85
COMMD4-215ENST00000566843 KNSTRNQ9Y448 316 aa20.33■□□□□ 0.84
COMMD4-215ENST00000566843 NPC1L1Q9UHC9 1359 aa20.32■□□□□ 0.84
COMMD4-215ENST00000566843 ASXL1Q8IXJ9 1541 aa20.31■□□□□ 0.84
COMMD4-215ENST00000566843 NKTRP30414 1462 aaKnown RBP20.31■□□□□ 0.84
COMMD4-215ENST00000566843 RGS3P49796 1198 aa20.3■□□□□ 0.84
COMMD4-215ENST00000566843 USP19O94966 1318 aa20.3■□□□□ 0.84
COMMD4-215ENST00000566843 FANCAO15360 1455 aa20.29■□□□□ 0.84
COMMD4-215ENST00000566843 CD109Q6YHK3 1445 aa20.29■□□□□ 0.84
COMMD4-215ENST00000566843 FAM43AQ8N2R8 423 aa20.29■□□□□ 0.84
COMMD4-215ENST00000566843 MADDQ8WXG6 1647 aa20.28■□□□□ 0.84
COMMD4-215ENST00000566843 ARAP3Q8WWN8 1544 aa20.26■□□□□ 0.83
COMMD4-215ENST00000566843 CDCA8Q53HL2 280 aa20.26■□□□□ 0.83
COMMD4-215ENST00000566843 MYOM1P52179 1685 aa20.26■□□□□ 0.83
COMMD4-215ENST00000566843 DUOX2Q9NRD8 1548 aa20.25■□□□□ 0.83
COMMD4-215ENST00000566843 ABCC1P33527 1531 aa20.25■□□□□ 0.83
COMMD4-215ENST00000566843 TRAPPC8Q9Y2L5 1435 aa20.24■□□□□ 0.83
COMMD4-215ENST00000566843 FAM69CQ0P6D2 419 aa20.24■□□□□ 0.83
COMMD4-215ENST00000566843 NGEFQ8N5V2 710 aa20.24■□□□□ 0.83
COMMD4-215ENST00000566843 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.24■□□□□ 0.83
COMMD4-215ENST00000566843 NINLQ9Y2I6 1382 aa20.24■□□□□ 0.83
COMMD4-215ENST00000566843 UBE2Q2Q8WVN8 375 aa20.24■□□□□ 0.83
COMMD4-215ENST00000566843 SPINK5Q9NQ38 1064 aaPredicted RBP20.24■□□□□ 0.83
COMMD4-215ENST00000566843 SCAPERQ9BY12 1400 aa20.23■□□□□ 0.83
COMMD4-215ENST00000566843 E9PSI1 815 aa20.23■□□□□ 0.83
COMMD4-215ENST00000566843 IGHDP01880 384 aa20.23■□□□□ 0.83
COMMD4-215ENST00000566843 AFAP1Q8N556 730 aa20.23■□□□□ 0.83
COMMD4-215ENST00000566843 PDE3AQ14432 1141 aa20.23■□□□□ 0.83
COMMD4-215ENST00000566843 SCAF11Q99590 1463 aaKnown RBP20.23■□□□□ 0.83
COMMD4-215ENST00000566843 CGNL1Q0VF96 1302 aa20.22■□□□□ 0.83
COMMD4-215ENST00000566843 MAPK8IP3Q9UPT6 1336 aa20.22■□□□□ 0.83
COMMD4-215ENST00000566843 BCAR3O75815 825 aa20.22■□□□□ 0.83
COMMD4-215ENST00000566843 NLRP1Q9C000 1473 aa20.21■□□□□ 0.83
COMMD4-215ENST00000566843 SPHKAPQ2M3C7 1700 aa20.21■□□□□ 0.83
COMMD4-215ENST00000566843 ADGRL1O94910 1474 aa20.21■□□□□ 0.83
COMMD4-215ENST00000566843 RSPH6AQ9H0K4 717 aa20.2■□□□□ 0.82
COMMD4-215ENST00000566843 APAF1O14727 1248 aa20.19■□□□□ 0.82
COMMD4-215ENST00000566843 BECN1Q14457 450 aa20.19■□□□□ 0.82
COMMD4-215ENST00000566843 STAC3Q96MF2 364 aa20.19■□□□□ 0.82
COMMD4-215ENST00000566843 CCDC146Q8IYE0 955 aa20.18■□□□□ 0.82
COMMD4-215ENST00000566843 ZMYM3Q14202 1370 aa20.18■□□□□ 0.82
COMMD4-215ENST00000566843 DIP2BQ9P265 1576 aa20.17■□□□□ 0.82
COMMD4-215ENST00000566843 CLUAP1Q96AJ1 413 aa20.16■□□□□ 0.82
COMMD4-215ENST00000566843 SEC24BO95487 1268 aa20.15■□□□□ 0.82
COMMD4-215ENST00000566843 KDM5AP29375 1690 aaKnown RBP20.15■□□□□ 0.82
COMMD4-215ENST00000566843 POGKQ9P215 609 aa20.15■□□□□ 0.82
COMMD4-215ENST00000566843 CEP152O94986 1710 aa20.14■□□□□ 0.82
COMMD4-215ENST00000566843 GLI2P10070 1586 aa20.14■□□□□ 0.82
COMMD4-215ENST00000566843 ANTXR1Q9H6X2 564 aa20.14■□□□□ 0.81
COMMD4-215ENST00000566843 KIAA1210Q9ULL0 1709 aa20.14■□□□□ 0.81
COMMD4-215ENST00000566843 MAP3K4Q9Y6R4 1608 aa20.14■□□□□ 0.81
COMMD4-215ENST00000566843 TRPM2O94759 1503 aa20.14■□□□□ 0.81
COMMD4-215ENST00000566843 SPAG9O60271 1321 aaKnown RBP20.14■□□□□ 0.81
COMMD4-215ENST00000566843 AAMPQ13685 434 aa20.14■□□□□ 0.81
COMMD4-215ENST00000566843 DMRT2Q9Y5R5 561 aa20.13■□□□□ 0.81
COMMD4-215ENST00000566843 CENPJQ9HC77 1338 aaPredicted RBP20.12■□□□□ 0.81
COMMD4-215ENST00000566843 L1TD1Q5T7N2 865 aaKnown RBP20.12■□□□□ 0.81
COMMD4-215ENST00000566843 DNAJC5Q9H3Z4 198 aa20.12■□□□□ 0.81
COMMD4-215ENST00000566843 PTPRTO14522 1441 aa20.1■□□□□ 0.81
COMMD4-215ENST00000566843 RAPGEF3O95398 923 aa20.09■□□□□ 0.81
COMMD4-215ENST00000566843 PMFBP1Q8TBY8 1022 aa20.08■□□□□ 0.81
COMMD4-215ENST00000566843 COG6Q9Y2V7 657 aa20.08■□□□□ 0.81
COMMD4-215ENST00000566843 POLR3AO14802 1390 aaPredicted RBP20.08■□□□□ 0.81
COMMD4-215ENST00000566843 CFAP74Q9C0B2 1584 aa20.08■□□□□ 0.81
COMMD4-215ENST00000566843 NEO1Q92859 1461 aa20.08■□□□□ 0.8
COMMD4-215ENST00000566843 PANK1Q8TE04 598 aa20.07■□□□□ 0.8
COMMD4-215ENST00000566843 TBC1D32Q96NH3 1257 aa20.07■□□□□ 0.8
COMMD4-215ENST00000566843 SLC24A1O60721 1099 aa20.07■□□□□ 0.8
COMMD4-215ENST00000566843 EIF5BO60841 1220 aaKnown RBP20.07■□□□□ 0.8
COMMD4-215ENST00000566843 WWC1Q8IX03 1113 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms