RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 CHRM1P11229 460 aaPredicted RBP3.65□□□□□ -1.82
CHD9-218ENST00000566029 UHRF1BP1Q6BDS2 1440 aa3.65□□□□□ -1.82
CHD9-218ENST00000566029 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.65□□□□□ -1.82
CHD9-218ENST00000566029 STK11IPQ8N1F8 1099 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 SENP3-EIF4A1A0A087X0R7 540 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 HDGFP51858 240 aaKnown RBP3.65□□□□□ -1.83
CHD9-218ENST00000566029 DDX11L8A8MPP1 907 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 LETM1O95202 739 aaPredicted RBP3.65□□□□□ -1.83
CHD9-218ENST00000566029 SLKQ9H2G2 1235 aaPredicted RBP3.65□□□□□ -1.83
CHD9-218ENST00000566029 APBB1O00213 710 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 PPP4R3CPQ6ZMV5 832 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 PLCD3Q8N3E9 789 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 TBC1D32Q96NH3 1257 aa3.65□□□□□ -1.83
CHD9-218ENST00000566029 PTPN23Q9H3S7 1636 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 SKOR2Q2VWA4 1001 aaPredicted RBP3.64□□□□□ -1.83
CHD9-218ENST00000566029 NOL7Q9UMY1 257 aaKnown RBP3.64□□□□□ -1.83
CHD9-218ENST00000566029 ATP2B3Q16720 1220 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 HMGXB3Q12766 1538 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 P3H3Q8IVL6 736 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 FAM13BQ9NYF5 915 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 UPF2Q9HAU5 1272 aaKnown RBP3.64□□□□□ -1.83
CHD9-218ENST00000566029 FYCO1Q9BQS8 1478 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 MAPK8IP3Q9UPT6 1336 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 SMARCA4P51532 1647 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 IGHDP01880 384 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 NLRP13Q86W25 1043 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 FBXW7Q969H0 707 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 MPHOSPH9Q99550 1183 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 GZF1Q9H116 711 aaPredicted RBP3.64□□□□□ -1.83
CHD9-218ENST00000566029 USP47Q96K76 1375 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 TMC1Q8TDI8 760 aa3.64□□□□□ -1.83
CHD9-218ENST00000566029 GTF2F1P35269 517 aaKnown RBP eCLIP3.63□□□□□ -1.83
CHD9-218ENST00000566029 SMC5Q8IY18 1101 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 FHOD3Q2V2M9 1422 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 UQCRHLA0A096LP55 91 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 UQCRHP07919 91 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 CUL7Q14999 1698 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 CSPP1Q1MSJ5 1256 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 PLEKHH2Q8IVE3 1493 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 ARHGEF11O15085 1522 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 PDS5BQ9NTI5 1447 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 CCAR2Q8N163 923 aaKnown RBP3.63□□□□□ -1.83
CHD9-218ENST00000566029 GABPB1Q06547 395 aaPredicted RBP3.63□□□□□ -1.83
CHD9-218ENST00000566029 CGNL1Q0VF96 1302 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 CARMIL1Q5VZK9 1371 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 RBM25P49756 843 aaKnown RBP3.63□□□□□ -1.83
CHD9-218ENST00000566029 SLC20A2Q08357 652 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 CLEC17AQ6ZS10 378 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 GAPVD1Q14C86 1478 aa3.63□□□□□ -1.83
CHD9-218ENST00000566029 SLFN5Q08AF3 891 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 ABCA5Q8WWZ7 1642 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 ATAD2BQ9ULI0 1458 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 SETQ01105 290 aaPredicted RBP3.62□□□□□ -1.83
CHD9-218ENST00000566029 MYRIPQ8NFW9 859 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 TOP2BQ02880 1626 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 KLHL40Q2TBA0 621 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 ZNF771Q7L3S4 317 aaPredicted RBP3.62□□□□□ -1.83
CHD9-218ENST00000566029 ZKSCAN5Q9Y2L8 839 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 WDR70Q9NW82 654 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 CFAP74Q9C0B2 1584 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 PER1O15534 1290 aaPredicted RBP3.62□□□□□ -1.83
CHD9-218ENST00000566029 ROCK1Q13464 1354 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 AXDND1Q5T1B0 1012 aaPredicted RBP3.62□□□□□ -1.83
CHD9-218ENST00000566029 FOXD4L1Q9NU39 408 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 LAMC3Q9Y6N6 1575 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 MMP14P50281 582 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 MTUS2Q5JR59 1369 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 PANK3Q9H999 370 aa3.62□□□□□ -1.83
CHD9-218ENST00000566029 PLEKHH1Q9ULM0 1364 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 TNNT1P13805 278 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 CLUAP1Q96AJ1 413 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 NINLQ9Y2I6 1382 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 CDCA8Q53HL2 280 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 RNF216Q9NWF9 866 aaPredicted RBP3.61□□□□□ -1.83
CHD9-218ENST00000566029 ZNF445P59923 1031 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 SNX21Q969T3 373 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 PZPP20742 1482 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 ZFP91Q96JP5 570 aaPredicted RBP3.61□□□□□ -1.83
CHD9-218ENST00000566029 PDZRN3Q9UPQ7 1066 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 XPCQ01831 940 aaPredicted RBP3.61□□□□□ -1.83
CHD9-218ENST00000566029 NEUROD2Q15784 382 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 FTSJ3Q8IY81 847 aaKnown RBP3.61□□□□□ -1.83
CHD9-218ENST00000566029 CFAP65Q6ZU64 1925 aaKnown RBP3.61□□□□□ -1.83
CHD9-218ENST00000566029 FOSBP53539 338 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 DUSP27Q5VZP5 1158 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 RBSNQ9H1K0 784 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 FGD5Q6ZNL6 1462 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 KIAA1107Q9UPP5 1409 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 TNPO1Q92973 898 aaKnown RBP3.61□□□□□ -1.83
CHD9-218ENST00000566029 CHMP4CQ96CF2 233 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 CCDC39Q9UFE4 941 aa3.61□□□□□ -1.83
CHD9-218ENST00000566029 TSC1Q92574 1164 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 HDAC5Q9UQL6 1122 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 RALGAPBQ86X10 1494 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 TAF3Q5VWG9 929 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 NPC1L1Q9UHC9 1359 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 OS9Q13438 667 aaPredicted RBP3.6□□□□□ -1.83
CHD9-218ENST00000566029 RRP7BPQ9NSQ0 103 aa3.6□□□□□ -1.83
CHD9-218ENST00000566029 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.6□□□□□ -1.833e-6■■□□□ 12.1
CHD9-218ENST00000566029 GOLGA2Q08379 1002 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms