RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 SLC4A3P48751 1232 aa8.77□□□□□ -1.01
HMGB1P33-201ENST00000563485 KCNC4Q03721 635 aa8.76□□□□□ -1.01
HMGB1P33-201ENST00000563485 TJAP1Q5JTD0 557 aa8.76□□□□□ -1.01
HMGB1P33-201ENST00000563485 NECTIN2Q92692 538 aa8.76□□□□□ -1.01
HMGB1P33-201ENST00000563485 MTRQ99707 1265 aa8.76□□□□□ -1.01
HMGB1P33-201ENST00000563485 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.75□□□□□ -1.01
HMGB1P33-201ENST00000563485 NLRP7Q8WX94 980 aa8.75□□□□□ -1.01
HMGB1P33-201ENST00000563485 SLC10A3P09131 477 aa8.73□□□□□ -1.01
HMGB1P33-201ENST00000563485 PHOX2BQ99453 314 aa8.73□□□□□ -1.01
HMGB1P33-201ENST00000563485 LMOD2Q6P5Q4 547 aa8.72□□□□□ -1.01
HMGB1P33-201ENST00000563485 IL21Q9HBE4 155 aa8.72□□□□□ -1.01
HMGB1P33-201ENST00000563485 CFHP08603 1231 aa8.71□□□□□ -1.02
HMGB1P33-201ENST00000563485 COPS2P61201 443 aa8.71□□□□□ -1.02
HMGB1P33-201ENST00000563485 MAP2K5Q13163 448 aa8.71□□□□□ -1.02
HMGB1P33-201ENST00000563485 ZNF516Q92618 1163 aa8.71□□□□□ -1.02
HMGB1P33-201ENST00000563485 PRR14Q9BWN1 585 aa8.7□□□□□ -1.02
HMGB1P33-201ENST00000563485 DAXXQ9UER7 740 aaPredicted RBP8.69□□□□□ -1.02
HMGB1P33-201ENST00000563485 PCDHB3Q9Y5E6 796 aa8.69□□□□□ -1.02
HMGB1P33-201ENST00000563485 KMT5BQ4FZB7 885 aa8.68□□□□□ -1.02
HMGB1P33-201ENST00000563485 BLOC1S3Q6QNY0 202 aa8.68□□□□□ -1.02
HMGB1P33-201ENST00000563485 IRF6O14896 467 aa8.67□□□□□ -1.02
HMGB1P33-201ENST00000563485 ACTN4O43707 911 aaKnown RBP8.67□□□□□ -1.02
HMGB1P33-201ENST00000563485 MINK1Q8N4C8 1332 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P33-201ENST00000563485 DDX11L8A8MPP1 907 aa8.66□□□□□ -1.02
HMGB1P33-201ENST00000563485 NKX2-3Q8TAU0 364 aa8.66□□□□□ -1.02
HMGB1P33-201ENST00000563485 CCDC102AQ96A19 550 aa8.66□□□□□ -1.02
HMGB1P33-201ENST00000563485 RDH13Q8NBN7 331 aa8.65□□□□□ -1.02
HMGB1P33-201ENST00000563485 ZPR1O75312 459 aa8.64□□□□□ -1.03
HMGB1P33-201ENST00000563485 RGS20O76081 388 aa8.64□□□□□ -1.03
HMGB1P33-201ENST00000563485 RSPH4AQ5TD94 716 aa8.64□□□□□ -1.03
HMGB1P33-201ENST00000563485 ZC3H15Q8WU90 426 aaKnown RBP8.63□□□□□ -1.03
HMGB1P33-201ENST00000563485 TLL1O43897 1013 aa8.62□□□□□ -1.03
HMGB1P33-201ENST00000563485 PPP1R18Q6NYC8 613 aa8.62□□□□□ -1.03
HMGB1P33-201ENST00000563485 MDM2Q00987 491 aaPredicted RBP8.61□□□□□ -1.03
HMGB1P33-201ENST00000563485 PUS10Q3MIT2 529 aaKnown RBP8.61□□□□□ -1.03
HMGB1P33-201ENST00000563485 SULF1Q8IWU6 871 aa8.61□□□□□ -1.03
HMGB1P33-201ENST00000563485 ZMYND10O75800 440 aa8.6□□□□□ -1.03
HMGB1P33-201ENST00000563485 BARGINQ6ZT62 677 aa8.6□□□□□ -1.03
HMGB1P33-201ENST00000563485 SLC24A1O60721 1099 aa8.59□□□□□ -1.03
HMGB1P33-201ENST00000563485 GCGRP47871 477 aa8.59□□□□□ -1.03
HMGB1P33-201ENST00000563485 KRI1Q8N9T8 703 aaKnown RBP8.59□□□□□ -1.03
HMGB1P33-201ENST00000563485 FUT2Q10981 343 aa8.58□□□□□ -1.04
HMGB1P33-201ENST00000563485 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.58□□□□□ -1.04
HMGB1P33-201ENST00000563485 NR1I2O75469 434 aa8.57□□□□□ -1.04
HMGB1P33-201ENST00000563485 CD46P15529 392 aa8.57□□□□□ -1.04
HMGB1P33-201ENST00000563485 SCUBE3Q8IX30 993 aa8.56□□□□□ -1.04
HMGB1P33-201ENST00000563485 MORN1Q5T089 497 aa8.55□□□□□ -1.04
HMGB1P33-201ENST00000563485 GPCPD1Q9NPB8 672 aa8.55□□□□□ -1.04
HMGB1P33-201ENST00000563485 ADH1BP00325 375 aa8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 CLCN1P35523 988 aa8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 GGCXP38435 758 aa8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 ATP6V1AP38606 617 aa8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 TMUB1Q9BVT8 246 aa8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 REPIN1Q9BWE0 567 aaKnown RBP8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 PRKD2Q9BZL6 878 aa8.54□□□□□ -1.04
HMGB1P33-201ENST00000563485 S1PR4O95977 384 aa8.53□□□□□ -1.04
HMGB1P33-201ENST00000563485 FAM217BQ9NTX9 383 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P33-201ENST00000563485 RNF223E7ERA6 249 aa8.52□□□□□ -1.05
HMGB1P33-201ENST00000563485 SLC27A5Q9Y2P5 690 aa8.52□□□□□ -1.05
HMGB1P33-201ENST00000563485 PPEF1O14829 653 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P33-201ENST00000563485 SPSB2Q99619 263 aa8.51□□□□□ -1.05
HMGB1P33-201ENST00000563485 IRX2Q9BZI1 471 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P33-201ENST00000563485 KDM4AO75164 1064 aa8.5□□□□□ -1.05
HMGB1P33-201ENST00000563485 TTLL12Q14166 644 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P33-201ENST00000563485 AMHR2Q16671 573 aa8.5□□□□□ -1.05
HMGB1P33-201ENST00000563485 THAP11Q96EK4 314 aa8.5□□□□□ -1.05
HMGB1P33-201ENST00000563485 SLC6A16Q9GZN6 736 aa8.5□□□□□ -1.05
HMGB1P33-201ENST00000563485 FMNL1O95466 1100 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P33-201ENST00000563485 GRIPAP1Q4V328 841 aa8.48□□□□□ -1.05
HMGB1P33-201ENST00000563485 HLA-CQ95604 372 aa8.48□□□□□ -1.05
HMGB1P33-201ENST00000563485 V9GY48 417 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P33-201ENST00000563485 TRIM66O15016 1216 aa8.47□□□□□ -1.05
HMGB1P33-201ENST00000563485 SSTR3P32745 418 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P33-201ENST00000563485 RNF19BQ6ZMZ0 732 aa8.47□□□□□ -1.05
HMGB1P33-201ENST00000563485 ANKLE1Q8NAG6 615 aa8.47□□□□□ -1.05
HMGB1P33-201ENST00000563485 EMID1Q96A84 441 aaPredicted RBP8.47□□□□□ -1.05
HMGB1P33-201ENST00000563485 BCANQ96GW7 911 aa8.47□□□□□ -1.05
HMGB1P33-201ENST00000563485 HOXA2O43364 376 aa8.46□□□□□ -1.06
HMGB1P33-201ENST00000563485 USP46P62068 366 aa8.46□□□□□ -1.06
HMGB1P33-201ENST00000563485 BRICD5Q6PL45 260 aa8.46□□□□□ -1.06
HMGB1P33-201ENST00000563485 GIGYF2Q6Y7W6 1299 aaKnown RBP8.46□□□□□ -1.06
HMGB1P33-201ENST00000563485 FAM160A2Q8N612 972 aaPredicted RBP8.46□□□□□ -1.06
HMGB1P33-201ENST00000563485 PRDM9Q9NQV7 894 aa8.46□□□□□ -1.06
HMGB1P33-201ENST00000563485 GUCA2AQ02747 115 aa8.45□□□□□ -1.06
HMGB1P33-201ENST00000563485 PARP9Q8IXQ6 854 aa8.45□□□□□ -1.06
HMGB1P33-201ENST00000563485 AK7Q96M32 723 aa8.45□□□□□ -1.06
HMGB1P33-201ENST00000563485 SALL2Q9Y467 1007 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P33-201ENST00000563485 PLA2G2CQ5R387 149 aa8.44□□□□□ -1.06
HMGB1P33-201ENST00000563485 SLC24A3Q9HC58 644 aa8.44□□□□□ -1.06
HMGB1P33-201ENST00000563485 SLC19A1P41440 591 aa8.43□□□□□ -1.06
HMGB1P33-201ENST00000563485 LIAT1Q6ZQX7 453 aa8.43□□□□□ -1.06
HMGB1P33-201ENST00000563485 NUTM1Q86Y26 1132 aa8.43□□□□□ -1.06
HMGB1P33-201ENST00000563485 Q3C1V9 767 aa8.42□□□□□ -1.06
HMGB1P33-201ENST00000563485 MSS51Q4VC12 460 aa8.42□□□□□ -1.06
HMGB1P33-201ENST00000563485 MS4A1P11836 297 aa8.4□□□□□ -1.06
HMGB1P33-201ENST00000563485 SPIRE2Q8WWL2 714 aa8.4□□□□□ -1.06
HMGB1P33-201ENST00000563485 BEGAINQ9BUH8 593 aa8.4□□□□□ -1.06
HMGB1P33-201ENST00000563485 FCF1Q9Y324 198 aaKnown RBP8.4□□□□□ -1.06
HMGB1P33-201ENST00000563485 GFRA3O60609 400 aa8.39□□□□□ -1.07
HMGB1P33-201ENST00000563485 PDE4DQ08499 809 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms