RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 SLIT1O75093 1534 aa9.27□□□□□ -0.93
SPG11-221ENST00000560299 SIN3AQ96ST3 1273 aa9.27□□□□□ -0.93
SPG11-221ENST00000560299 ARHGAP23Q9P227 1491 aa9.27□□□□□ -0.93
SPG11-221ENST00000560299 PIK3C2BO00750 1634 aa9.27□□□□□ -0.93
SPG11-221ENST00000560299 TONSLQ96HA7 1378 aa9.26□□□□□ -0.93
SPG11-221ENST00000560299 NEURL4Q96JN8 1562 aa9.26□□□□□ -0.93
SPG11-221ENST00000560299 FBXO31Q5XUX0 539 aaPredicted RBP9.26□□□□□ -0.93
SPG11-221ENST00000560299 CHRDL2Q6WN34 429 aa9.26□□□□□ -0.93
SPG11-221ENST00000560299 UGGT1Q9NYU2 1555 aa9.25□□□□□ -0.93
SPG11-221ENST00000560299 E9PCH4 1651 aa9.24□□□□□ -0.93
SPG11-221ENST00000560299 SLC4A2P04920 1241 aa9.24□□□□□ -0.93
SPG11-221ENST00000560299 SYNMO15061 1565 aa9.24□□□□□ -0.93
SPG11-221ENST00000560299 CCDC144AA2RUR9 1427 aa9.23□□□□□ -0.93
SPG11-221ENST00000560299 STRCQ7RTU9 1775 aa9.23□□□□□ -0.93
SPG11-221ENST00000560299 HDGFP51858 240 aaKnown RBP9.23□□□□□ -0.93
SPG11-221ENST00000560299 UBR1Q8IWV7 1749 aa9.22□□□□□ -0.93
SPG11-221ENST00000560299 TRPM2O94759 1503 aa9.22□□□□□ -0.93
SPG11-221ENST00000560299 IDI1Q13907 227 aa9.22□□□□□ -0.93
SPG11-221ENST00000560299 ANKLE2Q86XL3 938 aa9.22□□□□□ -0.93
SPG11-221ENST00000560299 TMEM2Q9UHN6 1383 aa9.22□□□□□ -0.93
SPG11-221ENST00000560299 IQSEC2Q5JU85 1478 aa9.21□□□□□ -0.93
SPG11-221ENST00000560299 ADGRB3O60242 1522 aa9.21□□□□□ -0.93
SPG11-221ENST00000560299 TMEM131LA2VDJ0 1609 aa9.2□□□□□ -0.94
SPG11-221ENST00000560299 SPHKAPQ2M3C7 1700 aa9.19□□□□□ -0.94
SPG11-221ENST00000560299 CFAP65Q6ZU64 1925 aaKnown RBP9.19□□□□□ -0.94
SPG11-221ENST00000560299 PPP1R15AO75807 674 aaPredicted RBP9.19□□□□□ -0.94
SPG11-221ENST00000560299 HSPA2P54652 639 aa9.19□□□□□ -0.94
SPG11-221ENST00000560299 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.19□□□□□ -0.94
SPG11-221ENST00000560299 STAC3Q96MF2 364 aa9.19□□□□□ -0.94
SPG11-221ENST00000560299 RPGRIP1LQ68CZ1 1315 aa9.19□□□□□ -0.94
SPG11-221ENST00000560299 ZFYVE9O95405 1425 aa9.19□□□□□ -0.94
SPG11-221ENST00000560299 SCAF11Q99590 1463 aaKnown RBP9.19□□□□□ -0.94
SPG11-221ENST00000560299 POLR1AO95602 1720 aaPredicted RBP9.19□□□□□ -0.94
SPG11-221ENST00000560299 L3MBTL2Q969R5 705 aa9.18□□□□□ -0.94
SPG11-221ENST00000560299 EID1Q9Y6B2 187 aa9.18□□□□□ -0.94
SPG11-221ENST00000560299 PIK3R4Q99570 1358 aa9.17□□□□□ -0.94
SPG11-221ENST00000560299 NPHP4O75161 1426 aaPredicted RBP9.16□□□□□ -0.94
SPG11-221ENST00000560299 RGL3Q3MIN7 710 aa9.16□□□□□ -0.94
SPG11-221ENST00000560299 SAMD1Q6SPF0 538 aaPredicted RBP9.16□□□□□ -0.94
SPG11-221ENST00000560299 SP7Q8TDD2 431 aaPredicted RBP9.16□□□□□ -0.94
SPG11-221ENST00000560299 PLEKHG1Q9ULL1 1385 aa9.15□□□□□ -0.94
SPG11-221ENST00000560299 KIF1BO60333 1816 aa9.15□□□□□ -0.94
SPG11-221ENST00000560299 CHGAP10645 457 aaKnown RBP9.15□□□□□ -0.94
SPG11-221ENST00000560299 DCAF11Q8TEB1 546 aa9.15□□□□□ -0.94
SPG11-221ENST00000560299 CPS1P31327 1500 aa9.15□□□□□ -0.95
SPG11-221ENST00000560299 LTBP4Q8N2S1 1624 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 TXNDC2Q86VQ3 553 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 STAG3Q9UJ98 1225 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 KDM2AQ9Y2K7 1162 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 DIP2AQ14689 1571 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 SPATA31E1Q6ZUB1 1445 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 PRAG1Q86YV5 1406 aa9.14□□□□□ -0.95
SPG11-221ENST00000560299 IQGAP1P46940 1657 aa9.13□□□□□ -0.95
SPG11-221ENST00000560299 CLTCL1P53675 1640 aa9.13□□□□□ -0.95
SPG11-221ENST00000560299 LTKP29376 864 aa9.13□□□□□ -0.95
SPG11-221ENST00000560299 ZNF326Q5BKZ1 582 aaKnown RBP9.13□□□□□ -0.95
SPG11-221ENST00000560299 TBX22Q9Y458 520 aa9.13□□□□□ -0.95
SPG11-221ENST00000560299 NCOA3Q9Y6Q9 1424 aa9.13□□□□□ -0.95
SPG11-221ENST00000560299 SETBP1Q9Y6X0 1596 aa9.12□□□□□ -0.95
SPG11-221ENST00000560299 NCKAP5LQ9HCH0 1330 aa9.12□□□□□ -0.95
SPG11-221ENST00000560299 RIMS2Q9UQ26 1411 aa9.12□□□□□ -0.95
SPG11-221ENST00000560299 VGFO15240 615 aaPredicted RBP9.11□□□□□ -0.95
SPG11-221ENST00000560299 NEXMIFQ5QGS0 1516 aa9.1□□□□□ -0.95
SPG11-221ENST00000560299 NKTRP30414 1462 aaKnown RBP9.09□□□□□ -0.95
SPG11-221ENST00000560299 NWD1Q149M9 1564 aa9.09□□□□□ -0.95
SPG11-221ENST00000560299 NRXN1Q9ULB1 1477 aa9.08□□□□□ -0.96
SPG11-221ENST00000560299 ADAMTS13Q76LX8 1427 aa9.08□□□□□ -0.96
SPG11-221ENST00000560299 ZNF316A6NFI3 1004 aaPredicted RBP9.08□□□□□ -0.96
SPG11-221ENST00000560299 KCNA6P17658 529 aa9.08□□□□□ -0.96
SPG11-221ENST00000560299 CERKQ8TCT0 537 aa9.08□□□□□ -0.96
SPG11-221ENST00000560299 MYOM2P54296 1465 aa9.08□□□□□ -0.96
SPG11-221ENST00000560299 EIF4G2P78344 907 aaKnown RBP eCLIP9.07□□□□□ -0.96
SPG11-221ENST00000560299 NBPF8Q3BBV2 869 aa9.07□□□□□ -0.96
SPG11-221ENST00000560299 MYO5BQ9ULV0 1848 aa9.07□□□□□ -0.96
SPG11-221ENST00000560299 PPLO60437 1756 aa9.06□□□□□ -0.96
SPG11-221ENST00000560299 ROCK2O75116 1388 aaKnown RBP9.05□□□□□ -0.96
SPG11-221ENST00000560299 FBXO41Q8TF61 875 aa9.05□□□□□ -0.96
SPG11-221ENST00000560299 SIRT1Q96EB6 747 aa9.05□□□□□ -0.96
SPG11-221ENST00000560299 CARD11Q9BXL7 1154 aa9.05□□□□□ -0.96
SPG11-221ENST00000560299 IFT172Q9UG01 1749 aa9.05□□□□□ -0.96
SPG11-221ENST00000560299 NRXN3Q9Y4C0 1643 aa9.05□□□□□ -0.96
SPG11-221ENST00000560299 PIK3C2GO75747 1445 aa9.05□□□□□ -0.96
SPG11-221ENST00000560299 RALGAPBQ86X10 1494 aa9.04□□□□□ -0.96
SPG11-221ENST00000560299 CHD2O14647 1828 aaKnown RBP9.04□□□□□ -0.96
SPG11-221ENST00000560299 LRRC7Q96NW7 1537 aa9.04□□□□□ -0.96
SPG11-221ENST00000560299 TECPR2O15040 1411 aa9.04□□□□□ -0.96
SPG11-221ENST00000560299 ZNF335Q9H4Z2 1342 aaPredicted RBP9.04□□□□□ -0.96
SPG11-221ENST00000560299 LAMC1P11047 1609 aa9.03□□□□□ -0.96
SPG11-221ENST00000560299 POLA2Q14181 598 aa9.03□□□□□ -0.96
SPG11-221ENST00000560299 ADGRF5Q8IZF2 1346 aa9.03□□□□□ -0.96
SPG11-221ENST00000560299 DCCP43146 1447 aa9.02□□□□□ -0.97
SPG11-221ENST00000560299 PTCH1Q13635 1447 aa9.02□□□□□ -0.97
SPG11-221ENST00000560299 XRN1Q8IZH2 1706 aaKnown RBP9.02□□□□□ -0.97
SPG11-221ENST00000560299 KIAA1210Q9ULL0 1709 aa9.02□□□□□ -0.97
SPG11-221ENST00000560299 TRPM1Q7Z4N2 1603 aa9.02□□□□□ -0.97
SPG11-221ENST00000560299 GPRASP1Q5JY77 1395 aa9.01□□□□□ -0.97
SPG11-221ENST00000560299 ABCC11Q96J66 1382 aa9.01□□□□□ -0.97
SPG11-221ENST00000560299 SETD1AO15047 1707 aaKnown RBP9.01□□□□□ -0.97
SPG11-221ENST00000560299 SLC24A1O60721 1099 aa9.01□□□□□ -0.97
SPG11-221ENST00000560299 C14orf93Q9H972 538 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms