RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 RIMS2Q9UQ26 1411 aa18.98■□□□□ 0.63
SNX1-209ENST00000559961 TET3O43151 1660 aa18.98■□□□□ 0.63
SNX1-209ENST00000559961 C14orf37Q86TY3 774 aa18.97■□□□□ 0.63
SNX1-209ENST00000559961 TMEM94Q12767 1356 aa18.96■□□□□ 0.63
SNX1-209ENST00000559961 PLEKHG1Q9ULL1 1385 aa18.96■□□□□ 0.63
SNX1-209ENST00000559961 ZNF326Q5BKZ1 582 aaKnown RBP18.95■□□□□ 0.62
SNX1-209ENST00000559961 TBX22Q9Y458 520 aa18.95■□□□□ 0.62
SNX1-209ENST00000559961 TRIM52Q96A61 297 aa18.94■□□□□ 0.62
SNX1-209ENST00000559961 MSH6P52701 1360 aa18.93■□□□□ 0.62
SNX1-209ENST00000559961 UNC13BO14795 1591 aa18.93■□□□□ 0.62
SNX1-209ENST00000559961 NUTM2DQ5VT03 806 aaPredicted RBP18.93■□□□□ 0.62
SNX1-209ENST00000559961 RBM33Q96EV2 1170 aaKnown RBP18.91■□□□□ 0.62
SNX1-209ENST00000559961 GCC2Q8IWJ2 1684 aa18.91■□□□□ 0.62
SNX1-209ENST00000559961 ZFYVE9O95405 1425 aa18.9■□□□□ 0.62
SNX1-209ENST00000559961 STRCP1A6NGW2 1772 aa18.89■□□□□ 0.61
SNX1-209ENST00000559961 NKTRP30414 1462 aaKnown RBP18.89■□□□□ 0.61
SNX1-209ENST00000559961 FAM135BQ49AJ0 1406 aa18.88■□□□□ 0.61
SNX1-209ENST00000559961 RRBP1Q9P2E9 1410 aaKnown RBP18.88■□□□□ 0.61
SNX1-209ENST00000559961 IQGAP3Q86VI3 1631 aa18.88■□□□□ 0.61
SNX1-209ENST00000559961 SLAIN2Q9P270 581 aa18.87■□□□□ 0.61
SNX1-209ENST00000559961 ATF3P18847 181 aa18.86■□□□□ 0.61
SNX1-209ENST00000559961 PIK3R4Q99570 1358 aa18.85■□□□□ 0.61
SNX1-209ENST00000559961 TMEM131LA2VDJ0 1609 aa18.85■□□□□ 0.61
SNX1-209ENST00000559961 E9PCH4 1651 aa18.84■□□□□ 0.61
SNX1-209ENST00000559961 CADPS2Q86UW7 1296 aa18.83■□□□□ 0.6
SNX1-209ENST00000559961 SLC4A1APQ9BWU0 796 aaKnown RBP18.83■□□□□ 0.6
SNX1-209ENST00000559961 AMOTL2Q9Y2J4 779 aa18.83■□□□□ 0.6
SNX1-209ENST00000559961 NCOA3Q9Y6Q9 1424 aa18.83■□□□□ 0.6
SNX1-209ENST00000559961 MED1Q15648 1581 aaPredicted RBP18.82■□□□□ 0.6
SNX1-209ENST00000559961 C19orf44Q9H6X5 657 aa18.82■□□□□ 0.6
SNX1-209ENST00000559961 ALKQ9UM73 1620 aa18.82■□□□□ 0.6
SNX1-209ENST00000559961 NAIPQ13075 1403 aa18.8■□□□□ 0.6
SNX1-209ENST00000559961 VGFO15240 615 aaPredicted RBP18.79■□□□□ 0.6
SNX1-209ENST00000559961 NWD1Q149M9 1564 aa18.78■□□□□ 0.6
SNX1-209ENST00000559961 DIP2AQ14689 1571 aa18.77■□□□□ 0.6
SNX1-209ENST00000559961 ADAMTS13Q76LX8 1427 aa18.76■□□□□ 0.59
SNX1-209ENST00000559961 TRPM2O94759 1503 aa18.76■□□□□ 0.59
SNX1-209ENST00000559961 ACIN1Q9UKV3 1341 aaKnown RBP18.75■□□□□ 0.59
SNX1-209ENST00000559961 HFM1A2PYH4 1435 aa18.75■□□□□ 0.59
SNX1-209ENST00000559961 MYO5BQ9ULV0 1848 aa18.74■□□□□ 0.59
SNX1-209ENST00000559961 RPGRIP1LQ68CZ1 1315 aa18.74■□□□□ 0.59
SNX1-209ENST00000559961 XIRP1Q702N8 1843 aaKnown RBP18.72■□□□□ 0.59
SNX1-209ENST00000559961 JCADQ9P266 1359 aa18.71■□□□□ 0.59
SNX1-209ENST00000559961 CHD2O14647 1828 aaKnown RBP18.71■□□□□ 0.59
SNX1-209ENST00000559961 SPHKAPQ2M3C7 1700 aa18.7■□□□□ 0.58
SNX1-209ENST00000559961 MEX3CQ5U5Q3 659 aaKnown RBP18.7■□□□□ 0.58
SNX1-209ENST00000559961 ROBO1Q9Y6N7 1651 aa18.69■□□□□ 0.58
SNX1-209ENST00000559961 METP08581 1390 aa18.66■□□□□ 0.58
SNX1-209ENST00000559961 PTPRUQ92729 1446 aa18.66■□□□□ 0.58
SNX1-209ENST00000559961 SETBP1Q9Y6X0 1596 aa18.65■□□□□ 0.58
SNX1-209ENST00000559961 MPHOSPH9Q99550 1183 aa18.65■□□□□ 0.58
SNX1-209ENST00000559961 SPATA31A6Q5VVP1 1343 aa18.64■□□□□ 0.57
SNX1-209ENST00000559961 DCCP43146 1447 aa18.64■□□□□ 0.57
SNX1-209ENST00000559961 FOXD1Q16676 465 aa18.63■□□□□ 0.57
SNX1-209ENST00000559961 RGL3Q3MIN7 710 aa18.63■□□□□ 0.57
SNX1-209ENST00000559961 CCDC144AA2RUR9 1427 aa18.63■□□□□ 0.57
SNX1-209ENST00000559961 CLTCL1P53675 1640 aa18.63■□□□□ 0.57
SNX1-209ENST00000559961 BRINP3Q76B58 766 aa18.62■□□□□ 0.57
SNX1-209ENST00000559961 KIF1BO60333 1816 aa18.6■□□□□ 0.57
SNX1-209ENST00000559961 PHLPP1O60346 1717 aa18.6■□□□□ 0.57
SNX1-209ENST00000559961 LRRC59Q96AG4 307 aaKnown RBP18.6■□□□□ 0.57
SNX1-209ENST00000559961 RGS17Q9UGC6 210 aaPredicted RBP18.6■□□□□ 0.57
SNX1-209ENST00000559961 NEXMIFQ5QGS0 1516 aa18.59■□□□□ 0.57
SNX1-209ENST00000559961 ZNF772Q68DY9 489 aaPredicted RBP18.59■□□□□ 0.57
SNX1-209ENST00000559961 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.58■□□□□ 0.57
SNX1-209ENST00000559961 NUTM2BA6NNL0 878 aaPredicted RBP18.58■□□□□ 0.56
SNX1-209ENST00000559961 NUTM2EB1AL46 878 aaPredicted RBP18.58■□□□□ 0.56
SNX1-209ENST00000559961 NUTM2AQ8IVF1 878 aaPredicted RBP18.58■□□□□ 0.56
SNX1-209ENST00000559961 ADGRL3Q9HAR2 1447 aa18.57■□□□□ 0.56
SNX1-209ENST00000559961 POTEAQ6S8J7 498 aa18.56■□□□□ 0.56
SNX1-209ENST00000559961 ANKRD30BQ9BXX2 1392 aa18.55■□□□□ 0.56
SNX1-209ENST00000559961 SETD5Q9C0A6 1442 aa18.55■□□□□ 0.56
SNX1-209ENST00000559961 NRXN3Q9Y4C0 1643 aa18.54■□□□□ 0.56
SNX1-209ENST00000559961 MST1RQ04912 1400 aa18.53■□□□□ 0.56
SNX1-209ENST00000559961 STK26Q9P289 416 aa18.53■□□□□ 0.56
SNX1-209ENST00000559961 XRN1Q8IZH2 1706 aaKnown RBP18.52■□□□□ 0.56
SNX1-209ENST00000559961 PTCH1Q13635 1447 aa18.52■□□□□ 0.56
SNX1-209ENST00000559961 AHDC1Q5TGY3 1603 aaPredicted RBP18.52■□□□□ 0.55
SNX1-209ENST00000559961 ROBO2Q9HCK4 1378 aa18.51■□□□□ 0.55
SNX1-209ENST00000559961 ADGRF5Q8IZF2 1346 aa18.5■□□□□ 0.55
SNX1-209ENST00000559961 ASXL1Q8IXJ9 1541 aa18.49■□□□□ 0.55
SNX1-209ENST00000559961 COL16A1Q07092 1604 aaPredicted RBP18.49■□□□□ 0.55
SNX1-209ENST00000559961 ESCO1Q5FWF5 840 aa18.48■□□□□ 0.55
SNX1-209ENST00000559961 C1orf167Q5SNV9 1468 aa18.47■□□□□ 0.55
SNX1-209ENST00000559961 RXRBP28702 533 aa18.47■□□□□ 0.55
SNX1-209ENST00000559961 DDX17Q92841 729 aaKnown RBP18.46■□□□□ 0.55
SNX1-209ENST00000559961 ORAI2Q96SN7 254 aa18.46■□□□□ 0.55
SNX1-209ENST00000559961 TMEM132EQ6IEE7 984 aa18.45■□□□□ 0.54
SNX1-209ENST00000559961 C8orf37Q96NL8 207 aa18.45■□□□□ 0.54
SNX1-209ENST00000559961 LRPPRCP42704 1394 aaKnown RBP18.44■□□□□ 0.54
SNX1-209ENST00000559961 SPATA31E1Q6ZUB1 1445 aa18.44■□□□□ 0.54
SNX1-209ENST00000559961 NGLY1Q96IV0 654 aa18.44■□□□□ 0.54
SNX1-209ENST00000559961 NPHP3Q7Z494 1330 aa18.44■□□□□ 0.54
SNX1-209ENST00000559961 RAB3GAP2Q9H2M9 1393 aa18.43■□□□□ 0.54
SNX1-209ENST00000559961 WAPLQ7Z5K2 1190 aa18.43■□□□□ 0.54
SNX1-209ENST00000559961 AFF2P51816 1311 aa18.43■□□□□ 0.54
SNX1-209ENST00000559961 DHX57Q6P158 1386 aaKnown RBP18.42■□□□□ 0.54
SNX1-209ENST00000559961 ADAMTS2O95450 1211 aa18.42■□□□□ 0.54
SNX1-209ENST00000559961 ABCC11Q96J66 1382 aa18.42■□□□□ 0.54
SNX1-209ENST00000559961 PRAG1Q86YV5 1406 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms