RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 ITSN2Q9NZM3 1697 aa8.02□□□□□ -1.13
SPG11-220ENST00000559933 KIF13AQ9H1H9 1805 aa8.02□□□□□ -1.13
SPG11-220ENST00000559933 SLC34A2O95436 690 aa8.02□□□□□ -1.13
SPG11-220ENST00000559933 PDE4AP27815 886 aa8.02□□□□□ -1.13
SPG11-220ENST00000559933 VARS2Q5ST30 1063 aaKnown RBP8.02□□□□□ -1.13
SPG11-220ENST00000559933 PLPP6Q8IY26 295 aa8.02□□□□□ -1.13
SPG11-220ENST00000559933 PTPN23Q9H3S7 1636 aa8.02□□□□□ -1.13
SPG11-220ENST00000559933 ZNF644Q9H582 1327 aaPredicted RBP8.02□□□□□ -1.13
SPG11-220ENST00000559933 TBC1D12O60347 775 aa8.01□□□□□ -1.13
SPG11-220ENST00000559933 PCDHGA4Q9Y5G9 962 aa8.01□□□□□ -1.13
SPG11-220ENST00000559933 SAMD9LQ8IVG5 1584 aa8.01□□□□□ -1.13
SPG11-220ENST00000559933 CAMSAP2Q08AD1 1489 aa8□□□□□ -1.13
SPG11-220ENST00000559933 TSPOAP1O95153 1857 aa8□□□□□ -1.13
SPG11-220ENST00000559933 MAP3K4Q9Y6R4 1608 aa8□□□□□ -1.13
SPG11-220ENST00000559933 ARHGAP5Q13017 1502 aa8□□□□□ -1.13
SPG11-220ENST00000559933 PPRC1Q5VV67 1664 aaKnown RBP8□□□□□ -1.13
SPG11-220ENST00000559933 DSG2Q14126 1118 aa8□□□□□ -1.13
SPG11-220ENST00000559933 RRBP1Q9P2E9 1410 aaKnown RBP8□□□□□ -1.13
SPG11-220ENST00000559933 FAM69CQ0P6D2 419 aa7.99□□□□□ -1.13
SPG11-220ENST00000559933 FAM50AQ14320 339 aaKnown RBP7.99□□□□□ -1.13
SPG11-220ENST00000559933 KHSRPQ92945 711 aaKnown RBP eCLIP7.99□□□□□ -1.13
SPG11-220ENST00000559933 ZNF777Q9ULD5 760 aaPredicted RBP7.99□□□□□ -1.13
SPG11-220ENST00000559933 SYCP2Q9BX26 1530 aa7.98□□□□□ -1.13
SPG11-220ENST00000559933 GLI2P10070 1586 aa7.98□□□□□ -1.13
SPG11-220ENST00000559933 ZNF316A6NFI3 1004 aaPredicted RBP7.98□□□□□ -1.13
SPG11-220ENST00000559933 NUDT7P0C024 238 aa7.98□□□□□ -1.13
SPG11-220ENST00000559933 ITGAEP38570 1179 aa7.98□□□□□ -1.13
SPG11-220ENST00000559933 TCOF1Q13428 1488 aaKnown RBP7.98□□□□□ -1.13
SPG11-220ENST00000559933 ARHGEF12Q9NZN5 1544 aa7.98□□□□□ -1.13
SPG11-220ENST00000559933 CD109Q6YHK3 1445 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 POTEB3A0JP26 581 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 PPP1R15BQ5SWA1 713 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 POTEBQ6S5H4 581 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 SPRYD3Q8NCJ5 442 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 PCGF6Q9BYE7 350 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 CRISPLD2Q9H0B8 497 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 CFDP1Q9UEE9 299 aaPredicted RBP7.97□□□□□ -1.13
SPG11-220ENST00000559933 ABCC1P33527 1531 aa7.97□□□□□ -1.13
SPG11-220ENST00000559933 PLCH2O75038 1416 aa7.96□□□□□ -1.13
SPG11-220ENST00000559933 PTPRKQ15262 1439 aa7.96□□□□□ -1.13
SPG11-220ENST00000559933 TRIM26Q12899 539 aaPredicted RBP7.96□□□□□ -1.14
SPG11-220ENST00000559933 PTCD2Q8WV60 388 aaKnown RBP7.96□□□□□ -1.14
SPG11-220ENST00000559933 LARP6Q9BRS8 491 aaKnown RBP7.96□□□□□ -1.14
SPG11-220ENST00000559933 CROCC2H7BZ55 1655 aa7.95□□□□□ -1.14
SPG11-220ENST00000559933 MIA2Q96PC5 1412 aa7.95□□□□□ -1.14
SPG11-220ENST00000559933 FANCAO15360 1455 aa7.95□□□□□ -1.14
SPG11-220ENST00000559933 DDX27Q96GQ7 796 aaKnown RBP7.95□□□□□ -1.14
SPG11-220ENST00000559933 DNMT1P26358 1616 aaKnown RBP7.95□□□□□ -1.14
SPG11-220ENST00000559933 PSDA5PKW4 1024 aaPredicted RBP7.94□□□□□ -1.14
SPG11-220ENST00000559933 HNRNPMP52272 730 aaKnown RBP eCLIP7.94□□□□□ -1.14
SPG11-220ENST00000559933 ZNF687Q8N1G0 1237 aa7.94□□□□□ -1.14
SPG11-220ENST00000559933 ARAP3Q8WWN8 1544 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 UPF1Q92900 1129 aaKnown RBP eCLIP7.93□□□□□ -1.14
SPG11-220ENST00000559933 LHX6Q9UPM6 363 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 NCKAP5LQ9HCH0 1330 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 ABCC5O15440 1437 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 DAPK1P53355 1430 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 AKNAQ7Z591 1439 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 TRAPPC8Q9Y2L5 1435 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 ADGRL1O94910 1474 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 MBD5Q9P267 1494 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 FRMPD1Q5SYB0 1578 aa7.93□□□□□ -1.14
SPG11-220ENST00000559933 CFAP44Q96MT7 982 aa7.92□□□□□ -1.14
SPG11-220ENST00000559933 CHIC2Q9UKJ5 165 aa7.92□□□□□ -1.14
SPG11-220ENST00000559933 CFAP74Q9C0B2 1584 aa7.92□□□□□ -1.14
SPG11-220ENST00000559933 PAXIP1Q6ZW49 1069 aaPredicted RBP7.91□□□□□ -1.14
SPG11-220ENST00000559933 KRTAP3-3Q9BYR6 98 aa7.91□□□□□ -1.14
SPG11-220ENST00000559933 KRTAP3-2Q9BYR7 98 aa7.91□□□□□ -1.14
SPG11-220ENST00000559933 SCAPERQ9BY12 1400 aa7.91□□□□□ -1.14
SPG11-220ENST00000559933 KDM6BO15054 1643 aa7.91□□□□□ -1.14
SPG11-220ENST00000559933 ARHGEF5Q12774 1597 aa7.9□□□□□ -1.14
SPG11-220ENST00000559933 CCDC141Q6ZP82 1450 aa7.9□□□□□ -1.14
SPG11-220ENST00000559933 EFCAB2Q5VUJ9 269 aa7.9□□□□□ -1.14
SPG11-220ENST00000559933 SPNS2Q8IVW8 549 aa7.9□□□□□ -1.14
SPG11-220ENST00000559933 ADGBQ8N7X0 1667 aa7.89□□□□□ -1.15
SPG11-220ENST00000559933 NEO1Q92859 1461 aa7.89□□□□□ -1.15
SPG11-220ENST00000559933 COL17A1Q9UMD9 1497 aaPredicted RBP7.89□□□□□ -1.15
SPG11-220ENST00000559933 C9orf84Q5VXU9 1444 aa7.89□□□□□ -1.15
SPG11-220ENST00000559933 POGZQ7Z3K3 1410 aa7.89□□□□□ -1.15
SPG11-220ENST00000559933 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.89□□□□□ -1.15
SPG11-220ENST00000559933 AFAP1Q8N556 730 aa7.89□□□□□ -1.15
SPG11-220ENST00000559933 RICTORQ6R327 1708 aa7.89□□□□□ -1.15
SPG11-220ENST00000559933 INO80Q9ULG1 1556 aaPredicted RBP7.88□□□□□ -1.15
SPG11-220ENST00000559933 ZFYVE16Q7Z3T8 1539 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 PLEKHH2Q8IVE3 1493 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 SOCS7O14512 581 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 RAPGEF3O95398 923 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 PBX2P40425 430 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 MAP3K9P80192 1104 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 MFSD10Q14728 455 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 OXER1Q8TDS5 423 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 RRP7BPQ9NSQ0 103 aa7.88□□□□□ -1.15
SPG11-220ENST00000559933 TEX14Q8IWB6 1497 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 KIAA1107Q9UPP5 1409 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 GCC2Q8IWJ2 1684 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 PPP4R3BQ5MIZ7 849 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 CADPS2Q86UW7 1296 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 KDM5CP41229 1560 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 MAST1Q9Y2H9 1570 aa7.87□□□□□ -1.15
SPG11-220ENST00000559933 DENND4BO75064 1496 aaPredicted RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms