RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 PLCH2O75038 1416 aa9.68□□□□□ -0.86
USP3-215ENST00000559771 LMTK3Q96Q04 1460 aa9.67□□□□□ -0.86
USP3-215ENST00000559771 SLC34A2O95436 690 aa9.67□□□□□ -0.86
USP3-215ENST00000559771 PCF11O94913 1555 aaKnown RBP9.67□□□□□ -0.86
USP3-215ENST00000559771 ZFYVE16Q7Z3T8 1539 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 FMN1Q68DA7 1419 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 POGZQ7Z3K3 1410 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 MYO5CQ9NQX4 1742 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 KLHL34Q8N239 644 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 PHF8Q9UPP1 1060 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 MAGI2Q86UL8 1455 aa9.66□□□□□ -0.86
USP3-215ENST00000559771 SCAPERQ9BY12 1400 aa9.65□□□□□ -0.86
USP3-215ENST00000559771 ARID4BQ4LE39 1312 aaPredicted RBP9.64□□□□□ -0.87
USP3-215ENST00000559771 SOX12O15370 315 aa9.64□□□□□ -0.87
USP3-215ENST00000559771 UBTFP17480 764 aaKnown RBP9.64□□□□□ -0.87
USP3-215ENST00000559771 C2orf72A6NCS6 295 aa9.63□□□□□ -0.87
USP3-215ENST00000559771 TROQ12816 1431 aaPredicted RBP9.63□□□□□ -0.87
USP3-215ENST00000559771 CDC42BPBQ9Y5S2 1711 aa9.62□□□□□ -0.87
USP3-215ENST00000559771 FER1L4A9Z1Z3 1794 aa9.62□□□□□ -0.87
USP3-215ENST00000559771 KDM5CP41229 1560 aa9.62□□□□□ -0.87
USP3-215ENST00000559771 ARHGEF12Q9NZN5 1544 aa9.61□□□□□ -0.87
USP3-215ENST00000559771 ATP10AO60312 1499 aa9.6□□□□□ -0.87
USP3-215ENST00000559771 ATP1B4Q9UN42 357 aaPredicted RBP9.6□□□□□ -0.87
USP3-215ENST00000559771 DIP2CQ9Y2E4 1556 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 C9orf84Q5VXU9 1444 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 EFCAB2Q5VUJ9 269 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 THSD4Q6ZMP0 1018 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 ARHGAP5Q13017 1502 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 PREX2Q70Z35 1606 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 ZNF518AQ6AHZ1 1483 aa9.59□□□□□ -0.87
USP3-215ENST00000559771 CASKIN1Q8WXD9 1431 aa9.58□□□□□ -0.88
USP3-215ENST00000559771 ABCA6Q8N139 1617 aa9.58□□□□□ -0.88
USP3-215ENST00000559771 HSPA2P54652 639 aa9.58□□□□□ -0.88
USP3-215ENST00000559771 TRAF7Q6Q0C0 670 aa9.58□□□□□ -0.88
USP3-215ENST00000559771 AFAP1Q8N556 730 aa9.58□□□□□ -0.88
USP3-215ENST00000559771 CDC42BPAQ5VT25 1732 aa9.58□□□□□ -0.88
USP3-215ENST00000559771 ABCC1P33527 1531 aa9.57□□□□□ -0.88
USP3-215ENST00000559771 MLECQ14165 292 aa9.57□□□□□ -0.88
USP3-215ENST00000559771 FBXO41Q8TF61 875 aa9.57□□□□□ -0.88
USP3-215ENST00000559771 CDK11AQ9UQ88 783 aaPredicted RBP9.57□□□□□ -0.88
USP3-215ENST00000559771 VPS9D1Q9Y2B5 631 aa9.57□□□□□ -0.88
USP3-215ENST00000559771 REREQ9P2R6 1566 aa9.57□□□□□ -0.88
USP3-215ENST00000559771 ITSN2Q9NZM3 1697 aa9.57□□□□□ -0.88
USP3-215ENST00000559771 TRAPPC8Q9Y2L5 1435 aa9.56□□□□□ -0.88
USP3-215ENST00000559771 PSDA5PKW4 1024 aaPredicted RBP9.56□□□□□ -0.88
USP3-215ENST00000559771 CLIP1P30622 1438 aa9.56□□□□□ -0.88
USP3-215ENST00000559771 KIDINS220Q9ULH0 1771 aa9.55□□□□□ -0.88
USP3-215ENST00000559771 PREX1Q8TCU6 1659 aa9.55□□□□□ -0.88
USP3-215ENST00000559771 CCDC18Q5T9S5 1454 aa9.55□□□□□ -0.88
USP3-215ENST00000559771 MLH3Q9UHC1 1453 aa9.55□□□□□ -0.88
USP3-215ENST00000559771 CEBPAP49715 358 aaPredicted RBP9.54□□□□□ -0.88
USP3-215ENST00000559771 VASPP50552 380 aaPredicted RBP9.54□□□□□ -0.88
USP3-215ENST00000559771 STRCQ7RTU9 1775 aa9.54□□□□□ -0.88
USP3-215ENST00000559771 FYCO1Q9BQS8 1478 aa9.53□□□□□ -0.88
USP3-215ENST00000559771 AGLP35573 1532 aa9.53□□□□□ -0.88
USP3-215ENST00000559771 C3P01024 1663 aa9.53□□□□□ -0.88
USP3-215ENST00000559771 STAC3Q96MF2 364 aa9.53□□□□□ -0.88
USP3-215ENST00000559771 SAMD9LQ8IVG5 1584 aa9.53□□□□□ -0.88
USP3-215ENST00000559771 BHMG1C9JSJ3 638 aaPredicted RBP9.52□□□□□ -0.89
USP3-215ENST00000559771 FBXO22Q8NEZ5 403 aa9.52□□□□□ -0.89
USP3-215ENST00000559771 CIZ1Q9ULV3 898 aaPredicted RBP9.52□□□□□ -0.89
USP3-215ENST00000559771 GPATCH8Q9UKJ3 1502 aaKnown RBP9.51□□□□□ -0.89
USP3-215ENST00000559771 FKBP8Q14318 412 aa9.5□□□□□ -0.89
USP3-215ENST00000559771 FBXO3Q9UK99 471 aa9.5□□□□□ -0.89
USP3-215ENST00000559771 ITGBL1O95965 494 aaPredicted RBP9.49□□□□□ -0.89
USP3-215ENST00000559771 ZNF775Q96BV0 537 aaPredicted RBP9.49□□□□□ -0.89
USP3-215ENST00000559771 SYCP2Q9BX26 1530 aa9.49□□□□□ -0.89
USP3-215ENST00000559771 INO80Q9ULG1 1556 aaPredicted RBP9.48□□□□□ -0.89
USP3-215ENST00000559771 SETD1BQ9UPS6 1966 aaKnown RBP9.48□□□□□ -0.89
USP3-215ENST00000559771 LAPTM4AQ15012 233 aa9.47□□□□□ -0.89
USP3-215ENST00000559771 CERKQ8TCT0 537 aa9.47□□□□□ -0.89
USP3-215ENST00000559771 KCNK17Q96T54 332 aa9.47□□□□□ -0.89
USP3-215ENST00000559771 PLXNC1O60486 1568 aa9.46□□□□□ -0.89
USP3-215ENST00000559771 SUPT6HQ7KZ85 1726 aaKnown RBP9.46□□□□□ -0.89
USP3-215ENST00000559771 HNRNPMP52272 730 aaKnown RBP eCLIP9.46□□□□□ -0.94e-6■■□□□ 12
USP3-215ENST00000559771 UHRF1BP1Q6BDS2 1440 aa9.46□□□□□ -0.9
USP3-215ENST00000559771 MROH2AA6NES4 1674 aa9.45□□□□□ -0.9
USP3-215ENST00000559771 KIAA1107Q9UPP5 1409 aa9.45□□□□□ -0.9
USP3-215ENST00000559771 ATP7AQ04656 1500 aa9.45□□□□□ -0.9
USP3-215ENST00000559771 TIAM1Q13009 1591 aa9.45□□□□□ -0.9
USP3-215ENST00000559771 GFRA3O60609 400 aa9.44□□□□□ -0.9
USP3-215ENST00000559771 ZNF777Q9ULD5 760 aaPredicted RBP9.44□□□□□ -0.9
USP3-215ENST00000559771 CLTCQ00610 1675 aaKnown RBP9.43□□□□□ -0.9
USP3-215ENST00000559771 MBD5Q9P267 1494 aa9.43□□□□□ -0.9
USP3-215ENST00000559771 CNTLNQ9NXG0 1405 aa9.43□□□□□ -0.9
USP3-215ENST00000559771 PTCD2Q8WV60 388 aaKnown RBP9.43□□□□□ -0.9
USP3-215ENST00000559771 WNT2BQ93097 391 aa9.43□□□□□ -0.9
USP3-215ENST00000559771 LTBP4Q8N2S1 1624 aa9.42□□□□□ -0.9
USP3-215ENST00000559771 SPAG9O60271 1321 aaKnown RBP9.42□□□□□ -0.9
USP3-215ENST00000559771 ZNF644Q9H582 1327 aaPredicted RBP9.42□□□□□ -0.9
USP3-215ENST00000559771 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.42□□□□□ -0.9
USP3-215ENST00000559771 PPP4R3BQ5MIZ7 849 aa9.42□□□□□ -0.9
USP3-215ENST00000559771 ZFP91Q96JP5 570 aaPredicted RBP9.42□□□□□ -0.9
USP3-215ENST00000559771 SLC4A5Q9BY07 1137 aa9.42□□□□□ -0.9
USP3-215ENST00000559771 A2MP01023 1474 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 PLEKHH2Q8IVE3 1493 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 PTPRTO14522 1441 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 NPATQ14207 1427 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 NCOA1Q15788 1441 aa9.41□□□□□ -0.9
USP3-215ENST00000559771 ZMYM3Q14202 1370 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms