RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 WFS1O76024 890 aa4.2□□□□□ -1.74
USP3-209ENST00000558925 PLA2G2CQ5R387 149 aa4.2□□□□□ -1.74
USP3-209ENST00000558925 SWT1Q5T5J6 900 aaKnown RBP4.2□□□□□ -1.74
USP3-209ENST00000558925 ZNF697Q5TEC3 545 aa4.2□□□□□ -1.74
USP3-209ENST00000558925 NBPF26B4DH59 902 aa4.19□□□□□ -1.74
USP3-209ENST00000558925 WIPF1O43516 503 aa4.19□□□□□ -1.74
USP3-209ENST00000558925 BLOC1S3Q6QNY0 202 aa4.19□□□□□ -1.74
USP3-209ENST00000558925 GMPR2Q9P2T1 348 aaKnown RBP4.19□□□□□ -1.74
USP3-209ENST00000558925 STK17AQ9UEE5 414 aa4.19□□□□□ -1.74
USP3-209ENST00000558925 SLC24A1O60721 1099 aa4.18□□□□□ -1.74
USP3-209ENST00000558925 S1PR4O95977 384 aa4.18□□□□□ -1.74
USP3-209ENST00000558925 PDIA6Q15084 440 aa4.18□□□□□ -1.74
USP3-209ENST00000558925 PKD2L1Q9P0L9 805 aa4.18□□□□□ -1.74
USP3-209ENST00000558925 ANKLE1Q8NAG6 615 aa4.17□□□□□ -1.74
USP3-209ENST00000558925 TTC13Q8NBP0 860 aa4.17□□□□□ -1.74
USP3-209ENST00000558925 CRIPAKQ8N1N5 446 aa4.16□□□□□ -1.74
USP3-209ENST00000558925 PCDHB3Q9Y5E6 796 aa4.16□□□□□ -1.74
USP3-209ENST00000558925 NPDC1Q9NQX5 325 aaPredicted RBP4.15□□□□□ -1.75
USP3-209ENST00000558925 C11orf95C9JLR9 678 aaPredicted RBP4.14□□□□□ -1.75
USP3-209ENST00000558925 AVPP01185 164 aa4.14□□□□□ -1.75
USP3-209ENST00000558925 OSBPP22059 807 aa4.14□□□□□ -1.75
USP3-209ENST00000558925 LORP23490 312 aaPredicted RBP4.14□□□□□ -1.75
USP3-209ENST00000558925 PADI6Q6TGC4 694 aa4.14□□□□□ -1.75
USP3-209ENST00000558925 SLF2Q8IX21 1173 aa4.14□□□□□ -1.75
USP3-209ENST00000558925 CERKQ8TCT0 537 aa4.14□□□□□ -1.75
USP3-209ENST00000558925 EYA1Q99502 592 aa4.14□□□□□ -1.75
USP3-209ENST00000558925 GRXCR2A6NFK2 248 aa4.13□□□□□ -1.75
USP3-209ENST00000558925 HDGFP51858 240 aaKnown RBP4.13□□□□□ -1.75
USP3-209ENST00000558925 INSM1Q01101 510 aaPredicted RBP4.13□□□□□ -1.75
USP3-209ENST00000558925 FOXC1Q12948 553 aa4.13□□□□□ -1.75
USP3-209ENST00000558925 TOR4AQ9NXH8 423 aa4.13□□□□□ -1.75
USP3-209ENST00000558925 RBM27Q9P2N5 1060 aaKnown RBP4.13□□□□□ -1.75
USP3-209ENST00000558925 SNRPBP14678 240 aaKnown RBP4.12□□□□□ -1.75
USP3-209ENST00000558925 AXIN1O15169 862 aa4.11□□□□□ -1.75
USP3-209ENST00000558925 TERTO14746 1132 aaKnown RBP4.1□□□□□ -1.75
USP3-209ENST00000558925 ACTN4O43707 911 aaKnown RBP4.1□□□□□ -1.75
USP3-209ENST00000558925 ADH1BP00325 375 aa4.1□□□□□ -1.75
USP3-209ENST00000558925 NECTIN2Q92692 538 aa4.1□□□□□ -1.75
USP3-209ENST00000558925 SPDYE16A6NNV3 312 aaPredicted RBP4.09□□□□□ -1.75
USP3-209ENST00000558925 SMCPP49901 116 aaPredicted RBP4.09□□□□□ -1.75
USP3-209ENST00000558925 SLC10A3P09131 477 aa4.08□□□□□ -1.76
USP3-209ENST00000558925 SUZ12Q15022 739 aaKnown RBP4.08□□□□□ -1.76
USP3-209ENST00000558925 PRR14Q9BWN1 585 aa4.08□□□□□ -1.76
USP3-209ENST00000558925 SLC6A16Q9GZN6 736 aa4.08□□□□□ -1.76
USP3-209ENST00000558925 CFHP08603 1231 aa4.07□□□□□ -1.76
USP3-209ENST00000558925 CTC1Q2NKJ3 1217 aa4.07□□□□□ -1.76
USP3-209ENST00000558925 LMOD2Q6P5Q4 547 aa4.07□□□□□ -1.76
USP3-209ENST00000558925 ATP13A2Q9NQ11 1180 aa4.07□□□□□ -1.76
USP3-209ENST00000558925 SMPD1P17405 629 aa4.06□□□□□ -1.76
USP3-209ENST00000558925 TRIM47Q96LD4 638 aa4.06□□□□□ -1.76
USP3-209ENST00000558925 TMEM134Q9H6X4 195 aa4.06□□□□□ -1.76
USP3-209ENST00000558925 GMPRP36959 345 aa4.05□□□□□ -1.76
USP3-209ENST00000558925 FAM161AQ3B820 660 aa4.05□□□□□ -1.76
USP3-209ENST00000558925 PUS10Q3MIT2 529 aaKnown RBP4.05□□□□□ -1.76
USP3-209ENST00000558925 SCUBE3Q8IX30 993 aa4.05□□□□□ -1.76
USP3-209ENST00000558925 CYP4X1Q8N118 509 aa4.05□□□□□ -1.76
USP3-209ENST00000558925 ARIH1Q9Y4X5 557 aaPredicted RBP4.05□□□□□ -1.76
USP3-209ENST00000558925 DNAJB2P25686 324 aa4.04□□□□□ -1.76
USP3-209ENST00000558925 RPIAP49247 311 aa4.04□□□□□ -1.76
USP3-209ENST00000558925 FCF1Q9Y324 198 aaKnown RBP4.04□□□□□ -1.76
USP3-209ENST00000558925 J3QL48 77 aa4.03□□□□□ -1.76
USP3-209ENST00000558925 NR1I2O75469 434 aa4.03□□□□□ -1.76
USP3-209ENST00000558925 KMT5BQ4FZB7 885 aa4.03□□□□□ -1.76
USP3-209ENST00000558925 SPSB2Q99619 263 aa4.03□□□□□ -1.76
USP3-209ENST00000558925 PRDM9Q9NQV7 894 aa4.03□□□□□ -1.76
USP3-209ENST00000558925 ADGRG1Q9Y653 693 aa4.03□□□□□ -1.76
USP3-209ENST00000558925 RCCD1A6NED2 376 aa4.02□□□□□ -1.77
USP3-209ENST00000558925 SLC4A3P48751 1232 aa4.02□□□□□ -1.77
USP3-209ENST00000558925 E2F4Q16254 413 aa4.02□□□□□ -1.77
USP3-209ENST00000558925 FAM160A2Q8N612 972 aaPredicted RBP4.02□□□□□ -1.77
USP3-209ENST00000558925 ZSCAN1Q8NBB4 408 aa4.02□□□□□ -1.77
USP3-209ENST00000558925 HPS1Q92902 700 aa4.02□□□□□ -1.77
USP3-209ENST00000558925 THAP11Q96EK4 314 aa4.02□□□□□ -1.77
USP3-209ENST00000558925 ERBB4Q15303 1308 aa4.01□□□□□ -1.77
USP3-209ENST00000558925 TTC24A2A3L6 582 aaPredicted RBP4.01□□□□□ -1.77
USP3-209ENST00000558925 VEGFBP49765 207 aa4.01□□□□□ -1.77
USP3-209ENST00000558925 GSK3AP49840 483 aa4.01□□□□□ -1.77
USP3-209ENST00000558925 CD2BP2O95400 341 aaKnown RBP4□□□□□ -1.77
USP3-209ENST00000558925 PTGDRQ13258 359 aa4□□□□□ -1.77
USP3-209ENST00000558925 WNT7AO00755 349 aa3.99□□□□□ -1.77
USP3-209ENST00000558925 MLLT3P42568 568 aaPredicted RBP3.99□□□□□ -1.77
USP3-209ENST00000558925 MRGPRX2Q96LB1 330 aa3.99□□□□□ -1.77
USP3-209ENST00000558925 SENP2Q9HC62 589 aa3.99□□□□□ -1.77
USP3-209ENST00000558925 FAM181BA6NEQ2 426 aa3.98□□□□□ -1.77
USP3-209ENST00000558925 DCAF8L2P0C7V8 631 aa3.98□□□□□ -1.77
USP3-209ENST00000558925 MORN1Q5T089 497 aa3.98□□□□□ -1.77
USP3-209ENST00000558925 SNIP1Q8TAD8 396 aaKnown RBP3.98□□□□□ -1.77
USP3-209ENST00000558925 RBM46Q8TBY0 533 aaKnown RBP3.98□□□□□ -1.77
USP3-209ENST00000558925 NXF1Q9UBU9 619 aaKnown RBP3.98□□□□□ -1.77
USP3-209ENST00000558925 BMP1P13497 986 aa3.97□□□□□ -1.77
USP3-209ENST00000558925 KCTD17Q8N5Z5 321 aa3.97□□□□□ -1.77
USP3-209ENST00000558925 H3BM21 787 aa3.96□□□□□ -1.78
USP3-209ENST00000558925 PLCB2Q00722 1185 aa3.96□□□□□ -1.78
USP3-209ENST00000558925 FUT2Q10981 343 aa3.96□□□□□ -1.78
USP3-209ENST00000558925 TRIM46Q7Z4K8 759 aa3.96□□□□□ -1.78
USP3-209ENST00000558925 SLC27A5Q9Y2P5 690 aa3.96□□□□□ -1.78
USP3-209ENST00000558925 TRIM32Q13049 653 aa3.95□□□□□ -1.78
USP3-209ENST00000558925 RNF19BQ6ZMZ0 732 aa3.95□□□□□ -1.78
USP3-209ENST00000558925 PXYLP1Q8TE99 480 aa3.95□□□□□ -1.78
USP3-209ENST00000558925 SLC16A10Q8TF71 515 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms