RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DEPDC5O75140 1603 aa16.24■□□□□ 0.19
LDLR-205ENST00000557933 POGZQ7Z3K3 1410 aa16.24■□□□□ 0.19
LDLR-205ENST00000557933 PER1O15534 1290 aaPredicted RBP16.23■□□□□ 0.19
LDLR-205ENST00000557933 DAXXQ9UER7 740 aaPredicted RBP16.23■□□□□ 0.19
LDLR-205ENST00000557933 MLH3Q9UHC1 1453 aa16.23■□□□□ 0.19
LDLR-205ENST00000557933 TRAPPC8Q9Y2L5 1435 aa16.23■□□□□ 0.19
LDLR-205ENST00000557933 HECW2Q9P2P5 1572 aa16.22■□□□□ 0.19
LDLR-205ENST00000557933 KIDINS220Q9ULH0 1771 aa16.22■□□□□ 0.19
LDLR-205ENST00000557933 NFKBIBQ15653 356 aa16.22■□□□□ 0.19
LDLR-205ENST00000557933 IQGAP3Q86VI3 1631 aa16.2■□□□□ 0.18
LDLR-205ENST00000557933 FRAT1Q92837 279 aaPredicted RBP16.2■□□□□ 0.18
LDLR-205ENST00000557933 SCAPERQ9BY12 1400 aa16.19■□□□□ 0.18
LDLR-205ENST00000557933 EIF5BO60841 1220 aaKnown RBP16.19■□□□□ 0.18
LDLR-205ENST00000557933 SENP3Q9H4L4 574 aaPredicted RBP16.19■□□□□ 0.18
LDLR-205ENST00000557933 RALGAPBQ86X10 1494 aa16.19■□□□□ 0.18
LDLR-205ENST00000557933 FRMPD1Q5SYB0 1578 aa16.19■□□□□ 0.18
LDLR-205ENST00000557933 FRAT2O75474 233 aaPredicted RBP16.18■□□□□ 0.18
LDLR-205ENST00000557933 REREQ9P2R6 1566 aa16.18■□□□□ 0.18
LDLR-205ENST00000557933 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
LDLR-205ENST00000557933 RNF17Q9BXT8 1623 aaKnown RBP16.17■□□□□ 0.18
LDLR-205ENST00000557933 NEUROD2Q15784 382 aa16.17■□□□□ 0.18
LDLR-205ENST00000557933 POLR1AO95602 1720 aaPredicted RBP16.16■□□□□ 0.18
LDLR-205ENST00000557933 BCAR3O75815 825 aa16.16■□□□□ 0.18
LDLR-205ENST00000557933 PARD3Q8TEW0 1356 aa16.16■□□□□ 0.18
LDLR-205ENST00000557933 WDR43Q15061 677 aaKnown RBP eCLIP16.16■□□□□ 0.18
LDLR-205ENST00000557933 ARID4BQ4LE39 1312 aaPredicted RBP16.16■□□□□ 0.18
LDLR-205ENST00000557933 VWDEQ8N2E2 1590 aa16.15■□□□□ 0.18
LDLR-205ENST00000557933 TESK2Q96S53 571 aa16.15■□□□□ 0.18
LDLR-205ENST00000557933 PLEKHH1Q9ULM0 1364 aa16.15■□□□□ 0.18
LDLR-205ENST00000557933 TNNT2P45379 298 aaPredicted RBP16.15■□□□□ 0.18
LDLR-205ENST00000557933 PPM1GO15355 546 aaPredicted RBP16.14■□□□□ 0.17
LDLR-205ENST00000557933 GSE1Q14687 1217 aa16.13■□□□□ 0.17
LDLR-205ENST00000557933 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
LDLR-205ENST00000557933 CCDC144AA2RUR9 1427 aa16.13■□□□□ 0.17
LDLR-205ENST00000557933 PRDM15P57071 1507 aaPredicted RBP16.13■□□□□ 0.17
LDLR-205ENST00000557933 MS4A1P11836 297 aa16.13■□□□□ 0.17
LDLR-205ENST00000557933 PDE3BQ13370 1112 aa16.12■□□□□ 0.17
LDLR-205ENST00000557933 SLKQ9H2G2 1235 aaPredicted RBP16.12■□□□□ 0.17
LDLR-205ENST00000557933 ABCA6Q8N139 1617 aa16.12■□□□□ 0.17
LDLR-205ENST00000557933 SPRYD3Q8NCJ5 442 aa16.12■□□□□ 0.17
LDLR-205ENST00000557933 SPAG9O60271 1321 aaKnown RBP16.11■□□□□ 0.17
LDLR-205ENST00000557933 APAF1O14727 1248 aa16.11■□□□□ 0.17
LDLR-205ENST00000557933 KNSTRNQ9Y448 316 aa16.11■□□□□ 0.17
LDLR-205ENST00000557933 FAM135AQ9P2D6 1515 aa16.11■□□□□ 0.17
LDLR-205ENST00000557933 C8orf34Q49A92 452 aa16.11■□□□□ 0.17
LDLR-205ENST00000557933 DUSP27Q5VZP5 1158 aa16.11■□□□□ 0.17
LDLR-205ENST00000557933 DIP2CQ9Y2E4 1556 aa16.11■□□□□ 0.17
LDLR-205ENST00000557933 UHRF1BP1Q6BDS2 1440 aa16.1■□□□□ 0.17
LDLR-205ENST00000557933 TMF1P82094 1093 aa16.1■□□□□ 0.17
LDLR-205ENST00000557933 PPP2R1AP30153 589 aa16.09■□□□□ 0.17
LDLR-205ENST00000557933 BCL2L13Q9BXK5 485 aa16.09■□□□□ 0.17
LDLR-205ENST00000557933 MROH1Q8NDA8 1641 aa16.09■□□□□ 0.17
LDLR-205ENST00000557933 LMTK2Q8IWU2 1503 aa16.09■□□□□ 0.17
LDLR-205ENST00000557933 SEC24BO95487 1268 aa16.09■□□□□ 0.17
LDLR-205ENST00000557933 RRP7AQ9Y3A4 280 aaKnown RBP16.09■□□□□ 0.17
LDLR-205ENST00000557933 DNAJC5Q9H3Z4 198 aa16.08■□□□□ 0.16
LDLR-205ENST00000557933 TET3O43151 1660 aa16.07■□□□□ 0.16
LDLR-205ENST00000557933 PRAG1Q86YV5 1406 aa16.07■□□□□ 0.16
LDLR-205ENST00000557933 PANK1Q8TE04 598 aa16.07■□□□□ 0.16
LDLR-205ENST00000557933 DDRGK1Q96HY6 314 aa16.07■□□□□ 0.16
LDLR-205ENST00000557933 ATP10AO60312 1499 aa16.07■□□□□ 0.16
LDLR-205ENST00000557933 ZC3H13Q5T200 1668 aaKnown RBP16.07■□□□□ 0.16
LDLR-205ENST00000557933 IGHDP01880 384 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 GOLGA2Q08379 1002 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 KDM2BQ8NHM5 1336 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 TSPOAP1O95153 1857 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 FAM69CQ0P6D2 419 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 FAM161AQ3B820 660 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 A2MP01023 1474 aa16.06■□□□□ 0.16
LDLR-205ENST00000557933 TNNQ9UQP3 1299 aa16.05■□□□□ 0.16
LDLR-205ENST00000557933 COG6Q9Y2V7 657 aa16.05■□□□□ 0.16
LDLR-205ENST00000557933 CANXP27824 592 aaKnown RBP16.05■□□□□ 0.16
LDLR-205ENST00000557933 USP35Q9P2H5 1018 aa16.05■□□□□ 0.16
LDLR-205ENST00000557933 AGLP35573 1532 aa16.04■□□□□ 0.16
LDLR-205ENST00000557933 CLUAP1Q96AJ1 413 aa16.04■□□□□ 0.16
LDLR-205ENST00000557933 NEURL4Q96JN8 1562 aa16.03■□□□□ 0.16
LDLR-205ENST00000557933 CENPQQ7L2Z9 268 aaPredicted RBP16.03■□□□□ 0.16
LDLR-205ENST00000557933 ARHGEF40Q8TER5 1519 aa16.03■□□□□ 0.16
LDLR-205ENST00000557933 WASHC2CQ9Y4E1 1318 aa16.03■□□□□ 0.16
LDLR-205ENST00000557933 AFAP1Q8N556 730 aa16.03■□□□□ 0.16
LDLR-205ENST00000557933 POGKQ9P215 609 aa16.02■□□□□ 0.16
LDLR-205ENST00000557933 PLA2R1Q13018 1463 aa16.01■□□□□ 0.15
LDLR-205ENST00000557933 AMER1Q5JTC6 1135 aaPredicted RBP15.99■□□□□ 0.15
LDLR-205ENST00000557933 E9PCH4 1651 aa15.98■□□□□ 0.15
LDLR-205ENST00000557933 BLMP54132 1417 aaPredicted RBP15.98■□□□□ 0.15
LDLR-205ENST00000557933 GZF1Q9H116 711 aaPredicted RBP15.98■□□□□ 0.15
LDLR-205ENST00000557933 COL17A1Q9UMD9 1497 aaPredicted RBP15.98■□□□□ 0.15
LDLR-205ENST00000557933 EFCAB6Q5THR3 1501 aa15.97■□□□□ 0.15
LDLR-205ENST00000557933 SLFN5Q08AF3 891 aa15.97■□□□□ 0.15
LDLR-205ENST00000557933 SPHKAPQ2M3C7 1700 aa15.96■□□□□ 0.15
LDLR-205ENST00000557933 TRPM2O94759 1503 aa15.95■□□□□ 0.14
LDLR-205ENST00000557933 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.95■□□□□ 0.14
LDLR-205ENST00000557933 PTPRTO14522 1441 aa15.94■□□□□ 0.14
LDLR-205ENST00000557933 KANK1Q14678 1352 aa15.93■□□□□ 0.14
LDLR-205ENST00000557933 CEP152O94986 1710 aa15.93■□□□□ 0.14
LDLR-205ENST00000557933 CHGAP10645 457 aaKnown RBP15.92■□□□□ 0.14
LDLR-205ENST00000557933 CAMSAP1Q5T5Y3 1602 aa15.92■□□□□ 0.14
LDLR-205ENST00000557933 CFAP70Q5T0N1 1121 aa15.92■□□□□ 0.14
LDLR-205ENST00000557933 ABCC3O15438 1527 aa15.91■□□□□ 0.14
LDLR-205ENST00000557933 TRPM1Q7Z4N2 1603 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms