RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 RTEL1-TNFRSF6BF6WH68 1400 aa23.46■■□□□ 1.35
XRCC3-218ENST00000557439 ADGRF5Q8IZF2 1346 aa23.46■■□□□ 1.35
XRCC3-218ENST00000557439 WDR43Q15061 677 aaKnown RBP eCLIP23.46■■□□□ 1.35
XRCC3-218ENST00000557439 ATP7AQ04656 1500 aa23.45■■□□□ 1.34
XRCC3-218ENST00000557439 ANP32AP39687 249 aaKnown RBP23.45■■□□□ 1.34
XRCC3-218ENST00000557439 ZMYM4Q5VZL5 1548 aa23.44■■□□□ 1.34
XRCC3-218ENST00000557439 KANK1Q14678 1352 aa23.42■■□□□ 1.34
XRCC3-218ENST00000557439 DEPDC5O75140 1603 aa23.41■■□□□ 1.34
XRCC3-218ENST00000557439 TET3O43151 1660 aa23.41■■□□□ 1.34
XRCC3-218ENST00000557439 ADGRL1O94910 1474 aa23.41■■□□□ 1.34
XRCC3-218ENST00000557439 IPO9Q96P70 1041 aaKnown RBP23.41■■□□□ 1.34
XRCC3-218ENST00000557439 CHGAP10645 457 aaKnown RBP23.4■■□□□ 1.34
XRCC3-218ENST00000557439 MYOM1P52179 1685 aa23.39■■□□□ 1.33
XRCC3-218ENST00000557439 INO80Q9ULG1 1556 aaPredicted RBP23.39■■□□□ 1.33
XRCC3-218ENST00000557439 DUSP27Q5VZP5 1158 aa23.38■■□□□ 1.33
XRCC3-218ENST00000557439 ASXL1Q8IXJ9 1541 aa23.37■■□□□ 1.33
XRCC3-218ENST00000557439 SYNMO15061 1565 aa23.37■■□□□ 1.33
XRCC3-218ENST00000557439 PDE4AP27815 886 aa23.37■■□□□ 1.33
XRCC3-218ENST00000557439 CDCA8Q53HL2 280 aa23.37■■□□□ 1.33
XRCC3-218ENST00000557439 ABCA9Q8IUA7 1624 aa23.36■■□□□ 1.33
XRCC3-218ENST00000557439 BCL11AQ9H165 835 aa23.36■■□□□ 1.33
XRCC3-218ENST00000557439 CFAP65Q6ZU64 1925 aaKnown RBP23.36■■□□□ 1.33
XRCC3-218ENST00000557439 CARD14Q9BXL6 1004 aa23.35■■□□□ 1.33
XRCC3-218ENST00000557439 SPINK5Q9NQ38 1064 aaPredicted RBP23.35■■□□□ 1.33
XRCC3-218ENST00000557439 MROH1Q8NDA8 1641 aa23.35■■□□□ 1.33
XRCC3-218ENST00000557439 ARAP3Q8WWN8 1544 aa23.35■■□□□ 1.33
XRCC3-218ENST00000557439 TCERG1O14776 1098 aaKnown RBP23.35■■□□□ 1.33
XRCC3-218ENST00000557439 VWDEQ8N2E2 1590 aa23.34■■□□□ 1.33
XRCC3-218ENST00000557439 INSRP06213 1382 aa23.34■■□□□ 1.33
XRCC3-218ENST00000557439 ZBTB47Q9UFB7 747 aaPredicted RBP23.34■■□□□ 1.33
XRCC3-218ENST00000557439 ABCA6Q8N139 1617 aa23.33■■□□□ 1.33
XRCC3-218ENST00000557439 APAF1O14727 1248 aa23.33■■□□□ 1.32
XRCC3-218ENST00000557439 EIF3AQ14152 1382 aaKnown RBP23.32■■□□□ 1.32
XRCC3-218ENST00000557439 ASXL2Q76L83 1435 aa23.32■■□□□ 1.32
XRCC3-218ENST00000557439 ERVK-7P63135 1459 aa23.32■■□□□ 1.32
XRCC3-218ENST00000557439 GOLGA2Q08379 1002 aa23.32■■□□□ 1.32
XRCC3-218ENST00000557439 SENP3Q9H4L4 574 aaPredicted RBP23.32■■□□□ 1.32
XRCC3-218ENST00000557439 ZNF521Q96K83 1311 aa23.31■■□□□ 1.32
XRCC3-218ENST00000557439 MROH2AA6NES4 1674 aa23.3■■□□□ 1.32
XRCC3-218ENST00000557439 BACH2Q9BYV9 841 aa23.3■■□□□ 1.32
XRCC3-218ENST00000557439 DMRT2Q9Y5R5 561 aa23.3■■□□□ 1.32
XRCC3-218ENST00000557439 KDM5AP29375 1690 aaKnown RBP23.3■■□□□ 1.32
XRCC3-218ENST00000557439 MAP3K4Q9Y6R4 1608 aa23.29■■□□□ 1.32
XRCC3-218ENST00000557439 TNNT2P45379 298 aaPredicted RBP23.29■■□□□ 1.32
XRCC3-218ENST00000557439 TRAK1Q9UPV9 953 aa23.29■■□□□ 1.32
XRCC3-218ENST00000557439 GGT6Q6P531 493 aa23.29■■□□□ 1.32
XRCC3-218ENST00000557439 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
XRCC3-218ENST00000557439 STAC3Q96MF2 364 aa23.27■■□□□ 1.32
XRCC3-218ENST00000557439 PPRC1Q5VV67 1664 aaKnown RBP23.27■■□□□ 1.32
XRCC3-218ENST00000557439 PIK3C2GO75747 1445 aa23.27■■□□□ 1.32
XRCC3-218ENST00000557439 NOS1P29475 1434 aa23.27■■□□□ 1.32
XRCC3-218ENST00000557439 TMEM132EQ6IEE7 984 aa23.27■■□□□ 1.32
XRCC3-218ENST00000557439 KIDINS220Q9ULH0 1771 aa23.26■■□□□ 1.31
XRCC3-218ENST00000557439 SLFN5Q08AF3 891 aa23.26■■□□□ 1.31
XRCC3-218ENST00000557439 KIF1BO60333 1816 aa23.25■■□□□ 1.31
XRCC3-218ENST00000557439 DEKP35659 375 aaKnown RBP23.25■■□□□ 1.31
XRCC3-218ENST00000557439 EFCAB6Q5THR3 1501 aa23.24■■□□□ 1.31
XRCC3-218ENST00000557439 BCAR3O75815 825 aa23.23■■□□□ 1.31
XRCC3-218ENST00000557439 KIAA1210Q9ULL0 1709 aa23.22■■□□□ 1.31
XRCC3-218ENST00000557439 SLC12A5Q9H2X9 1139 aa23.22■■□□□ 1.31
XRCC3-218ENST00000557439 MYOM2P54296 1465 aa23.22■■□□□ 1.31
XRCC3-218ENST00000557439 LAS1LQ9Y4W2 734 aaKnown RBP23.2■■□□□ 1.3
XRCC3-218ENST00000557439 MS4A1P11836 297 aa23.2■■□□□ 1.3
XRCC3-218ENST00000557439 NPC1L1Q9UHC9 1359 aa23.2■■□□□ 1.3
XRCC3-218ENST00000557439 KDM2BQ8NHM5 1336 aa23.19■■□□□ 1.3
XRCC3-218ENST00000557439 CENPJQ9HC77 1338 aaPredicted RBP23.19■■□□□ 1.3
XRCC3-218ENST00000557439 NEUROD2Q15784 382 aa23.19■■□□□ 1.3
XRCC3-218ENST00000557439 IFT172Q9UG01 1749 aa23.18■■□□□ 1.3
XRCC3-218ENST00000557439 RRP7AQ9Y3A4 280 aaKnown RBP23.18■■□□□ 1.3
XRCC3-218ENST00000557439 NPATQ14207 1427 aa23.17■■□□□ 1.3
XRCC3-218ENST00000557439 TRMT2AQ8IZ69 625 aaKnown RBP23.16■■□□□ 1.3
XRCC3-218ENST00000557439 NSD3Q9BZ95 1437 aa23.15■■□□□ 1.3
XRCC3-218ENST00000557439 ZNF518AQ6AHZ1 1483 aa23.14■■□□□ 1.3
XRCC3-218ENST00000557439 RGS3P49796 1198 aa23.13■■□□□ 1.29
XRCC3-218ENST00000557439 MORC1Q86VD1 984 aa23.13■■□□□ 1.29
XRCC3-218ENST00000557439 RAPGEF3O95398 923 aa23.12■■□□□ 1.29
XRCC3-218ENST00000557439 SAFB2Q14151 953 aaKnown RBP eCLIP23.12■■□□□ 1.29
XRCC3-218ENST00000557439 NRXN1Q9ULB1 1477 aa23.12■■□□□ 1.29
XRCC3-218ENST00000557439 ADGRB3O60242 1522 aa23.12■■□□□ 1.29
XRCC3-218ENST00000557439 NPM1P06748 294 aaKnown RBP eCLIP23.12■■□□□ 1.29
XRCC3-218ENST00000557439 NEURL4Q96JN8 1562 aa23.11■■□□□ 1.29
XRCC3-218ENST00000557439 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.11■■□□□ 1.29
XRCC3-218ENST00000557439 NKTRP30414 1462 aaKnown RBP23.11■■□□□ 1.29
XRCC3-218ENST00000557439 FRMPD1Q5SYB0 1578 aa23.1■■□□□ 1.29
XRCC3-218ENST00000557439 CENPQQ7L2Z9 268 aaPredicted RBP23.1■■□□□ 1.29
XRCC3-218ENST00000557439 CD109Q6YHK3 1445 aa23.1■■□□□ 1.29
XRCC3-218ENST00000557439 SLC4A3P48751 1232 aa23.1■■□□□ 1.29
XRCC3-218ENST00000557439 C14orf93Q9H972 538 aaKnown RBP23.1■■□□□ 1.29
XRCC3-218ENST00000557439 E9PSI1 815 aa23.08■■□□□ 1.29
XRCC3-218ENST00000557439 WWC1Q8IX03 1113 aa23.08■■□□□ 1.29
XRCC3-218ENST00000557439 RTL5Q5HYW3 569 aaPredicted RBP23.07■■□□□ 1.28
XRCC3-218ENST00000557439 POGZQ7Z3K3 1410 aa23.06■■□□□ 1.28
XRCC3-218ENST00000557439 LMTK2Q8IWU2 1503 aa23.06■■□□□ 1.28
XRCC3-218ENST00000557439 MYO3AQ8NEV4 1616 aa23.06■■□□□ 1.28
XRCC3-218ENST00000557439 PANK1Q8TE04 598 aa23.06■■□□□ 1.28
XRCC3-218ENST00000557439 QRICH2Q9H0J4 1663 aa23.06■■□□□ 1.28
XRCC3-218ENST00000557439 PPLO60437 1756 aa23.05■■□□□ 1.28
XRCC3-218ENST00000557439 SBNO2Q9Y2G9 1366 aa23.04■■□□□ 1.28
XRCC3-218ENST00000557439 ADGRB1O14514 1584 aa23.04■■□□□ 1.28
XRCC3-218ENST00000557439 POLR3AO14802 1390 aaPredicted RBP23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms