RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 IRX2Q9BZI1 471 aaPredicted RBP11.33□□□□□ -0.6
VRK1-207ENST00000557352 TMEM134Q9H6X4 195 aa11.33□□□□□ -0.6
VRK1-207ENST00000557352 OATP04181 439 aa11.32□□□□□ -0.6
VRK1-207ENST00000557352 SLC4A3P48751 1232 aa11.32□□□□□ -0.6
VRK1-207ENST00000557352 GPIHBP1Q8IV16 184 aa11.32□□□□□ -0.6
VRK1-207ENST00000557352 PXYLP1Q8TE99 480 aa11.31□□□□□ -0.6
VRK1-207ENST00000557352 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.29□□□□□ -0.6
VRK1-207ENST00000557352 METTL3Q86U44 580 aaKnown RBP11.29□□□□□ -0.6
VRK1-207ENST00000557352 NKX2-3Q8TAU0 364 aa11.29□□□□□ -0.6
VRK1-207ENST00000557352 TULP1O00294 542 aaPredicted RBP11.28□□□□□ -0.6
VRK1-207ENST00000557352 COPS2P61201 443 aa11.28□□□□□ -0.6
VRK1-207ENST00000557352 PPP1R18Q6NYC8 613 aa11.28□□□□□ -0.6
VRK1-207ENST00000557352 PRR14Q9BWN1 585 aa11.24□□□□□ -0.61
VRK1-207ENST00000557352 ZPR1O75312 459 aa11.23□□□□□ -0.61
VRK1-207ENST00000557352 SLC10A3P09131 477 aa11.23□□□□□ -0.61
VRK1-207ENST00000557352 PCDHB3Q9Y5E6 796 aa11.23□□□□□ -0.61
VRK1-207ENST00000557352 BLOC1S3Q6QNY0 202 aa11.22□□□□□ -0.61
VRK1-207ENST00000557352 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.22□□□□□ -0.61
VRK1-207ENST00000557352 ACTN4O43707 911 aaKnown RBP11.21□□□□□ -0.61
VRK1-207ENST00000557352 PHOX2BQ99453 314 aa11.2□□□□□ -0.62
VRK1-207ENST00000557352 PRKD2Q9BZL6 878 aa11.2□□□□□ -0.62
VRK1-207ENST00000557352 CFHP08603 1231 aa11.19□□□□□ -0.62
VRK1-207ENST00000557352 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.19□□□□□ -0.62
VRK1-207ENST00000557352 NLRP7Q8WX94 980 aa11.19□□□□□ -0.62
VRK1-207ENST00000557352 KMT5BQ4FZB7 885 aa11.18□□□□□ -0.62
VRK1-207ENST00000557352 MAP2K5Q13163 448 aa11.17□□□□□ -0.62
VRK1-207ENST00000557352 DAXXQ9UER7 740 aaPredicted RBP11.17□□□□□ -0.62
VRK1-207ENST00000557352 TMUB1Q9BVT8 246 aa11.15□□□□□ -0.62
VRK1-207ENST00000557352 V9GY48 417 aaPredicted RBP11.15□□□□□ -0.62
VRK1-207ENST00000557352 TLL1O43897 1013 aa11.14□□□□□ -0.63
VRK1-207ENST00000557352 GGCXP38435 758 aa11.14□□□□□ -0.63
VRK1-207ENST00000557352 RSPH4AQ5TD94 716 aa11.14□□□□□ -0.63
VRK1-207ENST00000557352 IRF6O14896 467 aa11.13□□□□□ -0.63
VRK1-207ENST00000557352 LMOD2Q6P5Q4 547 aa11.13□□□□□ -0.63
VRK1-207ENST00000557352 MINK1Q8N4C8 1332 aaPredicted RBP11.11□□□□□ -0.63
VRK1-207ENST00000557352 DDX11L8A8MPP1 907 aa11.11□□□□□ -0.63
VRK1-207ENST00000557352 Q6ZNB5 142 aa11.11□□□□□ -0.63
VRK1-207ENST00000557352 RNF223E7ERA6 249 aa11.1□□□□□ -0.63
VRK1-207ENST00000557352 GFRA3O60609 400 aa11.1□□□□□ -0.63
VRK1-207ENST00000557352 RDH13Q8NBN7 331 aa11.1□□□□□ -0.63
VRK1-207ENST00000557352 LAPTM4AQ15012 233 aa11.09□□□□□ -0.63
VRK1-207ENST00000557352 SULF1Q8IWU6 871 aa11.08□□□□□ -0.64
VRK1-207ENST00000557352 EMID1Q96A84 441 aaPredicted RBP11.08□□□□□ -0.64
VRK1-207ENST00000557352 NR1I2O75469 434 aa11.07□□□□□ -0.64
VRK1-207ENST00000557352 PUS10Q3MIT2 529 aaKnown RBP11.07□□□□□ -0.64
VRK1-207ENST00000557352 CCDC102AQ96A19 550 aa11.07□□□□□ -0.64
VRK1-207ENST00000557352 LCE2BO14633 110 aa11.06□□□□□ -0.64
VRK1-207ENST00000557352 S1PR4O95977 384 aa11.06□□□□□ -0.64
VRK1-207ENST00000557352 SCUBE3Q8IX30 993 aa11.06□□□□□ -0.64
VRK1-207ENST00000557352 ADH1BP00325 375 aa11.05□□□□□ -0.64
VRK1-207ENST00000557352 GCGRP47871 477 aa11.05□□□□□ -0.64
VRK1-207ENST00000557352 PPEF1O14829 653 aaPredicted RBP11.04□□□□□ -0.64
VRK1-207ENST00000557352 NRG2O14511 850 aaPredicted RBP11.03□□□□□ -0.64
VRK1-207ENST00000557352 MDM2Q00987 491 aaPredicted RBP11.03□□□□□ -0.64
VRK1-207ENST00000557352 FUT2Q10981 343 aa11.03□□□□□ -0.64
VRK1-207ENST00000557352 ANKLE1Q8NAG6 615 aa11.03□□□□□ -0.64
VRK1-207ENST00000557352 ZC3H15Q8WU90 426 aaKnown RBP11.02□□□□□ -0.65
VRK1-207ENST00000557352 ZMYND10O75800 440 aa11.01□□□□□ -0.65
VRK1-207ENST00000557352 SLC19A1P41440 591 aa11.01□□□□□ -0.65
VRK1-207ENST00000557352 MORN1Q5T089 497 aa11.01□□□□□ -0.65
VRK1-207ENST00000557352 BARGINQ6ZT62 677 aa11.01□□□□□ -0.65
VRK1-207ENST00000557352 CD46P15529 392 aa11□□□□□ -0.65
VRK1-207ENST00000557352 ATP6V1AP38606 617 aa11□□□□□ -0.65
VRK1-207ENST00000557352 SLC6A16Q9GZN6 736 aa11□□□□□ -0.65
VRK1-207ENST00000557352 LIAT1Q6ZQX7 453 aa10.99□□□□□ -0.65
VRK1-207ENST00000557352 KRI1Q8N9T8 703 aaKnown RBP10.99□□□□□ -0.65
VRK1-207ENST00000557352 PDZRN3Q9UPQ7 1066 aa10.99□□□□□ -0.65
VRK1-207ENST00000557352 SPRYD7Q5W111 196 aa10.98□□□□□ -0.65
VRK1-207ENST00000557352 TRAF7Q6Q0C0 670 aa10.98□□□□□ -0.65
VRK1-207ENST00000557352 TRIM67Q6ZTA4 783 aa10.98□□□□□ -0.65
VRK1-207ENST00000557352 THAP11Q96EK4 314 aa10.98□□□□□ -0.65
VRK1-207ENST00000557352 SPSB2Q99619 263 aa10.98□□□□□ -0.65
VRK1-207ENST00000557352 GPCPD1Q9NPB8 672 aa10.97□□□□□ -0.65
VRK1-207ENST00000557352 CLCN1P35523 988 aa10.96□□□□□ -0.65
VRK1-207ENST00000557352 PLA2G2CQ5R387 149 aa10.96□□□□□ -0.65
VRK1-207ENST00000557352 SLC27A5Q9Y2P5 690 aa10.96□□□□□ -0.65
VRK1-207ENST00000557352 ZNF598Q86UK7 904 aaKnown RBP10.94□□□□□ -0.66
VRK1-207ENST00000557352 FAM217BQ9NTX9 383 aaPredicted RBP10.94□□□□□ -0.66
VRK1-207ENST00000557352 GRIPAP1Q4V328 841 aa10.93□□□□□ -0.66
VRK1-207ENST00000557352 FAM160A2Q8N612 972 aaPredicted RBP10.93□□□□□ -0.66
VRK1-207ENST00000557352 REPIN1Q9BWE0 567 aaKnown RBP10.93□□□□□ -0.66
VRK1-207ENST00000557352 KDM4AO75164 1064 aa10.92□□□□□ -0.66
VRK1-207ENST00000557352 FMNL1O95466 1100 aaPredicted RBP10.91□□□□□ -0.66
VRK1-207ENST00000557352 BRICD5Q6PL45 260 aa10.91□□□□□ -0.66
VRK1-207ENST00000557352 SALL2Q9Y467 1007 aaPredicted RBP10.91□□□□□ -0.66
VRK1-207ENST00000557352 ZNF697Q5TEC3 545 aa10.9□□□□□ -0.66
VRK1-207ENST00000557352 PRR20EP86478 221 aa10.89□□□□□ -0.67
VRK1-207ENST00000557352 PRR20CP86479 221 aa10.89□□□□□ -0.67
VRK1-207ENST00000557352 PRR20DP86480 221 aa10.89□□□□□ -0.67
VRK1-207ENST00000557352 PRR20BP86481 221 aa10.89□□□□□ -0.67
VRK1-207ENST00000557352 PRR20AP86496 221 aa10.89□□□□□ -0.67
VRK1-207ENST00000557352 RNF19BQ6ZMZ0 732 aa10.89□□□□□ -0.67
VRK1-207ENST00000557352 USP46P62068 366 aa10.88□□□□□ -0.67
VRK1-207ENST00000557352 AMHR2Q16671 573 aa10.88□□□□□ -0.67
VRK1-207ENST00000557352 GDF9O60383 454 aa10.87□□□□□ -0.67
VRK1-207ENST00000557352 PRDM9Q9NQV7 894 aa10.87□□□□□ -0.67
VRK1-207ENST00000557352 SSTR3P32745 418 aaPredicted RBP10.86□□□□□ -0.67
VRK1-207ENST00000557352 TTLL12Q14166 644 aaPredicted RBP10.86□□□□□ -0.67
VRK1-207ENST00000557352 HLA-CQ95604 372 aa10.86□□□□□ -0.67
VRK1-207ENST00000557352 FCF1Q9Y324 198 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms