RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ADGRG1Q9Y653 693 aa8.96□□□□□ -0.98
SRP54-212ENST00000556992 PPEF1O14829 653 aaPredicted RBP8.95□□□□□ -0.98
SRP54-212ENST00000556992 DNAJB2P25686 324 aa8.95□□□□□ -0.98
SRP54-212ENST00000556992 EMID1Q96A84 441 aaPredicted RBP8.95□□□□□ -0.98
SRP54-212ENST00000556992 RCCD1A6NED2 376 aa8.94□□□□□ -0.98
SRP54-212ENST00000556992 SEMA3EO15041 775 aa8.94□□□□□ -0.98
SRP54-212ENST00000556992 GGCXP38435 758 aa8.94□□□□□ -0.98
SRP54-212ENST00000556992 SLC4A3P48751 1232 aa8.94□□□□□ -0.98
SRP54-212ENST00000556992 NECTIN2Q92692 538 aa8.94□□□□□ -0.98
SRP54-212ENST00000556992 RNF223E7ERA6 249 aa8.93□□□□□ -0.98
SRP54-212ENST00000556992 RBM46Q8TBY0 533 aaKnown RBP8.93□□□□□ -0.98
SRP54-212ENST00000556992 TMEM134Q9H6X4 195 aa8.93□□□□□ -0.98
SRP54-212ENST00000556992 CFHP08603 1231 aa8.92□□□□□ -0.98
SRP54-212ENST00000556992 S1PR4O95977 384 aa8.91□□□□□ -0.98
SRP54-212ENST00000556992 SLC10A3P09131 477 aa8.91□□□□□ -0.98
SRP54-212ENST00000556992 TRIM67Q6ZTA4 783 aa8.91□□□□□ -0.98
SRP54-212ENST00000556992 PRR14Q9BWN1 585 aa8.89□□□□□ -0.99
SRP54-212ENST00000556992 ACTN4O43707 911 aaKnown RBP8.88□□□□□ -0.99
SRP54-212ENST00000556992 SLC19A1P41440 591 aa8.88□□□□□ -0.99
SRP54-212ENST00000556992 TMUB1Q9BVT8 246 aa8.88□□□□□ -0.99
SRP54-212ENST00000556992 PUS10Q3MIT2 529 aaKnown RBP8.87□□□□□ -0.99
SRP54-212ENST00000556992 KMT5BQ4FZB7 885 aa8.87□□□□□ -0.99
SRP54-212ENST00000556992 FCHSD2O94868 740 aa8.86□□□□□ -0.99
SRP54-212ENST00000556992 RBM26Q5T8P6 1007 aaKnown RBP8.86□□□□□ -0.99
SRP54-212ENST00000556992 LIAT1Q6ZQX7 453 aa8.86□□□□□ -0.99
SRP54-212ENST00000556992 NLRP7Q8WX94 980 aa8.86□□□□□ -0.99
SRP54-212ENST00000556992 FECHP22830 423 aa8.85□□□□□ -0.99
SRP54-212ENST00000556992 ZNF787Q6DD87 383 aa8.85□□□□□ -0.99
SRP54-212ENST00000556992 TNFRSF10AO00220 468 aa8.84□□□□□ -0.99
SRP54-212ENST00000556992 PLA2G2CQ5R387 149 aa8.84□□□□□ -0.99
SRP54-212ENST00000556992 SPRYD7Q5W111 196 aa8.84□□□□□ -0.99
SRP54-212ENST00000556992 PXYLP1Q8TE99 480 aa8.84□□□□□ -0.99
SRP54-212ENST00000556992 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.82□□□□□ -1
SRP54-212ENST00000556992 ADH1BP00325 375 aa8.82□□□□□ -1
SRP54-212ENST00000556992 ANKLE1Q8NAG6 615 aa8.82□□□□□ -1
SRP54-212ENST00000556992 ZNF697Q5TEC3 545 aa8.81□□□□□ -1
SRP54-212ENST00000556992 METTL3Q86U44 580 aaKnown RBP8.81□□□□□ -1
SRP54-212ENST00000556992 P3H3Q8IVL6 736 aa8.81□□□□□ -1
SRP54-212ENST00000556992 ZNF598Q86UK7 904 aaKnown RBP8.8□□□□□ -1
SRP54-212ENST00000556992 SCUBE3Q8IX30 993 aa8.8□□□□□ -1
SRP54-212ENST00000556992 PKDCCQ504Y2 493 aa8.79□□□□□ -1
SRP54-212ENST00000556992 SLC6A16Q9GZN6 736 aa8.79□□□□□ -1
SRP54-212ENST00000556992 POTECB2RU33 542 aa8.78□□□□□ -1
SRP54-212ENST00000556992 NR1I2O75469 434 aa8.78□□□□□ -1
SRP54-212ENST00000556992 MYT1Q01538 1121 aa8.78□□□□□ -1
SRP54-212ENST00000556992 ZNF775Q96BV0 537 aaPredicted RBP8.78□□□□□ -1
SRP54-212ENST00000556992 FAM187AA6NFU0 413 aa8.77□□□□□ -1.01
SRP54-212ENST00000556992 OATP04181 439 aa8.77□□□□□ -1.01
SRP54-212ENST00000556992 HIC1Q14526 733 aa8.77□□□□□ -1.01
SRP54-212ENST00000556992 TESPA1A2RU30 521 aaPredicted RBP8.76□□□□□ -1.01
SRP54-212ENST00000556992 GPR37O15354 613 aa8.76□□□□□ -1.01
SRP54-212ENST00000556992 GDF9O60383 454 aa8.76□□□□□ -1.01
SRP54-212ENST00000556992 RDH13Q8NBN7 331 aa8.76□□□□□ -1.01
SRP54-212ENST00000556992 SPSB2Q99619 263 aa8.76□□□□□ -1.01
SRP54-212ENST00000556992 DDX11L8A8MPP1 907 aa8.75□□□□□ -1.01
SRP54-212ENST00000556992 GNPATO15228 680 aa8.74□□□□□ -1.01
SRP54-212ENST00000556992 ST8SIA5O15466 376 aa8.74□□□□□ -1.01
SRP54-212ENST00000556992 FUT2Q10981 343 aa8.74□□□□□ -1.01
SRP54-212ENST00000556992 FOXC1Q12948 553 aa8.74□□□□□ -1.01
SRP54-212ENST00000556992 PHOX2BQ99453 314 aa8.74□□□□□ -1.01
SRP54-212ENST00000556992 PRR20EP86478 221 aa8.73□□□□□ -1.01
SRP54-212ENST00000556992 PRR20CP86479 221 aa8.73□□□□□ -1.01
SRP54-212ENST00000556992 PRR20DP86480 221 aa8.73□□□□□ -1.01
SRP54-212ENST00000556992 PRR20BP86481 221 aa8.73□□□□□ -1.01
SRP54-212ENST00000556992 PRR20AP86496 221 aa8.73□□□□□ -1.01
SRP54-212ENST00000556992 PRDM9Q9NQV7 894 aa8.73□□□□□ -1.01
SRP54-212ENST00000556992 DGAT1O75907 488 aa8.71□□□□□ -1.02
SRP54-212ENST00000556992 MORN1Q5T089 497 aa8.71□□□□□ -1.02
SRP54-212ENST00000556992 PKD2L1Q9P0L9 805 aa8.71□□□□□ -1.02
SRP54-212ENST00000556992 FCF1Q9Y324 198 aaKnown RBP8.71□□□□□ -1.02
SRP54-212ENST00000556992 DAXXQ9UER7 740 aaPredicted RBP8.7□□□□□ -1.02
SRP54-212ENST00000556992 SLC27A5Q9Y2P5 690 aa8.7□□□□□ -1.02
SRP54-212ENST00000556992 RSPH4AQ5TD94 716 aa8.69□□□□□ -1.02
SRP54-212ENST00000556992 FAM160A2Q8N612 972 aaPredicted RBP8.69□□□□□ -1.02
SRP54-212ENST00000556992 THAP11Q96EK4 314 aa8.69□□□□□ -1.02
SRP54-212ENST00000556992 PLCB2Q00722 1185 aa8.67□□□□□ -1.02
SRP54-212ENST00000556992 RNF19BQ6ZMZ0 732 aa8.67□□□□□ -1.02
SRP54-212ENST00000556992 AAASQ9NRG9 546 aa8.67□□□□□ -1.02
SRP54-212ENST00000556992 DACH1Q9UI36 760 aa8.67□□□□□ -1.02
SRP54-212ENST00000556992 ATP6V1AP38606 617 aa8.66□□□□□ -1.02
SRP54-212ENST00000556992 GCGRP47871 477 aa8.66□□□□□ -1.02
SRP54-212ENST00000556992 SMYD5Q6GMV2 418 aa8.66□□□□□ -1.02
SRP54-212ENST00000556992 FMNL1O95466 1100 aaPredicted RBP8.64□□□□□ -1.03
SRP54-212ENST00000556992 GPIHBP1Q8IV16 184 aa8.64□□□□□ -1.03
SRP54-212ENST00000556992 HAP1P54257 671 aaPredicted RBP8.61□□□□□ -1.03
SRP54-212ENST00000556992 BRICD5Q6PL45 260 aa8.61□□□□□ -1.03
SRP54-212ENST00000556992 HLA-CQ95604 372 aa8.61□□□□□ -1.03
SRP54-212ENST00000556992 RPIAP49247 311 aa8.6□□□□□ -1.03
SRP54-212ENST00000556992 SULF1Q8IWU6 871 aa8.6□□□□□ -1.03
SRP54-212ENST00000556992 TOR4AQ9NXH8 423 aa8.6□□□□□ -1.03
SRP54-212ENST00000556992 CYP4X1Q8N118 509 aa8.59□□□□□ -1.03
SRP54-212ENST00000556992 KDM2AQ9Y2K7 1162 aa8.59□□□□□ -1.03
SRP54-212ENST00000556992 CD2BP2O95400 341 aaKnown RBP8.58□□□□□ -1.04
SRP54-212ENST00000556992 GMPR2Q9P2T1 348 aaKnown RBP8.58□□□□□ -1.04
SRP54-212ENST00000556992 MSS51Q4VC12 460 aa8.56□□□□□ -1.04
SRP54-212ENST00000556992 TTC24A2A3L6 582 aaPredicted RBP8.55□□□□□ -1.04
SRP54-212ENST00000556992 AXIN1O15169 862 aa8.55□□□□□ -1.04
SRP54-212ENST00000556992 ZBTB24O43167 697 aaPredicted RBP8.55□□□□□ -1.04
SRP54-212ENST00000556992 CD46P15529 392 aa8.55□□□□□ -1.04
SRP54-212ENST00000556992 MDM2Q00987 491 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms