RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	SLC26A8	Q96RN1	970 aa		13.75	□□□□□ -0.21
SYNE2-222	ENST00000556725	RRP7BP	Q9NSQ0	103 aa		13.75	□□□□□ -0.21
SYNE2-222	ENST00000556725	PIK3C2B	O00750	1634 aa		13.75	□□□□□ -0.21
SYNE2-222	ENST00000556725	DUOX2	Q9NRD8	1548 aa		13.74	□□□□□ -0.21
SYNE2-222	ENST00000556725	ARHGAP31	Q2M1Z3	1444 aa		13.74	□□□□□ -0.21
SYNE2-222	ENST00000556725	KCNA6	P17658	529 aa		13.74	□□□□□ -0.21
SYNE2-222	ENST00000556725	IDI1	Q13907	227 aa		13.74	□□□□□ -0.21
SYNE2-222	ENST00000556725	STAG3	Q9UJ98	1225 aa		13.74	□□□□□ -0.21
SYNE2-222	ENST00000556725	ROBO1	Q9Y6N7	1651 aa		13.73	□□□□□ -0.21
SYNE2-222	ENST00000556725	REM2	Q8IYK8	340 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE2-222	ENST00000556725	MYOM3	Q5VTT5	1437 aa		13.72	□□□□□ -0.21
SYNE2-222	ENST00000556725	KIF15	Q9NS87	1388 aa		13.71	□□□□□ -0.21
SYNE2-222	ENST00000556725	MAP3K1	Q13233	1512 aa		13.71	□□□□□ -0.21
SYNE2-222	ENST00000556725	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.71	□□□□□ -0.21
SYNE2-222	ENST00000556725	TET3	O43151	1660 aa		13.71	□□□□□ -0.21
SYNE2-222	ENST00000556725	PRDM15	P57071	1507 aa	Predicted RBP	13.7	□□□□□ -0.22
SYNE2-222	ENST00000556725	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.69	□□□□□ -0.22
SYNE2-222	ENST00000556725	ABCC5	O15440	1437 aa		13.69	□□□□□ -0.22
SYNE2-222	ENST00000556725	SETD1A	O15047	1707 aa	Known RBP	13.69	□□□□□ -0.22
SYNE2-222	ENST00000556725	EFCAB6	Q5THR3	1501 aa		13.69	□□□□□ -0.22
SYNE2-222	ENST00000556725	VPS8	Q8N3P4	1428 aa		13.68	□□□□□ -0.22
SYNE2-222	ENST00000556725	LOC105371045	A0A1W2PR82	267 aa		13.68	□□□□□ -0.22
SYNE2-222	ENST00000556725	SLAIN2	Q9P270	581 aa		13.68	□□□□□ -0.22
SYNE2-222	ENST00000556725	ERBIN	Q96RT1	1412 aa		13.67	□□□□□ -0.22
SYNE2-222	ENST00000556725	BCAN	Q96GW7	911 aa		13.66	□□□□□ -0.22
SYNE2-222	ENST00000556725	CHIC2	Q9UKJ5	165 aa		13.66	□□□□□ -0.22
SYNE2-222	ENST00000556725	PHLPP1	O60346	1717 aa		13.65	□□□□□ -0.22
SYNE2-222	ENST00000556725	KANK1	Q14678	1352 aa		13.65	□□□□□ -0.22
SYNE2-222	ENST00000556725	KDM5A	P29375	1690 aa	Known RBP	13.65	□□□□□ -0.22
SYNE2-222	ENST00000556725	CROCC2	H7BZ55	1655 aa		13.64	□□□□□ -0.23
SYNE2-222	ENST00000556725	MSH6	P52701	1360 aa		13.64	□□□□□ -0.23
SYNE2-222	ENST00000556725	JCAD	Q9P266	1359 aa		13.63	□□□□□ -0.23
SYNE2-222	ENST00000556725	NOS1	P29475	1434 aa		13.63	□□□□□ -0.23
SYNE2-222	ENST00000556725	NWD1	Q149M9	1564 aa		13.62	□□□□□ -0.23
SYNE2-222	ENST00000556725	NKTR	P30414	1462 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-222	ENST00000556725	PTPN23	Q9H3S7	1636 aa		13.62	□□□□□ -0.23
SYNE2-222	ENST00000556725	LMTK2	Q8IWU2	1503 aa		13.62	□□□□□ -0.23
SYNE2-222	ENST00000556725	DAPK1	P53355	1430 aa		13.62	□□□□□ -0.23
SYNE2-222	ENST00000556725	HAX1	O00165	279 aa		13.61	□□□□□ -0.23
SYNE2-222	ENST00000556725	FXR2	P51116	673 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SYNE2-222	ENST00000556725	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SYNE2-222	ENST00000556725	SLC52A1	Q9NWF4	448 aa		13.61	□□□□□ -0.23
SYNE2-222	ENST00000556725	ADGRB3	O60242	1522 aa		13.6	□□□□□ -0.23
SYNE2-222	ENST00000556725	CHD2	O14647	1828 aa	Known RBP	13.6	□□□□□ -0.23
SYNE2-222	ENST00000556725	TRIM52	Q96A61	297 aa		13.6	□□□□□ -0.23
SYNE2-222	ENST00000556725	LRP6	O75581	1613 aa		13.6	□□□□□ -0.23
SYNE2-222	ENST00000556725	COL16A1	Q07092	1604 aa	Predicted RBP	13.6	□□□□□ -0.23
SYNE2-222	ENST00000556725	MYO5B	Q9ULV0	1848 aa		13.6	□□□□□ -0.23
SYNE2-222	ENST00000556725	ANKRD30A	Q9BXX3	1397 aa		13.58	□□□□□ -0.24
SYNE2-222	ENST00000556725	ZFYVE9	O95405	1425 aa		13.57	□□□□□ -0.24
SYNE2-222	ENST00000556725	PITPNM1	O00562	1244 aa		13.57	□□□□□ -0.24
SYNE2-222	ENST00000556725	MEX3C	Q5U5Q3	659 aa	Known RBP	13.57	□□□□□ -0.24
SYNE2-222	ENST00000556725	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.57	□□□□□ -0.24
SYNE2-222	ENST00000556725	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.57	□□□□□ -0.24
SYNE2-222	ENST00000556725	PLEKHG1	Q9ULL1	1385 aa		13.57	□□□□□ -0.24
SYNE2-222	ENST00000556725	RIMS2	Q9UQ26	1411 aa		13.56	□□□□□ -0.24
SYNE2-222	ENST00000556725	PPP1R15A	O75807	674 aa	Predicted RBP	13.56	□□□□□ -0.24
SYNE2-222	ENST00000556725	C14orf37	Q86TY3	774 aa		13.56	□□□□□ -0.24
SYNE2-222	ENST00000556725	TBX22	Q9Y458	520 aa		13.56	□□□□□ -0.24
SYNE2-222	ENST00000556725	SPATA31A6	Q5VVP1	1343 aa		13.56	□□□□□ -0.24
SYNE2-222	ENST00000556725	FGD6	Q6ZV73	1430 aa		13.56	□□□□□ -0.24
SYNE2-222	ENST00000556725	ZNF772	Q68DY9	489 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE2-222	ENST00000556725	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.54	□□□□□ -0.24
SYNE2-222	ENST00000556725	CHGA	P10645	457 aa	Known RBP	13.54	□□□□□ -0.24
SYNE2-222	ENST00000556725	GCC2	Q8IWJ2	1684 aa		13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	NUTM2E	B1AL46	878 aa	Predicted RBP	13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	HDGF	P51858	240 aa	Known RBP	13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	C19orf44	Q9H6X5	657 aa		13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	TMEM131L	A2VDJ0	1609 aa		13.53	□□□□□ -0.24
SYNE2-222	ENST00000556725	ATF3	P18847	181 aa		13.52	□□□□□ -0.25
SYNE2-222	ENST00000556725	RXRB	P28702	533 aa		13.52	□□□□□ -0.25
SYNE2-222	ENST00000556725	CADPS2	Q86UW7	1296 aa		13.52	□□□□□ -0.25
SYNE2-222	ENST00000556725	ADAMTS13	Q76LX8	1427 aa		13.52	□□□□□ -0.25
SYNE2-222	ENST00000556725	NCOA3	Q9Y6Q9	1424 aa		13.52	□□□□□ -0.25
SYNE2-222	ENST00000556725	BRINP3	Q76B58	766 aa		13.51	□□□□□ -0.25
SYNE2-222	ENST00000556725	SHPRH	Q149N8	1683 aa		13.5	□□□□□ -0.25
SYNE2-222	ENST00000556725	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.5	□□□□□ -0.25
SYNE2-222	ENST00000556725	RPRD2	Q5VT52	1461 aa	Known RBP	13.5	□□□□□ -0.25
SYNE2-222	ENST00000556725	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
SYNE2-222	ENST00000556725	ADGRL2	O95490	1459 aa		13.49	□□□□□ -0.25
SYNE2-222	ENST00000556725	AMOTL2	Q9Y2J4	779 aa		13.49	□□□□□ -0.25
SYNE2-222	ENST00000556725	PTPRU	Q92729	1446 aa		13.48	□□□□□ -0.25
SYNE2-222	ENST00000556725	ANKRD50	Q9ULJ7	1429 aa		13.48	□□□□□ -0.25
SYNE2-222	ENST00000556725	AFF2	P51816	1311 aa		13.48	□□□□□ -0.25
SYNE2-222	ENST00000556725	FAM50A	Q14320	339 aa	Known RBP	13.48	□□□□□ -0.25
SYNE2-222	ENST00000556725	DIP2A	Q14689	1571 aa		13.48	□□□□□ -0.25
SYNE2-222	ENST00000556725	DDX17	Q92841	729 aa	Known RBP	13.46	□□□□□ -0.25
SYNE2-222	ENST00000556725	SRCAP	Q6ZRS2	3230 aa		13.45	□□□□□ -0.26
SYNE2-222	ENST00000556725	PIK3R4	Q99570	1358 aa		13.45	□□□□□ -0.26
SYNE2-222	ENST00000556725		E9PCH4	1651 aa		13.44	□□□□□ -0.26
SYNE2-222	ENST00000556725	QTRT2	Q9H974	415 aa	Known RBP	13.44	□□□□□ -0.26
SYNE2-222	ENST00000556725	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.43	□□□□□ -0.26
SYNE2-222	ENST00000556725	EVX2	Q03828	476 aa		13.43	□□□□□ -0.26
SYNE2-222	ENST00000556725	C8orf37	Q96NL8	207 aa		13.43	□□□□□ -0.26
SYNE2-222	ENST00000556725	SETD5	Q9C0A6	1442 aa		13.42	□□□□□ -0.26
SYNE2-222	ENST00000556725	TRPM2	O94759	1503 aa		13.42	□□□□□ -0.26
SYNE2-222	ENST00000556725	ASXL1	Q8IXJ9	1541 aa		13.42	□□□□□ -0.26
SYNE2-222	ENST00000556725	MST1R	Q04912	1400 aa		13.41	□□□□□ -0.26

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