RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 VPS8Q8N3P4 1428 aa15.91■□□□□ 0.14
SCFD1-220ENST00000556486 PIK3C2BO00750 1634 aa15.9■□□□□ 0.14
SCFD1-220ENST00000556486 EIF2AK4Q9P2K8 1649 aaKnown RBP15.9■□□□□ 0.14
SCFD1-220ENST00000556486 MAP3K1Q13233 1512 aa15.89■□□□□ 0.13
SCFD1-220ENST00000556486 ARHGAP23Q9P227 1491 aa15.89■□□□□ 0.13
SCFD1-220ENST00000556486 SLIT1O75093 1534 aa15.89■□□□□ 0.13
SCFD1-220ENST00000556486 TMEM94Q12767 1356 aa15.88■□□□□ 0.13
SCFD1-220ENST00000556486 LRRC9Q6ZRR7 1453 aa15.88■□□□□ 0.13
SCFD1-220ENST00000556486 MAST1Q9Y2H9 1570 aa15.87■□□□□ 0.13
SCFD1-220ENST00000556486 FAM135BQ49AJ0 1406 aa15.86■□□□□ 0.13
SCFD1-220ENST00000556486 SLC26A8Q96RN1 970 aa15.86■□□□□ 0.13
SCFD1-220ENST00000556486 EID1Q9Y6B2 187 aa15.86■□□□□ 0.13
SCFD1-220ENST00000556486 PHLPP1O60346 1717 aa15.85■□□□□ 0.13
SCFD1-220ENST00000556486 VASPP50552 380 aaPredicted RBP15.84■□□□□ 0.13
SCFD1-220ENST00000556486 PROSER2Q86WR7 435 aaPredicted RBP15.84■□□□□ 0.13
SCFD1-220ENST00000556486 STAG3Q9UJ98 1225 aa15.84■□□□□ 0.13
SCFD1-220ENST00000556486 PROM2Q8N271 834 aa15.83■□□□□ 0.12
SCFD1-220ENST00000556486 TMEM2Q9UHN6 1383 aa15.82■□□□□ 0.12
SCFD1-220ENST00000556486 PRDM15P57071 1507 aaPredicted RBP15.81■□□□□ 0.12
SCFD1-220ENST00000556486 DUOX2Q9NRD8 1548 aa15.81■□□□□ 0.12
SCFD1-220ENST00000556486 EFCAB6Q5THR3 1501 aa15.79■□□□□ 0.12
SCFD1-220ENST00000556486 MYOM3Q5VTT5 1437 aa15.79■□□□□ 0.12
SCFD1-220ENST00000556486 KCNA6P17658 529 aa15.79■□□□□ 0.12
SCFD1-220ENST00000556486 BCANQ96GW7 911 aa15.79■□□□□ 0.12
SCFD1-220ENST00000556486 RRP7BPQ9NSQ0 103 aa15.79■□□□□ 0.12
SCFD1-220ENST00000556486 KIF15Q9NS87 1388 aa15.78■□□□□ 0.12
SCFD1-220ENST00000556486 KANK4Q5T7N3 995 aaPredicted RBP15.78■□□□□ 0.12
SCFD1-220ENST00000556486 TRIM52Q96A61 297 aa15.78■□□□□ 0.12
SCFD1-220ENST00000556486 CROCC2H7BZ55 1655 aa15.78■□□□□ 0.12
SCFD1-220ENST00000556486 TET3O43151 1660 aa15.77■□□□□ 0.12
SCFD1-220ENST00000556486 LOC105371045A0A1W2PR82 267 aa15.77■□□□□ 0.12
SCFD1-220ENST00000556486 HAP1P54257 671 aaPredicted RBP15.77■□□□□ 0.12
SCFD1-220ENST00000556486 ARHGAP31Q2M1Z3 1444 aa15.77■□□□□ 0.11
SCFD1-220ENST00000556486 LRP6O75581 1613 aa15.76■□□□□ 0.11
SCFD1-220ENST00000556486 IDI1Q13907 227 aa15.76■□□□□ 0.11
SCFD1-220ENST00000556486 NWD1Q149M9 1564 aa15.75■□□□□ 0.11
SCFD1-220ENST00000556486 AKT1S1Q96B36 256 aa15.75■□□□□ 0.11
SCFD1-220ENST00000556486 COL16A1Q07092 1604 aaPredicted RBP15.75■□□□□ 0.11
SCFD1-220ENST00000556486 MSH6P52701 1360 aa15.75■□□□□ 0.11
SCFD1-220ENST00000556486 JCADQ9P266 1359 aa15.75■□□□□ 0.11
SCFD1-220ENST00000556486 MYO5BQ9ULV0 1848 aa15.74■□□□□ 0.11
SCFD1-220ENST00000556486 SLAIN2Q9P270 581 aa15.74■□□□□ 0.11
SCFD1-220ENST00000556486 NKTRP30414 1462 aaKnown RBP15.73■□□□□ 0.11
SCFD1-220ENST00000556486 MEX3CQ5U5Q3 659 aaKnown RBP15.73■□□□□ 0.11
SCFD1-220ENST00000556486 UPF1Q92900 1129 aaKnown RBP eCLIP15.73■□□□□ 0.11
SCFD1-220ENST00000556486 ADGRB3O60242 1522 aa15.73■□□□□ 0.11
SCFD1-220ENST00000556486 ERBINQ96RT1 1412 aa15.72■□□□□ 0.11
SCFD1-220ENST00000556486 KDM5AP29375 1690 aaKnown RBP15.72■□□□□ 0.11
SCFD1-220ENST00000556486 SPDYE2BA6NHP3 402 aa15.71■□□□□ 0.11
SCFD1-220ENST00000556486 SPDYE6P0CI01 402 aa15.71■□□□□ 0.11
SCFD1-220ENST00000556486 SPDYE2Q495Y8 402 aa15.71■□□□□ 0.11
SCFD1-220ENST00000556486 IFNLR1Q8IU57 520 aaPredicted RBP15.71■□□□□ 0.11
SCFD1-220ENST00000556486 CHIC2Q9UKJ5 165 aa15.71■□□□□ 0.11
SCFD1-220ENST00000556486 KANK1Q14678 1352 aa15.71■□□□□ 0.11
SCFD1-220ENST00000556486 ABCC5O15440 1437 aa15.7■□□□□ 0.1
SCFD1-220ENST00000556486 PTPN23Q9H3S7 1636 aa15.69■□□□□ 0.1
SCFD1-220ENST00000556486 CHD2O14647 1828 aaKnown RBP15.69■□□□□ 0.1
SCFD1-220ENST00000556486 C14orf37Q86TY3 774 aa15.69■□□□□ 0.1
SCFD1-220ENST00000556486 GCC2Q8IWJ2 1684 aa15.68■□□□□ 0.1
SCFD1-220ENST00000556486 NUTM2BA6NNL0 878 aaPredicted RBP15.67■□□□□ 0.1
SCFD1-220ENST00000556486 NUTM2EB1AL46 878 aaPredicted RBP15.67■□□□□ 0.1
SCFD1-220ENST00000556486 NUTM2AQ8IVF1 878 aaPredicted RBP15.67■□□□□ 0.1
SCFD1-220ENST00000556486 DAPK1P53355 1430 aa15.67■□□□□ 0.1
SCFD1-220ENST00000556486 NUTM2DQ5VT03 806 aaPredicted RBP15.66■□□□□ 0.1
SCFD1-220ENST00000556486 PPP1R15AO75807 674 aaPredicted RBP15.65■□□□□ 0.1
SCFD1-220ENST00000556486 NOS1P29475 1434 aa15.65■□□□□ 0.1
SCFD1-220ENST00000556486 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.65■□□□□ 0.1
SCFD1-220ENST00000556486 LMTK2Q8IWU2 1503 aa15.64■□□□□ 0.09
SCFD1-220ENST00000556486 SHPRHQ149N8 1683 aa15.64■□□□□ 0.09
SCFD1-220ENST00000556486 ZNF772Q68DY9 489 aaPredicted RBP15.64■□□□□ 0.09
SCFD1-220ENST00000556486 FGD6Q6ZV73 1430 aa15.64■□□□□ 0.09
SCFD1-220ENST00000556486 SPATA31A6Q5VVP1 1343 aa15.63■□□□□ 0.09
SCFD1-220ENST00000556486 ZFYVE9O95405 1425 aa15.62■□□□□ 0.09
SCFD1-220ENST00000556486 RIMS2Q9UQ26 1411 aa15.62■□□□□ 0.09
SCFD1-220ENST00000556486 SRCAPQ6ZRS2 3230 aa15.62■□□□□ 0.09
SCFD1-220ENST00000556486 RXRBP28702 533 aa15.62■□□□□ 0.09
SCFD1-220ENST00000556486 PLEKHG1Q9ULL1 1385 aa15.62■□□□□ 0.09
SCFD1-220ENST00000556486 AHDC1Q5TGY3 1603 aaPredicted RBP15.61■□□□□ 0.09
SCFD1-220ENST00000556486 CHGAP10645 457 aaKnown RBP15.61■□□□□ 0.09
SCFD1-220ENST00000556486 REM2Q8IYK8 340 aaPredicted RBP15.61■□□□□ 0.09
SCFD1-220ENST00000556486 TMEM131LA2VDJ0 1609 aa15.6■□□□□ 0.09
SCFD1-220ENST00000556486 AFF2P51816 1311 aa15.59■□□□□ 0.09
SCFD1-220ENST00000556486 ANKRD30AQ9BXX3 1397 aa15.59■□□□□ 0.09
SCFD1-220ENST00000556486 DIP2AQ14689 1571 aa15.58■□□□□ 0.09
SCFD1-220ENST00000556486 ATF3P18847 181 aa15.58■□□□□ 0.08
SCFD1-220ENST00000556486 ZNF692Q9BU19 519 aaPredicted RBP15.58■□□□□ 0.08
SCFD1-220ENST00000556486 SLC52A1Q9NWF4 448 aa15.58■□□□□ 0.08
SCFD1-220ENST00000556486 SSUH2Q9Y2M2 353 aa15.57■□□□□ 0.08
SCFD1-220ENST00000556486 ADGRL2O95490 1459 aa15.57■□□□□ 0.08
SCFD1-220ENST00000556486 BRINP3Q76B58 766 aa15.56■□□□□ 0.08
SCFD1-220ENST00000556486 VSIG10Q8N0Z9 540 aa15.56■□□□□ 0.08
SCFD1-220ENST00000556486 RGS12O14924 1447 aa15.55■□□□□ 0.08
SCFD1-220ENST00000556486 ADAMTS13Q76LX8 1427 aa15.55■□□□□ 0.08
SCFD1-220ENST00000556486 CADPS2Q86UW7 1296 aa15.55■□□□□ 0.08
SCFD1-220ENST00000556486 DDX17Q92841 729 aaKnown RBP15.54■□□□□ 0.08
SCFD1-220ENST00000556486 C8orf37Q96NL8 207 aa15.54■□□□□ 0.08
SCFD1-220ENST00000556486 C19orf44Q9H6X5 657 aa15.54■□□□□ 0.08
SCFD1-220ENST00000556486 TBX22Q9Y458 520 aa15.54■□□□□ 0.08
SCFD1-220ENST00000556486 ASXL1Q8IXJ9 1541 aa15.53■□□□□ 0.08
SCFD1-220ENST00000556486 PTPRUQ92729 1446 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms