RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 NUTM2FA1L443 756 aa11.17□□□□□ -0.62
SCFD1-216ENST00000555550 DNAJB2P25686 324 aa11.16□□□□□ -0.62
SCFD1-216ENST00000555550 TMUB1Q9BVT8 246 aa11.15□□□□□ -0.62
SCFD1-216ENST00000555550 ADGRG1Q9Y653 693 aa11.15□□□□□ -0.62
SCFD1-216ENST00000555550 RBM46Q8TBY0 533 aaKnown RBP11.14□□□□□ -0.63
SCFD1-216ENST00000555550 RCCD1A6NED2 376 aa11.13□□□□□ -0.63
SCFD1-216ENST00000555550 RNF223E7ERA6 249 aa11.13□□□□□ -0.63
SCFD1-216ENST00000555550 PRR14Q9BWN1 585 aa11.13□□□□□ -0.63
SCFD1-216ENST00000555550 TMEM134Q9H6X4 195 aa11.13□□□□□ -0.63
SCFD1-216ENST00000555550 TLL1O43897 1013 aa11.12□□□□□ -0.63
SCFD1-216ENST00000555550 PPEF1O14829 653 aaPredicted RBP11.11□□□□□ -0.63
SCFD1-216ENST00000555550 EMID1Q96A84 441 aaPredicted RBP11.1□□□□□ -0.63
SCFD1-216ENST00000555550 SLC19A1P41440 591 aa11.09□□□□□ -0.63
SCFD1-216ENST00000555550 SEMA3EO15041 775 aa11.08□□□□□ -0.64
SCFD1-216ENST00000555550 ACTN4O43707 911 aaKnown RBP11.07□□□□□ -0.64
SCFD1-216ENST00000555550 CFHP08603 1231 aa11.07□□□□□ -0.64
SCFD1-216ENST00000555550 SLC10A3P09131 477 aa11.07□□□□□ -0.64
SCFD1-216ENST00000555550 KMT5BQ4FZB7 885 aa11.07□□□□□ -0.64
SCFD1-216ENST00000555550 TRIM67Q6ZTA4 783 aa11.07□□□□□ -0.64
SCFD1-216ENST00000555550 S1PR4O95977 384 aa11.06□□□□□ -0.64
SCFD1-216ENST00000555550 ZNF787Q6DD87 383 aa11.06□□□□□ -0.64
SCFD1-216ENST00000555550 FCHSD2O94868 740 aa11.05□□□□□ -0.64
SCFD1-216ENST00000555550 SPRYD7Q5W111 196 aa11.03□□□□□ -0.64
SCFD1-216ENST00000555550 LIAT1Q6ZQX7 453 aa11.03□□□□□ -0.64
SCFD1-216ENST00000555550 ANKLE1Q8NAG6 615 aa11.02□□□□□ -0.65
SCFD1-216ENST00000555550 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.01□□□□□ -0.65
SCFD1-216ENST00000555550 ZNF598Q86UK7 904 aaKnown RBP11.01□□□□□ -0.65
SCFD1-216ENST00000555550 PXYLP1Q8TE99 480 aa11.01□□□□□ -0.65
SCFD1-216ENST00000555550 PUS10Q3MIT2 529 aaKnown RBP11□□□□□ -0.65
SCFD1-216ENST00000555550 SCUBE3Q8IX30 993 aa10.99□□□□□ -0.65
SCFD1-216ENST00000555550 NR1I2O75469 434 aa10.98□□□□□ -0.65
SCFD1-216ENST00000555550 ADH1BP00325 375 aa10.98□□□□□ -0.65
SCFD1-216ENST00000555550 OATP04181 439 aa10.98□□□□□ -0.65
SCFD1-216ENST00000555550 RBM26Q5T8P6 1007 aaKnown RBP10.98□□□□□ -0.65
SCFD1-216ENST00000555550 P3H3Q8IVL6 736 aa10.98□□□□□ -0.65
SCFD1-216ENST00000555550 FECHP22830 423 aa10.97□□□□□ -0.65
SCFD1-216ENST00000555550 PKDCCQ504Y2 493 aa10.97□□□□□ -0.65
SCFD1-216ENST00000555550 ZNF697Q5TEC3 545 aa10.97□□□□□ -0.65
SCFD1-216ENST00000555550 SLC6A16Q9GZN6 736 aa10.97□□□□□ -0.65
SCFD1-216ENST00000555550 PLA2G2CQ5R387 149 aa10.96□□□□□ -0.65
SCFD1-216ENST00000555550 TNFRSF10AO00220 468 aa10.95□□□□□ -0.66
SCFD1-216ENST00000555550 MYT1Q01538 1121 aa10.95□□□□□ -0.66
SCFD1-216ENST00000555550 METTL3Q86U44 580 aaKnown RBP10.95□□□□□ -0.66
SCFD1-216ENST00000555550 HIC1Q14526 733 aa10.94□□□□□ -0.66
SCFD1-216ENST00000555550 ZNF775Q96BV0 537 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-216ENST00000555550 NLRP7Q8WX94 980 aa10.93□□□□□ -0.66
SCFD1-216ENST00000555550 POTECB2RU33 542 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 GDF9O60383 454 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 DGAT1O75907 488 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 PRR20EP86478 221 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 PRR20CP86479 221 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 PRR20DP86480 221 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 PRR20BP86481 221 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 PRR20AP86496 221 aa10.92□□□□□ -0.66
SCFD1-216ENST00000555550 RSPH4AQ5TD94 716 aa10.91□□□□□ -0.66
SCFD1-216ENST00000555550 SPSB2Q99619 263 aa10.91□□□□□ -0.66
SCFD1-216ENST00000555550 TESPA1A2RU30 521 aaPredicted RBP10.9□□□□□ -0.66
SCFD1-216ENST00000555550 FAM187AA6NFU0 413 aa10.9□□□□□ -0.66
SCFD1-216ENST00000555550 RDH13Q8NBN7 331 aa10.89□□□□□ -0.67
SCFD1-216ENST00000555550 GNPATO15228 680 aa10.88□□□□□ -0.67
SCFD1-216ENST00000555550 FOXC1Q12948 553 aa10.88□□□□□ -0.67
SCFD1-216ENST00000555550 DAXXQ9UER7 740 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-216ENST00000555550 DDX11L8A8MPP1 907 aa10.87□□□□□ -0.67
SCFD1-216ENST00000555550 FUT2Q10981 343 aa10.87□□□□□ -0.67
SCFD1-216ENST00000555550 MORN1Q5T089 497 aa10.85□□□□□ -0.67
SCFD1-216ENST00000555550 SMYD5Q6GMV2 418 aa10.85□□□□□ -0.67
SCFD1-216ENST00000555550 GPR37O15354 613 aa10.84□□□□□ -0.67
SCFD1-216ENST00000555550 ST8SIA5O15466 376 aa10.84□□□□□ -0.67
SCFD1-216ENST00000555550 PKD2L1Q9P0L9 805 aa10.84□□□□□ -0.67
SCFD1-216ENST00000555550 PHOX2BQ99453 314 aa10.83□□□□□ -0.68
SCFD1-216ENST00000555550 SLC27A5Q9Y2P5 690 aa10.83□□□□□ -0.68
SCFD1-216ENST00000555550 ATP6V1AP38606 617 aa10.82□□□□□ -0.68
SCFD1-216ENST00000555550 FAM160A2Q8N612 972 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-216ENST00000555550 THAP11Q96EK4 314 aa10.82□□□□□ -0.68
SCFD1-216ENST00000555550 FCF1Q9Y324 198 aaKnown RBP10.82□□□□□ -0.68
SCFD1-216ENST00000555550 AAASQ9NRG9 546 aa10.81□□□□□ -0.68
SCFD1-216ENST00000555550 GCGRP47871 477 aa10.8□□□□□ -0.68
SCFD1-216ENST00000555550 FMNL1O95466 1100 aaPredicted RBP10.79□□□□□ -0.68
SCFD1-216ENST00000555550 CD2BP2O95400 341 aaKnown RBP10.78□□□□□ -0.68
SCFD1-216ENST00000555550 PRDM9Q9NQV7 894 aa10.78□□□□□ -0.68
SCFD1-216ENST00000555550 RPIAP49247 311 aa10.77□□□□□ -0.69
SCFD1-216ENST00000555550 DACH1Q9UI36 760 aa10.77□□□□□ -0.69
SCFD1-216ENST00000555550 BRICD5Q6PL45 260 aa10.76□□□□□ -0.69
SCFD1-216ENST00000555550 PLCB2Q00722 1185 aa10.75□□□□□ -0.69
SCFD1-216ENST00000555550 SULF1Q8IWU6 871 aa10.75□□□□□ -0.69
SCFD1-216ENST00000555550 RNF19BQ6ZMZ0 732 aa10.74□□□□□ -0.69
SCFD1-216ENST00000555550 TOR4AQ9NXH8 423 aa10.74□□□□□ -0.69
SCFD1-216ENST00000555550 LMOD2Q6P5Q4 547 aa10.73□□□□□ -0.69
SCFD1-216ENST00000555550 CYP4X1Q8N118 509 aa10.73□□□□□ -0.69
SCFD1-216ENST00000555550 GPIHBP1Q8IV16 184 aa10.72□□□□□ -0.69
SCFD1-216ENST00000555550 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
SCFD1-216ENST00000555550 ZBTB24O43167 697 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-216ENST00000555550 GRIPAP1Q4V328 841 aa10.68□□□□□ -0.7
SCFD1-216ENST00000555550 AXIN1O15169 862 aa10.67□□□□□ -0.7
SCFD1-216ENST00000555550 AVPP01185 164 aa10.67□□□□□ -0.7
SCFD1-216ENST00000555550 TTC24A2A3L6 582 aaPredicted RBP10.66□□□□□ -0.7
SCFD1-216ENST00000555550 MSS51Q4VC12 460 aa10.66□□□□□ -0.7
SCFD1-216ENST00000555550 TREML4Q6UXN2 200 aa10.66□□□□□ -0.7
SCFD1-216ENST00000555550 CRIPAKQ8N1N5 446 aa10.66□□□□□ -0.7
SCFD1-216ENST00000555550 GMPR2Q9P2T1 348 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms