RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CCDC102AQ96A19 550 aa7.98□□□□□ -1.13
VRK1-202ENST00000553683 DAXXQ9UER7 740 aaPredicted RBP7.98□□□□□ -1.13
VRK1-202ENST00000553683 FAM161AQ3B820 660 aa7.97□□□□□ -1.13
VRK1-202ENST00000553683 SWT1Q5T5J6 900 aaKnown RBP7.97□□□□□ -1.13
VRK1-202ENST00000553683 RSPH4AQ5TD94 716 aa7.97□□□□□ -1.13
VRK1-202ENST00000553683 AK7Q96M32 723 aa7.97□□□□□ -1.13
VRK1-202ENST00000553683 PRR14Q9BWN1 585 aa7.96□□□□□ -1.14
VRK1-202ENST00000553683 BCAMP50895 628 aa7.95□□□□□ -1.14
VRK1-202ENST00000553683 PPP4CP60510 307 aa7.95□□□□□ -1.14
VRK1-202ENST00000553683 AMHR2Q16671 573 aa7.95□□□□□ -1.14
VRK1-202ENST00000553683 SULF1Q8IWU6 871 aa7.95□□□□□ -1.14
VRK1-202ENST00000553683 CLCN1P35523 988 aa7.94□□□□□ -1.14
VRK1-202ENST00000553683 PHOX2BQ99453 314 aa7.94□□□□□ -1.14
VRK1-202ENST00000553683 HPS5Q9UPZ3 1129 aa7.94□□□□□ -1.14
VRK1-202ENST00000553683 TMUB1Q9BVT8 246 aa7.93□□□□□ -1.14
VRK1-202ENST00000553683 PTPN5P54829 565 aa7.92□□□□□ -1.14
VRK1-202ENST00000553683 GPCPD1Q9NPB8 672 aa7.92□□□□□ -1.14
VRK1-202ENST00000553683 WBP1LQ9NX94 342 aa7.92□□□□□ -1.14
VRK1-202ENST00000553683 TRIM66O15016 1216 aa7.91□□□□□ -1.14
VRK1-202ENST00000553683 IFFO2Q5TF58 517 aa7.9□□□□□ -1.14
VRK1-202ENST00000553683 KMT5BQ4FZB7 885 aa7.89□□□□□ -1.15
VRK1-202ENST00000553683 SLC10A3P09131 477 aa7.88□□□□□ -1.15
VRK1-202ENST00000553683 MDM2Q00987 491 aaPredicted RBP7.88□□□□□ -1.15
VRK1-202ENST00000553683 SLC24A3Q9HC58 644 aa7.88□□□□□ -1.15
VRK1-202ENST00000553683 ACTN4O43707 911 aaKnown RBP7.87□□□□□ -1.15
VRK1-202ENST00000553683 RNF40O75150 1001 aa7.87□□□□□ -1.15
VRK1-202ENST00000553683 ITGBL1O95965 494 aaPredicted RBP7.87□□□□□ -1.15
VRK1-202ENST00000553683 CD46P15529 392 aa7.86□□□□□ -1.15
VRK1-202ENST00000553683 FAM217BQ9NTX9 383 aaPredicted RBP7.86□□□□□ -1.15
VRK1-202ENST00000553683 DDX11L8A8MPP1 907 aa7.85□□□□□ -1.15
VRK1-202ENST00000553683 GCGRP47871 477 aa7.85□□□□□ -1.15
VRK1-202ENST00000553683 APLP1P51693 650 aa7.85□□□□□ -1.15
VRK1-202ENST00000553683 CFHP08603 1231 aa7.84□□□□□ -1.15
VRK1-202ENST00000553683 PDE4DQ08499 809 aa7.84□□□□□ -1.15
VRK1-202ENST00000553683 TTLL12Q14166 644 aaPredicted RBP7.84□□□□□ -1.15
VRK1-202ENST00000553683 USP46P62068 366 aa7.83□□□□□ -1.16
VRK1-202ENST00000553683 PARP9Q8IXQ6 854 aa7.83□□□□□ -1.16
VRK1-202ENST00000553683 RDH13Q8NBN7 331 aa7.83□□□□□ -1.16
VRK1-202ENST00000553683 NLRP7Q8WX94 980 aa7.83□□□□□ -1.16
VRK1-202ENST00000553683 SSTR3P32745 418 aaPredicted RBP7.82□□□□□ -1.16
VRK1-202ENST00000553683 TPRNQ4KMQ1 711 aa7.82□□□□□ -1.16
VRK1-202ENST00000553683 GRIPAP1Q4V328 841 aa7.82□□□□□ -1.16
VRK1-202ENST00000553683 GIGYF2Q6Y7W6 1299 aaKnown RBP7.82□□□□□ -1.16
VRK1-202ENST00000553683 REPIN1Q9BWE0 567 aaKnown RBP7.82□□□□□ -1.16
VRK1-202ENST00000553683 DIXDC1Q155Q3 683 aa7.81□□□□□ -1.16
VRK1-202ENST00000553683 TJAP1Q5JTD0 557 aa7.81□□□□□ -1.16
VRK1-202ENST00000553683 IL21Q9HBE4 155 aa7.81□□□□□ -1.16
VRK1-202ENST00000553683 PCDHB3Q9Y5E6 796 aa7.81□□□□□ -1.16
VRK1-202ENST00000553683 ATP6V1AP38606 617 aa7.8□□□□□ -1.16
VRK1-202ENST00000553683 KCNC4Q03721 635 aa7.8□□□□□ -1.16
VRK1-202ENST00000553683 PLA2G2EQ9NZK7 142 aa7.8□□□□□ -1.16
VRK1-202ENST00000553683 NR1I2O75469 434 aa7.79□□□□□ -1.16
VRK1-202ENST00000553683 MTRQ99707 1265 aa7.79□□□□□ -1.16
VRK1-202ENST00000553683 KDM4AO75164 1064 aa7.78□□□□□ -1.16
VRK1-202ENST00000553683 SALL2Q9Y467 1007 aaPredicted RBP7.78□□□□□ -1.16
VRK1-202ENST00000553683 GJA5P36382 358 aa7.77□□□□□ -1.17
VRK1-202ENST00000553683 ZPR1O75312 459 aa7.76□□□□□ -1.17
VRK1-202ENST00000553683 FUT2Q10981 343 aa7.76□□□□□ -1.17
VRK1-202ENST00000553683 MORN1Q5T089 497 aa7.76□□□□□ -1.17
VRK1-202ENST00000553683 NUTM1Q86Y26 1132 aa7.75□□□□□ -1.17
VRK1-202ENST00000553683 BEGAINQ9BUH8 593 aa7.75□□□□□ -1.17
VRK1-202ENST00000553683 MS4A1P11836 297 aa7.74□□□□□ -1.17
VRK1-202ENST00000553683 Q3C1V9 767 aa7.74□□□□□ -1.17
VRK1-202ENST00000553683 BLOC1S3Q6QNY0 202 aa7.74□□□□□ -1.17
VRK1-202ENST00000553683 SCUBE3Q8IX30 993 aa7.74□□□□□ -1.17
VRK1-202ENST00000553683 HOXA2O43364 376 aa7.73□□□□□ -1.17
VRK1-202ENST00000553683 DDRGK1Q96HY6 314 aa7.73□□□□□ -1.17
VRK1-202ENST00000553683 RGS20O76081 388 aa7.72□□□□□ -1.17
VRK1-202ENST00000553683 COPS2P61201 443 aa7.72□□□□□ -1.17
VRK1-202ENST00000553683 SPIRE2Q8WWL2 714 aa7.72□□□□□ -1.17
VRK1-202ENST00000553683 RSPH6AQ9H0K4 717 aa7.72□□□□□ -1.17
VRK1-202ENST00000553683 KDM4CQ9H3R0 1056 aa7.72□□□□□ -1.17
VRK1-202ENST00000553683 TUSC1Q2TAM9 212 aa7.71□□□□□ -1.18
VRK1-202ENST00000553683 A0A0G2JS52 829 aa7.7□□□□□ -1.18
VRK1-202ENST00000553683 ZNF516Q92618 1163 aa7.7□□□□□ -1.18
VRK1-202ENST00000553683 THAP11Q96EK4 314 aa7.7□□□□□ -1.18
VRK1-202ENST00000553683 SLC27A5Q9Y2P5 690 aa7.7□□□□□ -1.18
VRK1-202ENST00000553683 FMNL1O95466 1100 aaPredicted RBP7.69□□□□□ -1.18
VRK1-202ENST00000553683 ADH1BP00325 375 aa7.69□□□□□ -1.18
VRK1-202ENST00000553683 GGCXP38435 758 aa7.69□□□□□ -1.18
VRK1-202ENST00000553683 PUS10Q3MIT2 529 aaKnown RBP7.69□□□□□ -1.18
VRK1-202ENST00000553683 BRICD5Q6PL45 260 aa7.69□□□□□ -1.18
VRK1-202ENST00000553683 TBC1D2Q9BYX2 928 aa7.69□□□□□ -1.18
VRK1-202ENST00000553683 NEUROD2Q15784 382 aa7.68□□□□□ -1.18
VRK1-202ENST00000553683 SPDYE5A6NIY4 337 aa7.67□□□□□ -1.18
VRK1-202ENST00000553683 SPTLC1O15269 473 aa7.67□□□□□ -1.18
VRK1-202ENST00000553683 FDX1P10109 184 aa7.67□□□□□ -1.18
VRK1-202ENST00000553683 BRPF1P55201 1214 aaPredicted RBP7.67□□□□□ -1.18
VRK1-202ENST00000553683 MSS51Q4VC12 460 aa7.67□□□□□ -1.18
VRK1-202ENST00000553683 SPSB2Q99619 263 aa7.67□□□□□ -1.18
VRK1-202ENST00000553683 GPBP1L1Q9HC44 474 aaPredicted RBP7.67□□□□□ -1.18
VRK1-202ENST00000553683 GOPCQ9HD26 462 aa7.67□□□□□ -1.18
VRK1-202ENST00000553683 PRPF38BQ5VTL8 546 aaKnown RBP7.66□□□□□ -1.18
VRK1-202ENST00000553683 MOXD2PA6NHM9 499 aa7.65□□□□□ -1.18
VRK1-202ENST00000553683 PRKCSHP14314 528 aaPredicted RBP7.65□□□□□ -1.18
VRK1-202ENST00000553683 RSBN1LQ6PCB5 846 aaPredicted RBP7.65□□□□□ -1.18
VRK1-202ENST00000553683 FAM117AQ9C073 453 aa7.65□□□□□ -1.18
VRK1-202ENST00000553683 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.65□□□□□ -1.18
VRK1-202ENST00000553683 SH3D19Q5HYK7 790 aa7.64□□□□□ -1.19
VRK1-202ENST00000553683 MYSM1Q5VVJ2 828 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms