RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 RNF40O75150 1001 aa11.34□□□□□ -0.59
VPS29-210ENST00000552130 CFAP44Q96MT7 982 aa11.33□□□□□ -0.6
VPS29-210ENST00000552130 KDM2AQ9Y2K7 1162 aa11.32□□□□□ -0.6
VPS29-210ENST00000552130 TMUB1Q9BVT8 246 aa11.31□□□□□ -0.6
VPS29-210ENST00000552130 ZPR1O75312 459 aa11.3□□□□□ -0.6
VPS29-210ENST00000552130 COPS2P61201 443 aa11.29□□□□□ -0.6
VPS29-210ENST00000552130 GGCXP38435 758 aa11.26□□□□□ -0.61
VPS29-210ENST00000552130 MLLT3P42568 568 aaPredicted RBP11.25□□□□□ -0.61
VPS29-210ENST00000552130 ARHGEF1Q92888 912 aaKnown RBP11.25□□□□□ -0.61
VPS29-210ENST00000552130 EMID1Q96A84 441 aaPredicted RBP11.25□□□□□ -0.61
VPS29-210ENST00000552130 PRR14Q9BWN1 585 aa11.25□□□□□ -0.61
VPS29-210ENST00000552130 PDZRN3Q9UPQ7 1066 aa11.25□□□□□ -0.61
VPS29-210ENST00000552130 PTGDRQ13258 359 aa11.24□□□□□ -0.61
VPS29-210ENST00000552130 TMEM132AQ24JP5 1023 aa11.23□□□□□ -0.61
VPS29-210ENST00000552130 TRIM67Q6ZTA4 783 aa11.23□□□□□ -0.61
VPS29-210ENST00000552130 PCDHB3Q9Y5E6 796 aa11.22□□□□□ -0.61
VPS29-210ENST00000552130 RNF223E7ERA6 249 aa11.21□□□□□ -0.61
VPS29-210ENST00000552130 DNAJB2P25686 324 aa11.21□□□□□ -0.61
VPS29-210ENST00000552130 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
VPS29-210ENST00000552130 BLOC1S3Q6QNY0 202 aa11.21□□□□□ -0.61
VPS29-210ENST00000552130 TMEM134Q9H6X4 195 aa11.2□□□□□ -0.62
VPS29-210ENST00000552130 ADGRG1Q9Y653 693 aa11.2□□□□□ -0.62
VPS29-210ENST00000552130 KCNV2Q8TDN2 545 aa11.18□□□□□ -0.62
VPS29-210ENST00000552130 C14orf37Q86TY3 774 aa11.17□□□□□ -0.62
VPS29-210ENST00000552130 ACTN4O43707 911 aaKnown RBP11.16□□□□□ -0.62
VPS29-210ENST00000552130 RBM46Q8TBY0 533 aaKnown RBP11.16□□□□□ -0.62
VPS29-210ENST00000552130 PODXL2Q9NZ53 605 aa11.16□□□□□ -0.62
VPS29-210ENST00000552130 TLL1O43897 1013 aa11.15□□□□□ -0.62
VPS29-210ENST00000552130 SLC19A1P41440 591 aa11.15□□□□□ -0.62
VPS29-210ENST00000552130 ZNF787Q6DD87 383 aa11.15□□□□□ -0.62
VPS29-210ENST00000552130 ANKLE1Q8NAG6 615 aa11.15□□□□□ -0.62
VPS29-210ENST00000552130 RCCD1A6NED2 376 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 PRR20EP86478 221 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 PRR20CP86479 221 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 PRR20DP86480 221 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 PRR20BP86481 221 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 PRR20AP86496 221 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 SPRYD7Q5W111 196 aa11.14□□□□□ -0.63
VPS29-210ENST00000552130 SLC10A3P09131 477 aa11.12□□□□□ -0.63
VPS29-210ENST00000552130 ZNF598Q86UK7 904 aaKnown RBP11.12□□□□□ -0.63
VPS29-210ENST00000552130 TSHZ2Q9NRE2 1034 aa11.12□□□□□ -0.63
VPS29-210ENST00000552130 S1PR4O95977 384 aa11.1□□□□□ -0.63
VPS29-210ENST00000552130 KMT5BQ4FZB7 885 aa11.1□□□□□ -0.63
VPS29-210ENST00000552130 LIAT1Q6ZQX7 453 aa11.1□□□□□ -0.63
VPS29-210ENST00000552130 CFHP08603 1231 aa11.09□□□□□ -0.63
VPS29-210ENST00000552130 FAM161AQ3B820 660 aa11.09□□□□□ -0.63
VPS29-210ENST00000552130 PPEF1O14829 653 aaPredicted RBP11.08□□□□□ -0.64
VPS29-210ENST00000552130 DGAT1O75907 488 aa11.08□□□□□ -0.64
VPS29-210ENST00000552130 MYT1Q01538 1121 aa11.08□□□□□ -0.64
VPS29-210ENST00000552130 ZNF775Q96BV0 537 aaPredicted RBP11.08□□□□□ -0.64
VPS29-210ENST00000552130 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.07□□□□□ -0.64
VPS29-210ENST00000552130 GDF9O60383 454 aa11.07□□□□□ -0.64
VPS29-210ENST00000552130 ADH1BP00325 375 aa11.07□□□□□ -0.64
VPS29-210ENST00000552130 PXYLP1Q8TE99 480 aa11.05□□□□□ -0.64
VPS29-210ENST00000552130 NUTM2FA1L443 756 aa11.04□□□□□ -0.64
VPS29-210ENST00000552130 FCHSD2O94868 740 aa11.04□□□□□ -0.64
VPS29-210ENST00000552130 PLA2G2CQ5R387 149 aa11.04□□□□□ -0.64
VPS29-210ENST00000552130 NR1I2O75469 434 aa11.03□□□□□ -0.64
VPS29-210ENST00000552130 ZNF697Q5TEC3 545 aa11.03□□□□□ -0.64
VPS29-210ENST00000552130 PKDCCQ504Y2 493 aa11.02□□□□□ -0.65
VPS29-210ENST00000552130 SCUBE3Q8IX30 993 aa11.01□□□□□ -0.65
VPS29-210ENST00000552130 OATP04181 439 aa11□□□□□ -0.65
VPS29-210ENST00000552130 SLC6A16Q9GZN6 736 aa11□□□□□ -0.65
VPS29-210ENST00000552130 POTECB2RU33 542 aa10.99□□□□□ -0.65
VPS29-210ENST00000552130 SEMA3EO15041 775 aa10.99□□□□□ -0.65
VPS29-210ENST00000552130 METTL3Q86U44 580 aaKnown RBP10.98□□□□□ -0.65
VPS29-210ENST00000552130 TNFRSF10AO00220 468 aa10.96□□□□□ -0.65
VPS29-210ENST00000552130 HIC1Q14526 733 aa10.96□□□□□ -0.65
VPS29-210ENST00000552130 P3H3Q8IVL6 736 aa10.96□□□□□ -0.65
VPS29-210ENST00000552130 PKD2L1Q9P0L9 805 aa10.96□□□□□ -0.65
VPS29-210ENST00000552130 FAM187AA6NFU0 413 aa10.94□□□□□ -0.66
VPS29-210ENST00000552130 PUS10Q3MIT2 529 aaKnown RBP10.94□□□□□ -0.66
VPS29-210ENST00000552130 LMOD2Q6P5Q4 547 aa10.94□□□□□ -0.66
VPS29-210ENST00000552130 SPSB2Q99619 263 aa10.94□□□□□ -0.66
VPS29-210ENST00000552130 THAP11Q96EK4 314 aa10.93□□□□□ -0.66
VPS29-210ENST00000552130 AAASQ9NRG9 546 aa10.93□□□□□ -0.66
VPS29-210ENST00000552130 GPR37O15354 613 aa10.92□□□□□ -0.66
VPS29-210ENST00000552130 MORN1Q5T089 497 aa10.91□□□□□ -0.66
VPS29-210ENST00000552130 LCE2AQ5TA79 106 aaPredicted RBP10.91□□□□□ -0.66
VPS29-210ENST00000552130 TESPA1A2RU30 521 aaPredicted RBP10.9□□□□□ -0.66
VPS29-210ENST00000552130 RPIAP49247 311 aa10.9□□□□□ -0.66
VPS29-210ENST00000552130 RSPH4AQ5TD94 716 aa10.9□□□□□ -0.66
VPS29-210ENST00000552130 CRIPAKQ8N1N5 446 aa10.9□□□□□ -0.66
VPS29-210ENST00000552130 FECHP22830 423 aa10.89□□□□□ -0.67
VPS29-210ENST00000552130 NPM2Q86SE8 214 aaKnown RBP10.89□□□□□ -0.67
VPS29-210ENST00000552130 ST8SIA5O15466 376 aa10.88□□□□□ -0.67
VPS29-210ENST00000552130 TOR4AQ9NXH8 423 aa10.88□□□□□ -0.67
VPS29-210ENST00000552130 GNPATO15228 680 aa10.87□□□□□ -0.67
VPS29-210ENST00000552130 AVPP01185 164 aa10.87□□□□□ -0.67
VPS29-210ENST00000552130 RBM26Q5T8P6 1007 aaKnown RBP10.87□□□□□ -0.67
VPS29-210ENST00000552130 FAM160A2Q8N612 972 aaPredicted RBP10.87□□□□□ -0.67
VPS29-210ENST00000552130 FUT2Q10981 343 aa10.86□□□□□ -0.67
VPS29-210ENST00000552130 SALL2Q9Y467 1007 aaPredicted RBP10.86□□□□□ -0.67
VPS29-210ENST00000552130 SUPT5HO00267 1087 aaKnown RBP10.84□□□□□ -0.67
VPS29-210ENST00000552130 ATP6V1AP38606 617 aa10.84□□□□□ -0.67
VPS29-210ENST00000552130 GCGRP47871 477 aa10.84□□□□□ -0.67
VPS29-210ENST00000552130 FCF1Q9Y324 198 aaKnown RBP10.84□□□□□ -0.67
VPS29-210ENST00000552130 FOXC1Q12948 553 aa10.83□□□□□ -0.68
VPS29-210ENST00000552130 PHOX2BQ99453 314 aa10.83□□□□□ -0.68
VPS29-210ENST00000552130 SLC27A5Q9Y2P5 690 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms