RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 NUDT18Q6ZVK8 323 aa6.28□□□□□ -1.4
LIMA1-209ENST00000552008 SLF2Q8IX21 1173 aa6.28□□□□□ -1.4
LIMA1-209ENST00000552008 C11orf95C9JLR9 678 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-209ENST00000552008 PPEF1O14829 653 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-209ENST00000552008 SWT1Q5T5J6 900 aaKnown RBP6.26□□□□□ -1.41
LIMA1-209ENST00000552008 DACH1Q9UI36 760 aa6.26□□□□□ -1.41
LIMA1-209ENST00000552008 PCDHB3Q9Y5E6 796 aa6.26□□□□□ -1.41
LIMA1-209ENST00000552008 TLL1O43897 1013 aa6.25□□□□□ -1.41
LIMA1-209ENST00000552008 BLOC1S3Q6QNY0 202 aa6.25□□□□□ -1.41
LIMA1-209ENST00000552008 CADPS2Q86UW7 1296 aa6.25□□□□□ -1.41
LIMA1-209ENST00000552008 CRIPAKQ8N1N5 446 aa6.25□□□□□ -1.41
LIMA1-209ENST00000552008 PRR14Q9BWN1 585 aa6.25□□□□□ -1.41
LIMA1-209ENST00000552008 GMPR2Q9P2T1 348 aaKnown RBP6.25□□□□□ -1.41
LIMA1-209ENST00000552008 S1PR4O95977 384 aa6.24□□□□□ -1.41
LIMA1-209ENST00000552008 SLC4A3P48751 1232 aa6.24□□□□□ -1.41
LIMA1-209ENST00000552008 PDIA6Q15084 440 aa6.22□□□□□ -1.41
LIMA1-209ENST00000552008 RBM27Q9P2N5 1060 aaKnown RBP6.22□□□□□ -1.41
LIMA1-209ENST00000552008 AXIN1O15169 862 aa6.21□□□□□ -1.42
LIMA1-209ENST00000552008 PRIM1P49642 420 aaKnown RBP6.21□□□□□ -1.42
LIMA1-209ENST00000552008 FOXC1Q12948 553 aa6.21□□□□□ -1.42
LIMA1-209ENST00000552008 LMOD2Q6P5Q4 547 aa6.21□□□□□ -1.42
LIMA1-209ENST00000552008 AVPP01185 164 aa6.2□□□□□ -1.42
LIMA1-209ENST00000552008 LCE2CQ5TA81 110 aa6.2□□□□□ -1.42
LIMA1-209ENST00000552008 PKD2L1Q9P0L9 805 aa6.2□□□□□ -1.42
LIMA1-209ENST00000552008 PLA2G2CQ5R387 149 aa6.19□□□□□ -1.42
LIMA1-209ENST00000552008 CDHR5Q9HBB8 845 aa6.19□□□□□ -1.42
LIMA1-209ENST00000552008 FAM181BA6NEQ2 426 aa6.18□□□□□ -1.42
LIMA1-209ENST00000552008 SPDYE16A6NNV3 312 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-209ENST00000552008 CTC1Q2NKJ3 1217 aa6.18□□□□□ -1.42
LIMA1-209ENST00000552008 TERTO14746 1132 aaKnown RBP6.17□□□□□ -1.42
LIMA1-209ENST00000552008 ADH1BP00325 375 aa6.17□□□□□ -1.42
LIMA1-209ENST00000552008 PADI6Q6TGC4 694 aa6.16□□□□□ -1.42
LIMA1-209ENST00000552008 TTC13Q8NBP0 860 aa6.16□□□□□ -1.42
LIMA1-209ENST00000552008 TOR4AQ9NXH8 423 aa6.16□□□□□ -1.42
LIMA1-209ENST00000552008 GRXCR2A6NFK2 248 aa6.15□□□□□ -1.42
LIMA1-209ENST00000552008 SMCPP49901 116 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-209ENST00000552008 CYP4X1Q8N118 509 aa6.15□□□□□ -1.42
LIMA1-209ENST00000552008 SLC6A16Q9GZN6 736 aa6.15□□□□□ -1.42
LIMA1-209ENST00000552008 ACTN4O43707 911 aaKnown RBP6.13□□□□□ -1.43
LIMA1-209ENST00000552008 SNRPBP14678 240 aaKnown RBP6.13□□□□□ -1.43
LIMA1-209ENST00000552008 SUZ12Q15022 739 aaKnown RBP6.13□□□□□ -1.43
LIMA1-209ENST00000552008 KMT5BQ4FZB7 885 aa6.13□□□□□ -1.43
LIMA1-209ENST00000552008 EYA1Q99502 592 aa6.13□□□□□ -1.43
LIMA1-209ENST00000552008 NR1I2O75469 434 aa6.11□□□□□ -1.43
LIMA1-209ENST00000552008 OSBPP22059 807 aa6.11□□□□□ -1.43
LIMA1-209ENST00000552008 ATP13A2Q9NQ11 1180 aa6.11□□□□□ -1.43
LIMA1-209ENST00000552008 RPIAP49247 311 aa6.1□□□□□ -1.43
LIMA1-209ENST00000552008 TRIM47Q96LD4 638 aa6.1□□□□□ -1.43
LIMA1-209ENST00000552008 SENP2Q9HC62 589 aa6.1□□□□□ -1.43
LIMA1-209ENST00000552008 CFHP08603 1231 aa6.09□□□□□ -1.43
LIMA1-209ENST00000552008 ZSCAN1Q8NBB4 408 aa6.09□□□□□ -1.43
LIMA1-209ENST00000552008 NPDC1Q9NQX5 325 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-209ENST00000552008 TTC24A2A3L6 582 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-209ENST00000552008 CD2BP2O95400 341 aaKnown RBP6.08□□□□□ -1.44
LIMA1-209ENST00000552008 DNAJB2P25686 324 aa6.08□□□□□ -1.44
LIMA1-209ENST00000552008 SLC16A10Q8TF71 515 aa6.08□□□□□ -1.44
LIMA1-209ENST00000552008 LORP23490 312 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-209ENST00000552008 GMPRP36959 345 aa6.05□□□□□ -1.44
LIMA1-209ENST00000552008 SCUBE3Q8IX30 993 aa6.05□□□□□ -1.44
LIMA1-209ENST00000552008 KIFC2Q96AC6 838 aa6.05□□□□□ -1.44
LIMA1-209ENST00000552008 SPSB2Q99619 263 aa6.05□□□□□ -1.44
LIMA1-209ENST00000552008 TMEM134Q9H6X4 195 aa6.05□□□□□ -1.44
LIMA1-209ENST00000552008 SMPD1P17405 629 aa6.04□□□□□ -1.44
LIMA1-209ENST00000552008 FCF1Q9Y324 198 aaKnown RBP6.04□□□□□ -1.44
LIMA1-209ENST00000552008 SLC10A3P09131 477 aa6.02□□□□□ -1.45
LIMA1-209ENST00000552008 SNIP1Q8TAD8 396 aaKnown RBP6.02□□□□□ -1.45
LIMA1-209ENST00000552008 RBM46Q8TBY0 533 aaKnown RBP6.02□□□□□ -1.45
LIMA1-209ENST00000552008 IRF7Q92985 503 aa6.02□□□□□ -1.45
LIMA1-209ENST00000552008 NXF1Q9UBU9 619 aaKnown RBP6.02□□□□□ -1.45
LIMA1-209ENST00000552008 ARIH1Q9Y4X5 557 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-209ENST00000552008 E2F4Q16254 413 aa6.01□□□□□ -1.45
LIMA1-209ENST00000552008 PUS10Q3MIT2 529 aaKnown RBP6.01□□□□□ -1.45
LIMA1-209ENST00000552008 RCCD1A6NED2 376 aa6□□□□□ -1.45
LIMA1-209ENST00000552008 WNT7AO00755 349 aa6□□□□□ -1.45
LIMA1-209ENST00000552008 J3QL48 77 aa5.99□□□□□ -1.45
LIMA1-209ENST00000552008 ZBTB24O43167 697 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-209ENST00000552008 NPAS3Q8IXF0 933 aa5.98□□□□□ -1.45
LIMA1-209ENST00000552008 HPS1Q92902 700 aa5.98□□□□□ -1.45
LIMA1-209ENST00000552008 ADGRG1Q9Y653 693 aa5.98□□□□□ -1.45
LIMA1-209ENST00000552008 VEGFBP49765 207 aa5.97□□□□□ -1.45
LIMA1-209ENST00000552008 KCTD17Q8N5Z5 321 aa5.97□□□□□ -1.45
LIMA1-209ENST00000552008 DCAF8L2P0C7V8 631 aa5.96□□□□□ -1.46
LIMA1-209ENST00000552008 MRGPRX2Q96LB1 330 aa5.96□□□□□ -1.46
LIMA1-209ENST00000552008 H3BM21 787 aa5.95□□□□□ -1.46
LIMA1-209ENST00000552008 FAM160A2Q8N612 972 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-209ENST00000552008 ERBB4Q15303 1308 aa5.95□□□□□ -1.46
LIMA1-209ENST00000552008 TRIM32Q13049 653 aa5.94□□□□□ -1.46
LIMA1-209ENST00000552008 FAM161AQ3B820 660 aa5.94□□□□□ -1.46
LIMA1-209ENST00000552008 RSPH4AQ5TD94 716 aa5.94□□□□□ -1.46
LIMA1-209ENST00000552008 THAP11Q96EK4 314 aa5.94□□□□□ -1.46
LIMA1-209ENST00000552008 PRDM9Q9NQV7 894 aa5.94□□□□□ -1.46
LIMA1-209ENST00000552008 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.93□□□□□ -1.46
LIMA1-209ENST00000552008 FMNL1O95466 1100 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-209ENST00000552008 KCNMA1Q12791 1236 aa5.93□□□□□ -1.46
LIMA1-209ENST00000552008 PTGDRQ13258 359 aa5.93□□□□□ -1.46
LIMA1-209ENST00000552008 MORN1Q5T089 497 aa5.92□□□□□ -1.46
LIMA1-209ENST00000552008 REPIN1Q9BWE0 567 aaKnown RBP5.92□□□□□ -1.46
LIMA1-209ENST00000552008 BMP1P13497 986 aa5.9□□□□□ -1.46
LIMA1-209ENST00000552008 GSK3AP49840 483 aa5.9□□□□□ -1.46
LIMA1-209ENST00000552008 WDR70Q9NW82 654 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms