RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 FLIIQ13045 1269 aa12.61□□□□□ -0.39
NPAS3-208ENST00000550662 BEGAINQ9BUH8 593 aa12.61□□□□□ -0.39
NPAS3-208ENST00000550662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.6□□□□□ -0.39
NPAS3-208ENST00000550662 ZMYND15Q9H091 742 aa12.59□□□□□ -0.39
NPAS3-208ENST00000550662 SKIV2LQ15477 1246 aaKnown RBP12.58□□□□□ -0.4
NPAS3-208ENST00000550662 COL9A1P20849 921 aa12.57□□□□□ -0.4
NPAS3-208ENST00000550662 DIXDC1Q155Q3 683 aa12.57□□□□□ -0.4
NPAS3-208ENST00000550662 ARXQ96QS3 562 aa12.57□□□□□ -0.4
NPAS3-208ENST00000550662 PTPN5P54829 565 aa12.55□□□□□ -0.4
NPAS3-208ENST00000550662 NLRP7Q8WX94 980 aa12.55□□□□□ -0.4
NPAS3-208ENST00000550662 NBPF26B4DH59 902 aa12.54□□□□□ -0.4
NPAS3-208ENST00000550662 PACS2Q86VP3 889 aa12.54□□□□□ -0.4
NPAS3-208ENST00000550662 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
NPAS3-208ENST00000550662 EYA1Q99502 592 aa12.54□□□□□ -0.4
NPAS3-208ENST00000550662 FAM198AQ9UFP1 575 aa12.54□□□□□ -0.4
NPAS3-208ENST00000550662 RCCD1A6NED2 376 aa12.53□□□□□ -0.4
NPAS3-208ENST00000550662 ONECUT3O60422 494 aaPredicted RBP12.53□□□□□ -0.4
NPAS3-208ENST00000550662 THSD4Q6ZMP0 1018 aa12.53□□□□□ -0.4
NPAS3-208ENST00000550662 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
NPAS3-208ENST00000550662 TRIM6-TRIM34B2RNG4 842 aa12.52□□□□□ -0.41
NPAS3-208ENST00000550662 PROX2Q3B8N5 592 aa12.52□□□□□ -0.41
NPAS3-208ENST00000550662 SUPT5HO00267 1087 aaKnown RBP12.51□□□□□ -0.41
NPAS3-208ENST00000550662 WNT2BQ93097 391 aa12.51□□□□□ -0.41
NPAS3-208ENST00000550662 DNAJB2P25686 324 aa12.5□□□□□ -0.41
NPAS3-208ENST00000550662 SULF1Q8IWU6 871 aa12.5□□□□□ -0.41
NPAS3-208ENST00000550662 NBPF3Q9H094 633 aa12.5□□□□□ -0.41
NPAS3-208ENST00000550662 RABGEF1Q9UJ41 708 aa12.5□□□□□ -0.41
NPAS3-208ENST00000550662 GOLGA8CPA6NN73 597 aa12.49□□□□□ -0.41
NPAS3-208ENST00000550662 NUDT18Q6ZVK8 323 aa12.49□□□□□ -0.41
NPAS3-208ENST00000550662 TATDN2Q93075 761 aa12.49□□□□□ -0.41
NPAS3-208ENST00000550662 MYSM1Q5VVJ2 828 aa12.48□□□□□ -0.41
NPAS3-208ENST00000550662 PNMA3Q9UL41 463 aa12.48□□□□□ -0.41
NPAS3-208ENST00000550662 ATP1B4Q9UN42 357 aaPredicted RBP12.47□□□□□ -0.41
NPAS3-208ENST00000550662 CLK2P49760 499 aaKnown RBP12.46□□□□□ -0.41
NPAS3-208ENST00000550662 TBC1D2Q9BYX2 928 aa12.46□□□□□ -0.41
NPAS3-208ENST00000550662 POLR3EQ9NVU0 708 aa12.46□□□□□ -0.41
NPAS3-208ENST00000550662 TMEM134Q9H6X4 195 aa12.45□□□□□ -0.42
NPAS3-208ENST00000550662 CD46P15529 392 aa12.44□□□□□ -0.42
NPAS3-208ENST00000550662 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.44□□□□□ -0.42
NPAS3-208ENST00000550662 PROCA1Q8NCQ7 364 aaPredicted RBP12.43□□□□□ -0.42
NPAS3-208ENST00000550662 KIAA1468Q9P260 1216 aa12.42□□□□□ -0.42
NPAS3-208ENST00000550662 DDX11L8A8MPP1 907 aa12.4□□□□□ -0.42
NPAS3-208ENST00000550662 C3orf80F5H4A9 247 aa12.4□□□□□ -0.42
NPAS3-208ENST00000550662 TUSC1Q2TAM9 212 aa12.4□□□□□ -0.42
NPAS3-208ENST00000550662 LAPTM4BQ86VI4 370 aa12.4□□□□□ -0.42
NPAS3-208ENST00000550662 NUTM1Q86Y26 1132 aa12.4□□□□□ -0.42
NPAS3-208ENST00000550662 SPIRE2Q8WWL2 714 aa12.4□□□□□ -0.42
NPAS3-208ENST00000550662 RSPH4AQ5TD94 716 aa12.39□□□□□ -0.43
NPAS3-208ENST00000550662 IFFO2Q5TF58 517 aa12.39□□□□□ -0.43
NPAS3-208ENST00000550662 HOMEZQ8IX15 550 aa12.39□□□□□ -0.43
NPAS3-208ENST00000550662 MCM6Q14566 821 aa12.38□□□□□ -0.43
NPAS3-208ENST00000550662 A6NJR5 290 aa12.37□□□□□ -0.43
NPAS3-208ENST00000550662 UBTFP17480 764 aaKnown RBP12.37□□□□□ -0.43
NPAS3-208ENST00000550662 GJA5P36382 358 aa12.37□□□□□ -0.43
NPAS3-208ENST00000550662 RIC3Q7Z5B4 369 aa12.37□□□□□ -0.43
NPAS3-208ENST00000550662 ANKK1Q8NFD2 765 aa12.37□□□□□ -0.43
NPAS3-208ENST00000550662 SPTLC1O15269 473 aa12.36□□□□□ -0.43
NPAS3-208ENST00000550662 BANK1Q8NDB2 785 aa12.36□□□□□ -0.43
NPAS3-208ENST00000550662 ZFRQ96KR1 1074 aaKnown RBP12.36□□□□□ -0.43
NPAS3-208ENST00000550662 SMAPO00193 183 aa12.35□□□□□ -0.43
NPAS3-208ENST00000550662 PPP2R2DQ66LE6 453 aa12.35□□□□□ -0.43
NPAS3-208ENST00000550662 SOWAHBA6NEL2 793 aa12.34□□□□□ -0.43
NPAS3-208ENST00000550662 BCAMP50895 628 aa12.34□□□□□ -0.43
NPAS3-208ENST00000550662 TMEM259Q4ZIN3 620 aa12.34□□□□□ -0.43
NPAS3-208ENST00000550662 RDH13Q8NBN7 331 aa12.34□□□□□ -0.43
NPAS3-208ENST00000550662 LIMD1Q9UGP4 676 aa12.34□□□□□ -0.43
NPAS3-208ENST00000550662 SEPT9Q9UHD8 586 aaPredicted RBP12.34□□□□□ -0.43
NPAS3-208ENST00000550662 SPDYE5A6NIY4 337 aa12.33□□□□□ -0.44
NPAS3-208ENST00000550662 RFC5P40937 340 aa12.32□□□□□ -0.44
NPAS3-208ENST00000550662 HDGFP51858 240 aaKnown RBP12.32□□□□□ -0.44
NPAS3-208ENST00000550662 USP46P62068 366 aa12.32□□□□□ -0.44
NPAS3-208ENST00000550662 RSBN1LQ6PCB5 846 aaPredicted RBP12.32□□□□□ -0.44
NPAS3-208ENST00000550662 KDM4AO75164 1064 aa12.3□□□□□ -0.44
NPAS3-208ENST00000550662 SLC4A3P48751 1232 aa12.3□□□□□ -0.44
NPAS3-208ENST00000550662 MOXD2PA6NHM9 499 aa12.29□□□□□ -0.44
NPAS3-208ENST00000550662 RAD21O60216 631 aa12.29□□□□□ -0.44
NPAS3-208ENST00000550662 FAM98CQ17RN3 349 aaKnown RBP12.29□□□□□ -0.44
NPAS3-208ENST00000550662 GCGRP47871 477 aa12.28□□□□□ -0.44
NPAS3-208ENST00000550662 CLUAP1Q96AJ1 413 aa12.28□□□□□ -0.44
NPAS3-208ENST00000550662 SWT1Q5T5J6 900 aaKnown RBP12.27□□□□□ -0.45
NPAS3-208ENST00000550662 WBP1LQ9NX94 342 aa12.27□□□□□ -0.45
NPAS3-208ENST00000550662 A0A0G2JS52 829 aa12.26□□□□□ -0.45
NPAS3-208ENST00000550662 TRAK2O60296 914 aa12.26□□□□□ -0.45
NPAS3-208ENST00000550662 ITGBL1O95965 494 aaPredicted RBP12.26□□□□□ -0.45
NPAS3-208ENST00000550662 PRPF38BQ5VTL8 546 aaKnown RBP12.25□□□□□ -0.45
NPAS3-208ENST00000550662 SOCS7O14512 581 aa12.24□□□□□ -0.45
NPAS3-208ENST00000550662 LILRB3O75022 631 aa12.24□□□□□ -0.45
NPAS3-208ENST00000550662 APBB1O00213 710 aa12.23□□□□□ -0.45
NPAS3-208ENST00000550662 RGS20O76081 388 aa12.23□□□□□ -0.45
NPAS3-208ENST00000550662 NDUFV2P19404 249 aa12.23□□□□□ -0.45
NPAS3-208ENST00000550662 NYAP1Q6ZVC0 841 aa12.23□□□□□ -0.45
NPAS3-208ENST00000550662 SLF2Q8IX21 1173 aa12.23□□□□□ -0.45
NPAS3-208ENST00000550662 HOXA2O43364 376 aa12.22□□□□□ -0.45
NPAS3-208ENST00000550662 CSPP1Q1MSJ5 1256 aa12.22□□□□□ -0.45
NPAS3-208ENST00000550662 PROSER2Q86WR7 435 aaPredicted RBP12.22□□□□□ -0.45
NPAS3-208ENST00000550662 SLC10A3P09131 477 aa12.21□□□□□ -0.45
NPAS3-208ENST00000550662 FBXO31Q5XUX0 539 aaPredicted RBP12.21□□□□□ -0.45
NPAS3-208ENST00000550662 ZBTB3Q9H5J0 574 aa12.21□□□□□ -0.45
NPAS3-208ENST00000550662 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.21□□□□□ -0.45
NPAS3-208ENST00000550662 NUTM2BA6NNL0 878 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 464.5 ms