RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 WNK3Q9BYP7 1800 aa7.73□□□□□ -1.17
SCAF11-212ENST00000549162 FAM135BQ49AJ0 1406 aa7.73□□□□□ -1.17
SCAF11-212ENST00000549162 ANKRD30BQ9BXX2 1392 aa7.73□□□□□ -1.17
SCAF11-212ENST00000549162 FAM208AQ9UK61 1670 aaKnown RBP7.72□□□□□ -1.17
SCAF11-212ENST00000549162 DHX57Q6P158 1386 aaKnown RBP7.72□□□□□ -1.17
SCAF11-212ENST00000549162 STRCQ7RTU9 1775 aa7.71□□□□□ -1.17
SCAF11-212ENST00000549162 N4BP2Q86UW6 1770 aaPredicted RBP7.71□□□□□ -1.17
SCAF11-212ENST00000549162 ALS2Q96Q42 1657 aa7.71□□□□□ -1.18
SCAF11-212ENST00000549162 DNAJC5Q9H3Z4 198 aa7.71□□□□□ -1.18
SCAF11-212ENST00000549162 ASXL1Q8IXJ9 1541 aa7.71□□□□□ -1.18
SCAF11-212ENST00000549162 ADAMTS7Q9UKP4 1686 aa7.71□□□□□ -1.18
SCAF11-212ENST00000549162 TULP1O00294 542 aaPredicted RBP7.71□□□□□ -1.18
SCAF11-212ENST00000549162 CEP170BQ9Y4F5 1589 aaPredicted RBP7.7□□□□□ -1.18
SCAF11-212ENST00000549162 LMO7Q8WWI1 1683 aa7.7□□□□□ -1.18
SCAF11-212ENST00000549162 QRICH2Q9H0J4 1663 aa7.7□□□□□ -1.18
SCAF11-212ENST00000549162 MTUS2Q5JR59 1369 aa7.7□□□□□ -1.18
SCAF11-212ENST00000549162 PLCH1Q4KWH8 1693 aa7.69□□□□□ -1.18
SCAF11-212ENST00000549162 ZNF831Q5JPB2 1677 aa7.69□□□□□ -1.18
SCAF11-212ENST00000549162 PUS7Q96PZ0 661 aaKnown RBP7.69□□□□□ -1.18
SCAF11-212ENST00000549162 ARXQ96QS3 562 aa7.69□□□□□ -1.18
SCAF11-212ENST00000549162 KIF20BQ96Q89 1820 aa7.69□□□□□ -1.18
SCAF11-212ENST00000549162 TRPM3Q9HCF6 1732 aaPredicted RBP7.69□□□□□ -1.18
SCAF11-212ENST00000549162 COL17A1Q9UMD9 1497 aaPredicted RBP7.69□□□□□ -1.18
SCAF11-212ENST00000549162 A2ML1A8K2U0 1454 aa7.68□□□□□ -1.18
SCAF11-212ENST00000549162 ANKRD50Q9ULJ7 1429 aa7.68□□□□□ -1.18
SCAF11-212ENST00000549162 ABCA3Q99758 1704 aa7.68□□□□□ -1.18
SCAF11-212ENST00000549162 PIK3R4Q99570 1358 aa7.67□□□□□ -1.18
SCAF11-212ENST00000549162 ARID4BQ4LE39 1312 aaPredicted RBP7.67□□□□□ -1.18
SCAF11-212ENST00000549162 PIK3C2GO75747 1445 aa7.67□□□□□ -1.18
SCAF11-212ENST00000549162 NHSL1Q5SYE7 1610 aa7.67□□□□□ -1.18
SCAF11-212ENST00000549162 TRIM26Q12899 539 aaPredicted RBP7.66□□□□□ -1.18
SCAF11-212ENST00000549162 VSIG10Q8N0Z9 540 aa7.66□□□□□ -1.18
SCAF11-212ENST00000549162 SETD1BQ9UPS6 1966 aaKnown RBP7.66□□□□□ -1.18
SCAF11-212ENST00000549162 PTCH1Q13635 1447 aa7.65□□□□□ -1.18
SCAF11-212ENST00000549162 RGPD1P0DJD0 1748 aa7.65□□□□□ -1.18
SCAF11-212ENST00000549162 PEAK1Q9H792 1746 aa7.65□□□□□ -1.18
SCAF11-212ENST00000549162 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.65□□□□□ -1.19
SCAF11-212ENST00000549162 SIRT1Q96EB6 747 aa7.64□□□□□ -1.19
SCAF11-212ENST00000549162 NKTRP30414 1462 aaKnown RBP7.64□□□□□ -1.19
SCAF11-212ENST00000549162 PARP4Q9UKK3 1724 aaKnown RBP7.64□□□□□ -1.19
SCAF11-212ENST00000549162 CDK12Q9NYV4 1490 aaPredicted RBP7.63□□□□□ -1.19
SCAF11-212ENST00000549162 TSPOAP1O95153 1857 aa7.63□□□□□ -1.19
SCAF11-212ENST00000549162 BRD4O60885 1362 aaPredicted RBP7.63□□□□□ -1.19
SCAF11-212ENST00000549162 KDM2AQ9Y2K7 1162 aa7.63□□□□□ -1.19
SCAF11-212ENST00000549162 RPGRIP1LQ68CZ1 1315 aa7.62□□□□□ -1.19
SCAF11-212ENST00000549162 KANK4Q5T7N3 995 aaPredicted RBP7.61□□□□□ -1.19
SCAF11-212ENST00000549162 STRCP1A6NGW2 1772 aa7.61□□□□□ -1.19
SCAF11-212ENST00000549162 DCCP43146 1447 aa7.6□□□□□ -1.19
SCAF11-212ENST00000549162 NPC1L1Q9UHC9 1359 aa7.6□□□□□ -1.19
SCAF11-212ENST00000549162 RGPD3A6NKT7 1758 aaPredicted RBP7.6□□□□□ -1.19
SCAF11-212ENST00000549162 RGPD4Q7Z3J3 1758 aa7.6□□□□□ -1.19
SCAF11-212ENST00000549162 KIF15Q9NS87 1388 aa7.6□□□□□ -1.19
SCAF11-212ENST00000549162 FAM9AQ8IZU1 332 aaPredicted RBP7.59□□□□□ -1.19
SCAF11-212ENST00000549162 EFCAB2Q5VUJ9 269 aa7.59□□□□□ -1.19
SCAF11-212ENST00000549162 RAB3GAP2Q9H2M9 1393 aa7.59□□□□□ -1.19
SCAF11-212ENST00000549162 SMG6Q86US8 1419 aaKnown RBP7.58□□□□□ -1.2
SCAF11-212ENST00000549162 PLEKHD1A6NEE1 506 aa7.58□□□□□ -1.2
SCAF11-212ENST00000549162 TTBK1Q5TCY1 1321 aaPredicted RBP7.58□□□□□ -1.2
SCAF11-212ENST00000549162 COL24A1Q17RW2 1714 aa7.58□□□□□ -1.2
SCAF11-212ENST00000549162 FBLN2P98095 1184 aa7.58□□□□□ -1.2
SCAF11-212ENST00000549162 SLC4A2P04920 1241 aa7.57□□□□□ -1.2
SCAF11-212ENST00000549162 ATXN8OSP0DMR3 200 aa7.57□□□□□ -1.2
SCAF11-212ENST00000549162 LRRC37A3O60309 1634 aa7.56□□□□□ -1.2
SCAF11-212ENST00000549162 PTPRMP28827 1452 aa7.56□□□□□ -1.2
SCAF11-212ENST00000549162 SCAF11Q99590 1463 aaKnown RBP7.56□□□□□ -1.2
SCAF11-212ENST00000549162 KTN1Q86UP2 1357 aaKnown RBP7.55□□□□□ -1.2
SCAF11-212ENST00000549162 NINLQ9Y2I6 1382 aa7.55□□□□□ -1.2
SCAF11-212ENST00000549162 AHDC1Q5TGY3 1603 aaPredicted RBP7.55□□□□□ -1.2
SCAF11-212ENST00000549162 CCDC144AA2RUR9 1427 aa7.54□□□□□ -1.2
SCAF11-212ENST00000549162 GTF3C3Q9Y5Q9 886 aa7.54□□□□□ -1.2
SCAF11-212ENST00000549162 NCAPD2Q15021 1401 aa7.54□□□□□ -1.2
SCAF11-212ENST00000549162 ZEB1P37275 1124 aaPredicted RBP7.53□□□□□ -1.2
SCAF11-212ENST00000549162 PIK3C2AO00443 1686 aa7.53□□□□□ -1.2
SCAF11-212ENST00000549162 NUP155O75694 1391 aa7.53□□□□□ -1.2
SCAF11-212ENST00000549162 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.52□□□□□ -1.2
SCAF11-212ENST00000549162 YEATS2Q9ULM3 1422 aa7.52□□□□□ -1.21
SCAF11-212ENST00000549162 QSER1Q2KHR3 1735 aa7.52□□□□□ -1.21
SCAF11-212ENST00000549162 RREB1Q92766 1687 aa7.52□□□□□ -1.21
SCAF11-212ENST00000549162 PAPPAQ13219 1627 aa7.52□□□□□ -1.21
SCAF11-212ENST00000549162 SIPA1L3O60292 1781 aaPredicted RBP7.52□□□□□ -1.21
SCAF11-212ENST00000549162 PLEKHG1Q9ULL1 1385 aa7.51□□□□□ -1.21
SCAF11-212ENST00000549162 SLIT3O75094 1523 aa7.51□□□□□ -1.21
SCAF11-212ENST00000549162 NWD2Q9ULI1 1742 aa7.51□□□□□ -1.21
SCAF11-212ENST00000549162 COL18A1P39060 1754 aa7.51□□□□□ -1.21
SCAF11-212ENST00000549162 ANKARQ7Z5J8 1434 aa7.51□□□□□ -1.21
SCAF11-212ENST00000549162 LTBP4Q8N2S1 1624 aa7.5□□□□□ -1.21
SCAF11-212ENST00000549162 PKD1L3Q7Z443 1732 aa7.49□□□□□ -1.21
SCAF11-212ENST00000549162 GLI3P10071 1580 aa7.49□□□□□ -1.21
SCAF11-212ENST00000549162 ATP7BP35670 1465 aa7.49□□□□□ -1.21
SCAF11-212ENST00000549162 NRAPQ86VF7 1730 aa7.48□□□□□ -1.21
SCAF11-212ENST00000549162 LRP6O75581 1613 aa7.48□□□□□ -1.21
SCAF11-212ENST00000549162 HOMEZQ8IX15 550 aa7.48□□□□□ -1.21
SCAF11-212ENST00000549162 TULP4Q9NRJ4 1543 aa7.47□□□□□ -1.21
SCAF11-212ENST00000549162 LOC105371045A0A1W2PR82 267 aa7.47□□□□□ -1.21
SCAF11-212ENST00000549162 UBTFP17480 764 aaKnown RBP7.46□□□□□ -1.21
SCAF11-212ENST00000549162 VIRMAQ69YN4 1812 aaKnown RBP7.46□□□□□ -1.21
SCAF11-212ENST00000549162 MYCNP04198 464 aaPredicted RBP7.46□□□□□ -1.21
SCAF11-212ENST00000549162 ADAMTS13Q76LX8 1427 aa7.46□□□□□ -1.22
SCAF11-212ENST00000549162 IBTKQ9P2D0 1353 aaPredicted RBP7.46□□□□□ -1.22
SCAF11-212ENST00000549162 RNF216Q9NWF9 866 aaPredicted RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms