RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 IDI1Q13907 227 aa18.56■□□□□ 0.56
PTCH1-215ENST00000547672 PREX1Q8TCU6 1659 aa18.56■□□□□ 0.56
PTCH1-215ENST00000547672 HDGFP51858 240 aaKnown RBP18.55■□□□□ 0.56
PTCH1-215ENST00000547672 ZFYVE9O95405 1425 aa18.55■□□□□ 0.56
PTCH1-215ENST00000547672 UGGT1Q9NYU2 1555 aa18.55■□□□□ 0.56
PTCH1-215ENST00000547672 SCAF11Q99590 1463 aaKnown RBP18.54■□□□□ 0.56
PTCH1-215ENST00000547672 NRXN1Q9ULB1 1477 aa18.54■□□□□ 0.56
PTCH1-215ENST00000547672 C11orf95C9JLR9 678 aaPredicted RBP18.54■□□□□ 0.56
PTCH1-215ENST00000547672 STAG3Q9UJ98 1225 aa18.54■□□□□ 0.56
PTCH1-215ENST00000547672 IFT172Q9UG01 1749 aa18.54■□□□□ 0.56
PTCH1-215ENST00000547672 ERVK-7P63135 1459 aa18.53■□□□□ 0.56
PTCH1-215ENST00000547672 SYNMO15061 1565 aa18.53■□□□□ 0.56
PTCH1-215ENST00000547672 MLECQ14165 292 aa18.53■□□□□ 0.56
PTCH1-215ENST00000547672 C14orf93Q9H972 538 aaKnown RBP18.52■□□□□ 0.56
PTCH1-215ENST00000547672 CLTCQ00610 1675 aaKnown RBP18.52■□□□□ 0.56
PTCH1-215ENST00000547672 SIGLEC1Q9BZZ2 1709 aa18.52■□□□□ 0.55
PTCH1-215ENST00000547672 PPLO60437 1756 aa18.51■□□□□ 0.55
PTCH1-215ENST00000547672 ZMYM3Q14202 1370 aa18.51■□□□□ 0.55
PTCH1-215ENST00000547672 ADGRF5Q8IZF2 1346 aa18.5■□□□□ 0.55
PTCH1-215ENST00000547672 SETBP1Q9Y6X0 1596 aa18.5■□□□□ 0.55
PTCH1-215ENST00000547672 SPATA31D1Q6ZQQ2 1576 aa18.49■□□□□ 0.55
PTCH1-215ENST00000547672 MROH2AA6NES4 1674 aa18.48■□□□□ 0.55
PTCH1-215ENST00000547672 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.48■□□□□ 0.55
PTCH1-215ENST00000547672 POLR3GLQ9BT43 218 aa18.48■□□□□ 0.55
PTCH1-215ENST00000547672 CFAP70Q5T0N1 1121 aa18.47■□□□□ 0.55
PTCH1-215ENST00000547672 FBXO31Q5XUX0 539 aaPredicted RBP18.47■□□□□ 0.55
PTCH1-215ENST00000547672 KTN1Q86UP2 1357 aaKnown RBP18.46■□□□□ 0.55
PTCH1-215ENST00000547672 TESK2Q96S53 571 aa18.46■□□□□ 0.55
PTCH1-215ENST00000547672 IQGAP1P46940 1657 aa18.46■□□□□ 0.55
PTCH1-215ENST00000547672 PIK3C2GO75747 1445 aa18.46■□□□□ 0.55
PTCH1-215ENST00000547672 TMEM131LA2VDJ0 1609 aa18.45■□□□□ 0.54
PTCH1-215ENST00000547672 NEXMIFQ5QGS0 1516 aa18.43■□□□□ 0.54
PTCH1-215ENST00000547672 PRKRIP1Q9H875 184 aaPredicted RBP18.41■□□□□ 0.54
PTCH1-215ENST00000547672 TNRQ92752 1358 aa18.41■□□□□ 0.54
PTCH1-215ENST00000547672 SBNO2Q9Y2G9 1366 aa18.41■□□□□ 0.54
PTCH1-215ENST00000547672 KDM5AP29375 1690 aaKnown RBP18.39■□□□□ 0.53
PTCH1-215ENST00000547672 YTHDC1Q96MU7 727 aaKnown RBP18.39■□□□□ 0.53
PTCH1-215ENST00000547672 PUS7Q96PZ0 661 aaKnown RBP18.39■□□□□ 0.53
PTCH1-215ENST00000547672 RALBP1Q15311 655 aa18.38■□□□□ 0.53
PTCH1-215ENST00000547672 CENPJQ9HC77 1338 aaPredicted RBP18.38■□□□□ 0.53
PTCH1-215ENST00000547672 NLRP1Q9C000 1473 aa18.37■□□□□ 0.53
PTCH1-215ENST00000547672 A2ML1A8K2U0 1454 aa18.36■□□□□ 0.53
PTCH1-215ENST00000547672 MYO3AQ8NEV4 1616 aa18.34■□□□□ 0.53
PTCH1-215ENST00000547672 RIMS2Q9UQ26 1411 aa18.33■□□□□ 0.53
PTCH1-215ENST00000547672 DISP3Q9P2K9 1392 aa18.33■□□□□ 0.53
PTCH1-215ENST00000547672 MYO5BQ9ULV0 1848 aa18.33■□□□□ 0.52
PTCH1-215ENST00000547672 TRAK1Q9UPV9 953 aa18.32■□□□□ 0.52
PTCH1-215ENST00000547672 ADGRB1O14514 1584 aa18.32■□□□□ 0.52
PTCH1-215ENST00000547672 EVC2Q86UK5 1308 aa18.29■□□□□ 0.52
PTCH1-215ENST00000547672 NUTM2DQ5VT03 806 aaPredicted RBP18.29■□□□□ 0.52
PTCH1-215ENST00000547672 TMEM132EQ6IEE7 984 aa18.29■□□□□ 0.52
PTCH1-215ENST00000547672 PANK3Q9H999 370 aa18.29■□□□□ 0.52
PTCH1-215ENST00000547672 KNSTRNQ9Y448 316 aa18.29■□□□□ 0.52
PTCH1-215ENST00000547672 EID1Q9Y6B2 187 aa18.29■□□□□ 0.52
PTCH1-215ENST00000547672 FER1L4A9Z1Z3 1794 aa18.28■□□□□ 0.52
PTCH1-215ENST00000547672 THEMISQ8N1K5 641 aaPredicted RBP18.28■□□□□ 0.52
PTCH1-215ENST00000547672 MRS2Q9HD23 443 aa18.27■□□□□ 0.52
PTCH1-215ENST00000547672 PER1O15534 1290 aaPredicted RBP18.26■□□□□ 0.51
PTCH1-215ENST00000547672 TMEM2Q9UHN6 1383 aa18.26■□□□□ 0.51
PTCH1-215ENST00000547672 ALKQ9UM73 1620 aa18.26■□□□□ 0.51
PTCH1-215ENST00000547672 SIRT1Q96EB6 747 aa18.25■□□□□ 0.51
PTCH1-215ENST00000547672 POGKQ9P215 609 aa18.25■□□□□ 0.51
PTCH1-215ENST00000547672 MYBBP1AQ9BQG0 1328 aaKnown RBP18.24■□□□□ 0.51
PTCH1-215ENST00000547672 YTHDC2Q9H6S0 1430 aaKnown RBP18.23■□□□□ 0.51
PTCH1-215ENST00000547672 C3P01024 1663 aa18.23■□□□□ 0.51
PTCH1-215ENST00000547672 NPC1L1Q9UHC9 1359 aa18.23■□□□□ 0.51
PTCH1-215ENST00000547672 TMC1Q8TDI8 760 aa18.23■□□□□ 0.51
PTCH1-215ENST00000547672 BRD4O60885 1362 aaPredicted RBP18.22■□□□□ 0.51
PTCH1-215ENST00000547672 NINLQ9Y2I6 1382 aa18.22■□□□□ 0.51
PTCH1-215ENST00000547672 BCANQ96GW7 911 aa18.22■□□□□ 0.51
PTCH1-215ENST00000547672 QRICH2Q9H0J4 1663 aa18.22■□□□□ 0.51
PTCH1-215ENST00000547672 UBR1Q8IWV7 1749 aa18.21■□□□□ 0.51
PTCH1-215ENST00000547672 LRPPRCP42704 1394 aaKnown RBP18.21■□□□□ 0.51
PTCH1-215ENST00000547672 ABCC11Q96J66 1382 aa18.21■□□□□ 0.51
PTCH1-215ENST00000547672 DLC1Q96QB1 1528 aa18.2■□□□□ 0.5
PTCH1-215ENST00000547672 NLRP13Q86W25 1043 aa18.2■□□□□ 0.5
PTCH1-215ENST00000547672 STK26Q9P289 416 aa18.2■□□□□ 0.5
PTCH1-215ENST00000547672 CEBPAP49715 358 aaPredicted RBP18.19■□□□□ 0.5
PTCH1-215ENST00000547672 TXNDC2Q86VQ3 553 aa18.19■□□□□ 0.5
PTCH1-215ENST00000547672 PARD3Q8TEW0 1356 aa18.18■□□□□ 0.5
PTCH1-215ENST00000547672 PLEKHG1Q9ULL1 1385 aa18.18■□□□□ 0.5
PTCH1-215ENST00000547672 ARHGEF28Q8N1W1 1705 aaKnown RBP18.18■□□□□ 0.5
PTCH1-215ENST00000547672 PRAM1Q96QH2 718 aa18.16■□□□□ 0.5
PTCH1-215ENST00000547672 ATAD2Q6PL18 1390 aa18.16■□□□□ 0.5
PTCH1-215ENST00000547672 SLIT1O75093 1534 aa18.15■□□□□ 0.5
PTCH1-215ENST00000547672 ASXL1Q8IXJ9 1541 aa18.15■□□□□ 0.5
PTCH1-215ENST00000547672 FAM135BQ49AJ0 1406 aa18.14■□□□□ 0.49
PTCH1-215ENST00000547672 PTPRMP28827 1452 aa18.14■□□□□ 0.49
PTCH1-215ENST00000547672 SETD1BQ9UPS6 1966 aaKnown RBP18.13■□□□□ 0.49
PTCH1-215ENST00000547672 TBX22Q9Y458 520 aa18.13■□□□□ 0.49
PTCH1-215ENST00000547672 ARHGAP23Q9P227 1491 aa18.13■□□□□ 0.49
PTCH1-215ENST00000547672 SRPK2P78362 688 aaKnown RBP18.12■□□□□ 0.49
PTCH1-215ENST00000547672 CC2D1BQ5T0F9 858 aaKnown RBP18.12■□□□□ 0.49
PTCH1-215ENST00000547672 FAM9BQ8IZU0 186 aa18.12■□□□□ 0.49
PTCH1-215ENST00000547672 TERF2IPQ9NYB0 399 aa18.12■□□□□ 0.49
PTCH1-215ENST00000547672 ADAMTSL3P82987 1691 aa18.12■□□□□ 0.49
PTCH1-215ENST00000547672 HNRNPUQ00839 825 aaKnown RBP eCLIP18.11■□□□□ 0.49
PTCH1-215ENST00000547672 AMER1Q5JTC6 1135 aaPredicted RBP18.11■□□□□ 0.49
PTCH1-215ENST00000547672 TECPR2O15040 1411 aa18.1■□□□□ 0.49
PTCH1-215ENST00000547672 CNGB1Q14028 1251 aaPredicted RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms