RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 STK24Q9Y6E0 443 aa12.93□□□□□ -0.34
VPS29-203ENST00000546588 MIA2Q96PC5 1412 aa12.93□□□□□ -0.34
VPS29-203ENST00000546588 PTPN23Q9H3S7 1636 aa12.92□□□□□ -0.34
VPS29-203ENST00000546588 CDC42BPBQ9Y5S2 1711 aa12.92□□□□□ -0.34
VPS29-203ENST00000546588 MYO5CQ9NQX4 1742 aa12.91□□□□□ -0.34
VPS29-203ENST00000546588 FGD6Q6ZV73 1430 aa12.91□□□□□ -0.34
VPS29-203ENST00000546588 ARSIQ5FYB1 569 aa12.91□□□□□ -0.34
VPS29-203ENST00000546588 CROCC2H7BZ55 1655 aa12.91□□□□□ -0.34
VPS29-203ENST00000546588 ARAP3Q8WWN8 1544 aa12.91□□□□□ -0.34
VPS29-203ENST00000546588 CCNB3Q8WWL7 1395 aa12.89□□□□□ -0.35
VPS29-203ENST00000546588 ABCA9Q8IUA7 1624 aa12.88□□□□□ -0.35
VPS29-203ENST00000546588 DAXXQ9UER7 740 aaPredicted RBP12.88□□□□□ -0.35
VPS29-203ENST00000546588 MAPKBP1O60336 1514 aa12.88□□□□□ -0.35
VPS29-203ENST00000546588 TTC37Q6PGP7 1564 aa12.87□□□□□ -0.35
VPS29-203ENST00000546588 CDK11AQ9UQ88 783 aaPredicted RBP12.87□□□□□ -0.35
VPS29-203ENST00000546588 DNMT1P26358 1616 aaKnown RBP12.87□□□□□ -0.35
VPS29-203ENST00000546588 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS29-203ENST00000546588 RNF166Q96A37 237 aaPredicted RBP12.86□□□□□ -0.35
VPS29-203ENST00000546588 GCC2Q8IWJ2 1684 aa12.86□□□□□ -0.35
VPS29-203ENST00000546588 GPATCH8Q9UKJ3 1502 aaKnown RBP12.85□□□□□ -0.35
VPS29-203ENST00000546588 KHSRPQ92945 711 aaKnown RBP eCLIP12.85□□□□□ -0.356e-11■□□□□ 11.2
VPS29-203ENST00000546588 WDR7Q9Y4E6 1490 aa12.85□□□□□ -0.35
VPS29-203ENST00000546588 ZNF316A6NFI3 1004 aaPredicted RBP12.84□□□□□ -0.35
VPS29-203ENST00000546588 ADGBQ8N7X0 1667 aa12.83□□□□□ -0.35
VPS29-203ENST00000546588 ARHGEF5Q12774 1597 aa12.83□□□□□ -0.36
VPS29-203ENST00000546588 C2orf72A6NCS6 295 aa12.83□□□□□ -0.36
VPS29-203ENST00000546588 PPARGC1BQ86YN6 1023 aaKnown RBP12.83□□□□□ -0.36
VPS29-203ENST00000546588 PCGF6Q9BYE7 350 aa12.83□□□□□ -0.36
VPS29-203ENST00000546588 MYT1LQ9UL68 1186 aa12.83□□□□□ -0.36
VPS29-203ENST00000546588 AKNAQ7Z591 1439 aa12.82□□□□□ -0.36
VPS29-203ENST00000546588 RYDENQ9NUL5 291 aaKnown RBP12.82□□□□□ -0.36
VPS29-203ENST00000546588 SAMD9LQ8IVG5 1584 aa12.8□□□□□ -0.36
VPS29-203ENST00000546588 SLC34A2O95436 690 aa12.79□□□□□ -0.36
VPS29-203ENST00000546588 PTGER2P43116 358 aa12.79□□□□□ -0.36
VPS29-203ENST00000546588 CAMSAP2Q08AD1 1489 aa12.78□□□□□ -0.36
VPS29-203ENST00000546588 SHANK2Q9UPX8 1470 aa12.78□□□□□ -0.36
VPS29-203ENST00000546588 GLI2P10070 1586 aa12.78□□□□□ -0.36
VPS29-203ENST00000546588 MAST1Q9Y2H9 1570 aa12.78□□□□□ -0.36
VPS29-203ENST00000546588 PLEKHD1A6NEE1 506 aa12.78□□□□□ -0.36
VPS29-203ENST00000546588 ATP1B4Q9UN42 357 aaPredicted RBP12.78□□□□□ -0.36
VPS29-203ENST00000546588 CFAP74Q9C0B2 1584 aa12.77□□□□□ -0.36
VPS29-203ENST00000546588 MAP3K4Q9Y6R4 1608 aa12.77□□□□□ -0.36
VPS29-203ENST00000546588 ASXL2Q76L83 1435 aa12.76□□□□□ -0.37
VPS29-203ENST00000546588 ADGRL2O95490 1459 aa12.75□□□□□ -0.37
VPS29-203ENST00000546588 ABCC1P33527 1531 aa12.75□□□□□ -0.37
VPS29-203ENST00000546588 PLCH2O75038 1416 aa12.74□□□□□ -0.37
VPS29-203ENST00000546588 PLEKHH2Q8IVE3 1493 aa12.73□□□□□ -0.37
VPS29-203ENST00000546588 HFM1A2PYH4 1435 aa12.73□□□□□ -0.37
VPS29-203ENST00000546588 ERICH6Q7L0X2 663 aa12.73□□□□□ -0.37
VPS29-203ENST00000546588 PLXNC1O60486 1568 aa12.73□□□□□ -0.37
VPS29-203ENST00000546588 DIP2BQ9P265 1576 aa12.73□□□□□ -0.37
VPS29-203ENST00000546588 DAPK1P53355 1430 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 KIAA1107Q9UPP5 1409 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 KIF13AQ9H1H9 1805 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 NUDT7P0C024 238 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 LSM11P83369 360 aaKnown RBP eCLIP12.72□□□□□ -0.379e-7■■■□□ 16.4
VPS29-203ENST00000546588 POTEEQ6S8J3 1075 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 PCDHGA4Q9Y5G9 962 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 MBD5Q9P267 1494 aa12.72□□□□□ -0.37
VPS29-203ENST00000546588 PTPRKQ15262 1439 aa12.71□□□□□ -0.37
VPS29-203ENST00000546588 ROCK1Q13464 1354 aa12.71□□□□□ -0.37
VPS29-203ENST00000546588 PPP1R37O75864 691 aa12.7□□□□□ -0.38
VPS29-203ENST00000546588 ANKRD13DQ6ZTN6 518 aa12.7□□□□□ -0.38
VPS29-203ENST00000546588 ARHGAP5Q13017 1502 aa12.69□□□□□ -0.38
VPS29-203ENST00000546588 PBX2P40425 430 aa12.69□□□□□ -0.38
VPS29-203ENST00000546588 LHX6Q9UPM6 363 aa12.69□□□□□ -0.38
VPS29-203ENST00000546588 PPRC1Q5VV67 1664 aaKnown RBP12.69□□□□□ -0.38
VPS29-203ENST00000546588 ABCC5O15440 1437 aa12.69□□□□□ -0.38
VPS29-203ENST00000546588 HRCP23327 699 aa12.68□□□□□ -0.38
VPS29-203ENST00000546588 SYCP2Q9BX26 1530 aa12.67□□□□□ -0.38
VPS29-203ENST00000546588 CCDC141Q6ZP82 1450 aa12.67□□□□□ -0.38
VPS29-203ENST00000546588 KDM4FA0A1W2PPD8 638 aa12.67□□□□□ -0.38
VPS29-203ENST00000546588 ARID3CA6NKF2 412 aa12.67□□□□□ -0.38
VPS29-203ENST00000546588 TMC2Q8TDI7 906 aa12.67□□□□□ -0.38
VPS29-203ENST00000546588 INO80Q9ULG1 1556 aaPredicted RBP12.67□□□□□ -0.38
VPS29-203ENST00000546588 NAIPQ13075 1403 aa12.66□□□□□ -0.38
VPS29-203ENST00000546588 WDR70Q9NW82 654 aa12.66□□□□□ -0.38
VPS29-203ENST00000546588 KDM5CP41229 1560 aa12.65□□□□□ -0.38
VPS29-203ENST00000546588 SETD5Q9C0A6 1442 aa12.64□□□□□ -0.39
VPS29-203ENST00000546588 NEO1Q92859 1461 aa12.64□□□□□ -0.39
VPS29-203ENST00000546588 ARHGEF12Q9NZN5 1544 aa12.63□□□□□ -0.39
VPS29-203ENST00000546588 BCORL1Q5H9F3 1711 aa12.63□□□□□ -0.39
VPS29-203ENST00000546588 RICTORQ6R327 1708 aa12.63□□□□□ -0.39
VPS29-203ENST00000546588 CFDP1Q9UEE9 299 aaPredicted RBP12.63□□□□□ -0.39
VPS29-203ENST00000546588 FANCAO15360 1455 aa12.63□□□□□ -0.39
VPS29-203ENST00000546588 RSPH4AQ5TD94 716 aa12.62□□□□□ -0.39
VPS29-203ENST00000546588 KDM6BO15054 1643 aa12.62□□□□□ -0.39
VPS29-203ENST00000546588 ZFYVE16Q7Z3T8 1539 aa12.62□□□□□ -0.39
VPS29-203ENST00000546588 ACIN1Q9UKV3 1341 aaKnown RBP12.62□□□□□ -0.39
VPS29-203ENST00000546588 KDM5DQ9BY66 1539 aa12.61□□□□□ -0.39
VPS29-203ENST00000546588 NCOA1Q15788 1441 aa12.61□□□□□ -0.39
VPS29-203ENST00000546588 RAB3GAP2Q9H2M9 1393 aa12.6□□□□□ -0.39
VPS29-203ENST00000546588 EIF2AK4Q9P2K8 1649 aaKnown RBP12.6□□□□□ -0.39
VPS29-203ENST00000546588 PTCD2Q8WV60 388 aaKnown RBP12.6□□□□□ -0.39
VPS29-203ENST00000546588 AXIN2Q9Y2T1 843 aa12.6□□□□□ -0.39
VPS29-203ENST00000546588 RTEL1-TNFRSF6BF6WH68 1400 aa12.6□□□□□ -0.39
VPS29-203ENST00000546588 C9orf84Q5VXU9 1444 aa12.6□□□□□ -0.39
VPS29-203ENST00000546588 UNC13BO14795 1591 aa12.6□□□□□ -0.39
VPS29-203ENST00000546588 KIDINS220Q9ULH0 1771 aa12.59□□□□□ -0.39
VPS29-203ENST00000546588 FAM50AQ14320 339 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms