RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SCAF11Q99590 1463 aaKnown RBP20.78■□□□□ 0.92
LDLR-204ENST00000545707 CDCA8Q53HL2 280 aa20.77■□□□□ 0.92
LDLR-204ENST00000545707 GOLGA2Q08379 1002 aa20.77■□□□□ 0.92
LDLR-204ENST00000545707 LAS1LQ9Y4W2 734 aaKnown RBP20.77■□□□□ 0.92
LDLR-204ENST00000545707 SPINK5Q9NQ38 1064 aaPredicted RBP20.76■□□□□ 0.91
LDLR-204ENST00000545707 CLTCL1P53675 1640 aa20.75■□□□□ 0.91
LDLR-204ENST00000545707 TRPM2O94759 1503 aa20.75■□□□□ 0.91
LDLR-204ENST00000545707 PTPRTO14522 1441 aa20.75■□□□□ 0.91
LDLR-204ENST00000545707 ZNF521Q96K83 1311 aa20.75■□□□□ 0.91
LDLR-204ENST00000545707 IQGAP1P46940 1657 aa20.75■□□□□ 0.91
LDLR-204ENST00000545707 ADGRF5Q8IZF2 1346 aa20.74■□□□□ 0.91
LDLR-204ENST00000545707 APAF1O14727 1248 aa20.74■□□□□ 0.91
LDLR-204ENST00000545707 RTL5Q5HYW3 569 aaPredicted RBP20.74■□□□□ 0.91
LDLR-204ENST00000545707 ZFYVE16Q7Z3T8 1539 aa20.73■□□□□ 0.91
LDLR-204ENST00000545707 ASXL1Q8IXJ9 1541 aa20.72■□□□□ 0.91
LDLR-204ENST00000545707 SCAPERQ9BY12 1400 aa20.72■□□□□ 0.91
LDLR-204ENST00000545707 RTEL1-TNFRSF6BF6WH68 1400 aa20.71■□□□□ 0.91
LDLR-204ENST00000545707 UGGT1Q9NYU2 1555 aa20.71■□□□□ 0.91
LDLR-204ENST00000545707 SLFN5Q08AF3 891 aa20.71■□□□□ 0.91
LDLR-204ENST00000545707 CARD14Q9BXL6 1004 aa20.71■□□□□ 0.91
LDLR-204ENST00000545707 KDM2BQ8NHM5 1336 aa20.7■□□□□ 0.9
LDLR-204ENST00000545707 KANK1Q14678 1352 aa20.7■□□□□ 0.9
LDLR-204ENST00000545707 SPHKAPQ2M3C7 1700 aa20.69■□□□□ 0.9
LDLR-204ENST00000545707 UHRF1BP1LA0JNW5 1464 aa20.69■□□□□ 0.9
LDLR-204ENST00000545707 DMRT2Q9Y5R5 561 aa20.69■□□□□ 0.9
LDLR-204ENST00000545707 SYNMO15061 1565 aa20.69■□□□□ 0.9
LDLR-204ENST00000545707 EIF3AQ14152 1382 aaKnown RBP20.68■□□□□ 0.9
LDLR-204ENST00000545707 BCAR3O75815 825 aa20.67■□□□□ 0.9
LDLR-204ENST00000545707 STAC3Q96MF2 364 aa20.67■□□□□ 0.9
LDLR-204ENST00000545707 PIK3C2GO75747 1445 aa20.67■□□□□ 0.9
LDLR-204ENST00000545707 CEP152O94986 1710 aa20.67■□□□□ 0.9
LDLR-204ENST00000545707 CHGAP10645 457 aaKnown RBP20.66■□□□□ 0.9
LDLR-204ENST00000545707 FANCAO15360 1455 aa20.66■□□□□ 0.9
LDLR-204ENST00000545707 SLC4A3P48751 1232 aa20.65■□□□□ 0.9
LDLR-204ENST00000545707 MYOM1P52179 1685 aa20.64■□□□□ 0.9
LDLR-204ENST00000545707 TNNT2P45379 298 aaPredicted RBP20.64■□□□□ 0.89
LDLR-204ENST00000545707 CENPQQ7L2Z9 268 aaPredicted RBP20.64■□□□□ 0.89
LDLR-204ENST00000545707 ATP7AQ04656 1500 aa20.64■□□□□ 0.89
LDLR-204ENST00000545707 CLASP1Q7Z460 1538 aa20.63■□□□□ 0.89
LDLR-204ENST00000545707 ERVK-7P63135 1459 aa20.63■□□□□ 0.89
LDLR-204ENST00000545707 NEFMP07197 916 aa20.63■□□□□ 0.89
LDLR-204ENST00000545707 RGS3P49796 1198 aa20.63■□□□□ 0.89
LDLR-204ENST00000545707 TRMT2AQ8IZ69 625 aaKnown RBP20.63■□□□□ 0.89
LDLR-204ENST00000545707 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.63■□□□□ 0.89
LDLR-204ENST00000545707 TET3O43151 1660 aa20.62■□□□□ 0.89
LDLR-204ENST00000545707 NPC1L1Q9UHC9 1359 aa20.61■□□□□ 0.89
LDLR-204ENST00000545707 DEPDC5O75140 1603 aa20.61■□□□□ 0.89
LDLR-204ENST00000545707 TRAK1Q9UPV9 953 aa20.61■□□□□ 0.89
LDLR-204ENST00000545707 ADGRL1O94910 1474 aa20.6■□□□□ 0.89
LDLR-204ENST00000545707 NEUROD2Q15784 382 aa20.59■□□□□ 0.89
LDLR-204ENST00000545707 KDM5AP29375 1690 aaKnown RBP20.58■□□□□ 0.88
LDLR-204ENST00000545707 VWDEQ8N2E2 1590 aa20.57■□□□□ 0.88
LDLR-204ENST00000545707 C8orf34Q49A92 452 aa20.57■□□□□ 0.88
LDLR-204ENST00000545707 TMEM132EQ6IEE7 984 aa20.57■□□□□ 0.88
LDLR-204ENST00000545707 SLC12A5Q9H2X9 1139 aa20.57■□□□□ 0.88
LDLR-204ENST00000545707 ABCA6Q8N139 1617 aa20.56■□□□□ 0.88
LDLR-204ENST00000545707 E9PSI1 815 aa20.56■□□□□ 0.88
LDLR-204ENST00000545707 RRP7AQ9Y3A4 280 aaKnown RBP20.56■□□□□ 0.88
LDLR-204ENST00000545707 INO80Q9ULG1 1556 aaPredicted RBP20.56■□□□□ 0.88
LDLR-204ENST00000545707 NKTRP30414 1462 aaKnown RBP20.56■□□□□ 0.88
LDLR-204ENST00000545707 ARAP3Q8WWN8 1544 aa20.56■□□□□ 0.88
LDLR-204ENST00000545707 MAP3K4Q9Y6R4 1608 aa20.55■□□□□ 0.88
LDLR-204ENST00000545707 NOS1P29475 1434 aa20.54■□□□□ 0.88
LDLR-204ENST00000545707 FAM161AQ3B820 660 aa20.54■□□□□ 0.88
LDLR-204ENST00000545707 MROH1Q8NDA8 1641 aa20.54■□□□□ 0.88
LDLR-204ENST00000545707 CENPJQ9HC77 1338 aaPredicted RBP20.54■□□□□ 0.88
LDLR-204ENST00000545707 IGHDP01880 384 aa20.53■□□□□ 0.88
LDLR-204ENST00000545707 GGT6Q6P531 493 aa20.53■□□□□ 0.88
LDLR-204ENST00000545707 WWC1Q8IX03 1113 aa20.53■□□□□ 0.88
LDLR-204ENST00000545707 DDRGK1Q96HY6 314 aa20.53■□□□□ 0.88
LDLR-204ENST00000545707 NUTM2DQ5VT03 806 aaPredicted RBP20.53■□□□□ 0.88
LDLR-204ENST00000545707 MORC1Q86VD1 984 aa20.53■□□□□ 0.88
LDLR-204ENST00000545707 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
LDLR-204ENST00000545707 PANK1Q8TE04 598 aa20.52■□□□□ 0.88
LDLR-204ENST00000545707 MYOM2P54296 1465 aa20.52■□□□□ 0.87
LDLR-204ENST00000545707 ABCA9Q8IUA7 1624 aa20.52■□□□□ 0.87
LDLR-204ENST00000545707 COG6Q9Y2V7 657 aa20.51■□□□□ 0.87
LDLR-204ENST00000545707 NSD3Q9BZ95 1437 aa20.5■□□□□ 0.87
LDLR-204ENST00000545707 KIAA1210Q9ULL0 1709 aa20.5■□□□□ 0.87
LDLR-204ENST00000545707 PPM1GO15355 546 aaPredicted RBP20.49■□□□□ 0.87
LDLR-204ENST00000545707 SLC24A1O60721 1099 aa20.49■□□□□ 0.87
LDLR-204ENST00000545707 FRAT1Q92837 279 aaPredicted RBP20.49■□□□□ 0.87
LDLR-204ENST00000545707 CANXP27824 592 aaKnown RBP20.49■□□□□ 0.87
LDLR-204ENST00000545707 MROH2AA6NES4 1674 aa20.48■□□□□ 0.87
LDLR-204ENST00000545707 ASXL2Q76L83 1435 aa20.48■□□□□ 0.87
LDLR-204ENST00000545707 EFCAB6Q5THR3 1501 aa20.48■□□□□ 0.87
LDLR-204ENST00000545707 PPRC1Q5VV67 1664 aaKnown RBP20.47■□□□□ 0.87
LDLR-204ENST00000545707 POLR3AO14802 1390 aaPredicted RBP20.47■□□□□ 0.87
LDLR-204ENST00000545707 DAXXQ9UER7 740 aaPredicted RBP20.46■□□□□ 0.87
LDLR-204ENST00000545707 TCP11L2Q8N4U5 519 aa20.46■□□□□ 0.87
LDLR-204ENST00000545707 KIF1BO60333 1816 aa20.46■□□□□ 0.87
LDLR-204ENST00000545707 CFAP65Q6ZU64 1925 aaKnown RBP20.46■□□□□ 0.87
LDLR-204ENST00000545707 USP35Q9P2H5 1018 aa20.45■□□□□ 0.86
LDLR-204ENST00000545707 TNNQ9UQP3 1299 aa20.45■□□□□ 0.86
LDLR-204ENST00000545707 MTHFSP49914 203 aa20.45■□□□□ 0.86
LDLR-204ENST00000545707 BCL2L13Q9BXK5 485 aa20.45■□□□□ 0.86
LDLR-204ENST00000545707 C14orf93Q9H972 538 aaKnown RBP20.45■□□□□ 0.86
LDLR-204ENST00000545707 NRXN1Q9ULB1 1477 aa20.43■□□□□ 0.86
LDLR-204ENST00000545707 KIDINS220Q9ULH0 1771 aa20.43■□□□□ 0.86
LDLR-204ENST00000545707 SAFB2Q14151 953 aaKnown RBP eCLIP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms