RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 STRCP1A6NGW2 1772 aa13.07□□□□□ -0.32
USP28-215ENST00000545608 ANKRD50Q9ULJ7 1429 aa13.07□□□□□ -0.32
USP28-215ENST00000545608 PIK3C2BO00750 1634 aa13.07□□□□□ -0.32
USP28-215ENST00000545608 SLC52A1Q9NWF4 448 aa13.05□□□□□ -0.32
USP28-215ENST00000545608 SYNMO15061 1565 aa13.05□□□□□ -0.32
USP28-215ENST00000545608 EFCAB6Q5THR3 1501 aa13.04□□□□□ -0.32
USP28-215ENST00000545608 SLC26A8Q96RN1 970 aa13.04□□□□□ -0.32
USP28-215ENST00000545608 PPARGC1BQ86YN6 1023 aaKnown RBP13.03□□□□□ -0.32
USP28-215ENST00000545608 KCNA6P17658 529 aa13.02□□□□□ -0.33
USP28-215ENST00000545608 RPRD2Q5VT52 1461 aaKnown RBP13□□□□□ -0.33
USP28-215ENST00000545608 ITGAEP38570 1179 aa13□□□□□ -0.33
USP28-215ENST00000545608 RBM33Q96EV2 1170 aaKnown RBP13□□□□□ -0.33
USP28-215ENST00000545608 TET3O43151 1660 aa12.99□□□□□ -0.33
USP28-215ENST00000545608 ADGRB3O60242 1522 aa12.99□□□□□ -0.33
USP28-215ENST00000545608 TMEM94Q12767 1356 aa12.99□□□□□ -0.33
USP28-215ENST00000545608 ROCK1Q13464 1354 aa12.99□□□□□ -0.33
USP28-215ENST00000545608 PROSER2Q86WR7 435 aaPredicted RBP12.99□□□□□ -0.33
USP28-215ENST00000545608 BCANQ96GW7 911 aa12.99□□□□□ -0.33
USP28-215ENST00000545608 KDM5AP29375 1690 aaKnown RBP12.99□□□□□ -0.33
USP28-215ENST00000545608 MED1Q15648 1581 aaPredicted RBP12.98□□□□□ -0.33
USP28-215ENST00000545608 CHGAP10645 457 aaKnown RBP12.98□□□□□ -0.33
USP28-215ENST00000545608 ZFYVE9O95405 1425 aa12.96□□□□□ -0.33
USP28-215ENST00000545608 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.33
USP28-215ENST00000545608 HDGFP51858 240 aaKnown RBP12.96□□□□□ -0.33
USP28-215ENST00000545608 NUP155O75694 1391 aa12.95□□□□□ -0.34
USP28-215ENST00000545608 UNC13BO14795 1591 aa12.95□□□□□ -0.34
USP28-215ENST00000545608 PPP1R15AO75807 674 aaPredicted RBP12.95□□□□□ -0.34
USP28-215ENST00000545608 NUTM2DQ5VT03 806 aaPredicted RBP12.95□□□□□ -0.34
USP28-215ENST00000545608 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
USP28-215ENST00000545608 PLEKHG1Q9ULL1 1385 aa12.94□□□□□ -0.34
USP28-215ENST00000545608 FAM135BQ49AJ0 1406 aa12.94□□□□□ -0.34
USP28-215ENST00000545608 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
USP28-215ENST00000545608 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.93□□□□□ -0.34
USP28-215ENST00000545608 TBX22Q9Y458 520 aa12.93□□□□□ -0.34
USP28-215ENST00000545608 TMEM131LA2VDJ0 1609 aa12.92□□□□□ -0.34
USP28-215ENST00000545608 FKBP8Q14318 412 aa12.92□□□□□ -0.34
USP28-215ENST00000545608 E9PCH4 1651 aa12.91□□□□□ -0.34
USP28-215ENST00000545608 GCC2Q8IWJ2 1684 aa12.91□□□□□ -0.34
USP28-215ENST00000545608 NKTRP30414 1462 aaKnown RBP12.91□□□□□ -0.34
USP28-215ENST00000545608 NWD1Q149M9 1564 aa12.9□□□□□ -0.34
USP28-215ENST00000545608 IQGAP3Q86VI3 1631 aa12.9□□□□□ -0.34
USP28-215ENST00000545608 ADAMTS13Q76LX8 1427 aa12.89□□□□□ -0.35
USP28-215ENST00000545608 SLAIN2Q9P270 581 aa12.89□□□□□ -0.35
USP28-215ENST00000545608 RGS17Q9UGC6 210 aaPredicted RBP12.89□□□□□ -0.35
USP28-215ENST00000545608 MYO5BQ9ULV0 1848 aa12.89□□□□□ -0.35
USP28-215ENST00000545608 MSH6P52701 1360 aa12.89□□□□□ -0.35
USP28-215ENST00000545608 RRBP1Q9P2E9 1410 aaKnown RBP12.86□□□□□ -0.35
USP28-215ENST00000545608 AMOTL2Q9Y2J4 779 aa12.85□□□□□ -0.35
USP28-215ENST00000545608 CHD2O14647 1828 aaKnown RBP12.85□□□□□ -0.35
USP28-215ENST00000545608 PIK3R4Q99570 1358 aa12.84□□□□□ -0.35
USP28-215ENST00000545608 ROBO1Q9Y6N7 1651 aa12.84□□□□□ -0.35
USP28-215ENST00000545608 AMER1Q5JTC6 1135 aaPredicted RBP12.84□□□□□ -0.35
USP28-215ENST00000545608 C14orf37Q86TY3 774 aa12.84□□□□□ -0.35
USP28-215ENST00000545608 PTPRUQ92729 1446 aa12.84□□□□□ -0.35
USP28-215ENST00000545608 NCOA3Q9Y6Q9 1424 aa12.84□□□□□ -0.35
USP28-215ENST00000545608 NAIPQ13075 1403 aa12.83□□□□□ -0.36
USP28-215ENST00000545608 ZNF326Q5BKZ1 582 aaKnown RBP12.83□□□□□ -0.36
USP28-215ENST00000545608 C19orf44Q9H6X5 657 aa12.83□□□□□ -0.36
USP28-215ENST00000545608 U3KPZ7 1027 aaPredicted RBP12.83□□□□□ -0.36
USP28-215ENST00000545608 POTEAQ6S8J7 498 aa12.81□□□□□ -0.36
USP28-215ENST00000545608 CADPS2Q86UW7 1296 aa12.81□□□□□ -0.36
USP28-215ENST00000545608 DIP2AQ14689 1571 aa12.81□□□□□ -0.36
USP28-215ENST00000545608 ATF3P18847 181 aa12.8□□□□□ -0.36
USP28-215ENST00000545608 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
USP28-215ENST00000545608 TRPM2O94759 1503 aa12.79□□□□□ -0.36
USP28-215ENST00000545608 TRIM52Q96A61 297 aa12.79□□□□□ -0.36
USP28-215ENST00000545608 METP08581 1390 aa12.79□□□□□ -0.36
USP28-215ENST00000545608 JCADQ9P266 1359 aa12.79□□□□□ -0.36
USP28-215ENST00000545608 SPHKAPQ2M3C7 1700 aa12.77□□□□□ -0.36
USP28-215ENST00000545608 NRXN3Q9Y4C0 1643 aa12.77□□□□□ -0.37
USP28-215ENST00000545608 BRINP3Q76B58 766 aa12.76□□□□□ -0.37
USP28-215ENST00000545608 SETBP1Q9Y6X0 1596 aa12.76□□□□□ -0.37
USP28-215ENST00000545608 CLTCL1P53675 1640 aa12.76□□□□□ -0.37
USP28-215ENST00000545608 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.76□□□□□ -0.37
USP28-215ENST00000545608 HFM1A2PYH4 1435 aa12.75□□□□□ -0.37
USP28-215ENST00000545608 PHLPP1O60346 1717 aa12.75□□□□□ -0.37
USP28-215ENST00000545608 RTN4Q9NQC3 1192 aaKnown RBP12.75□□□□□ -0.37
USP28-215ENST00000545608 NEXMIFQ5QGS0 1516 aa12.74□□□□□ -0.37
USP28-215ENST00000545608 COL16A1Q07092 1604 aaPredicted RBP12.73□□□□□ -0.37
USP28-215ENST00000545608 VGFO15240 615 aaPredicted RBP12.73□□□□□ -0.37
USP28-215ENST00000545608 DCCP43146 1447 aa12.72□□□□□ -0.37
USP28-215ENST00000545608 SPATA31A6Q5VVP1 1343 aa12.72□□□□□ -0.37
USP28-215ENST00000545608 XRN1Q8IZH2 1706 aaKnown RBP12.72□□□□□ -0.37
USP28-215ENST00000545608 MST1RQ04912 1400 aa12.71□□□□□ -0.37
USP28-215ENST00000545608 LRP6O75581 1613 aa12.71□□□□□ -0.37
USP28-215ENST00000545608 AHDC1Q5TGY3 1603 aaPredicted RBP12.71□□□□□ -0.37
USP28-215ENST00000545608 RPGRIP1LQ68CZ1 1315 aa12.7□□□□□ -0.38
USP28-215ENST00000545608 DDX17Q92841 729 aaKnown RBP12.7□□□□□ -0.38
USP28-215ENST00000545608 ADGRL3Q9HAR2 1447 aa12.7□□□□□ -0.38
USP28-215ENST00000545608 MEX3CQ5U5Q3 659 aaKnown RBP12.69□□□□□ -0.38
USP28-215ENST00000545608 NUTM2BA6NNL0 878 aaPredicted RBP12.68□□□□□ -0.38
USP28-215ENST00000545608 NUTM2EB1AL46 878 aaPredicted RBP12.68□□□□□ -0.38
USP28-215ENST00000545608 NUTM2AQ8IVF1 878 aaPredicted RBP12.68□□□□□ -0.38
USP28-215ENST00000545608 ROBO2Q9HCK4 1378 aa12.68□□□□□ -0.38
USP28-215ENST00000545608 ASXL1Q8IXJ9 1541 aa12.67□□□□□ -0.38
USP28-215ENST00000545608 KIF1BO60333 1816 aa12.67□□□□□ -0.38
USP28-215ENST00000545608 MPHOSPH9Q99550 1183 aa12.67□□□□□ -0.38
USP28-215ENST00000545608 SETD5Q9C0A6 1442 aa12.66□□□□□ -0.38
USP28-215ENST00000545608 RGL3Q3MIN7 710 aa12.66□□□□□ -0.38
USP28-215ENST00000545608 ZNF772Q68DY9 489 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms