RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 MPHOSPH9Q99550 1183 aa18.4■□□□□ 0.54
VPS33A-207ENST00000542790 PTPRTO14522 1441 aa18.38■□□□□ 0.53
VPS33A-207ENST00000542790 SYNMO15061 1565 aa18.38■□□□□ 0.53
VPS33A-207ENST00000542790 E9PCH4 1651 aa18.37■□□□□ 0.53
VPS33A-207ENST00000542790 TRIM26Q12899 539 aaPredicted RBP18.36■□□□□ 0.53
VPS33A-207ENST00000542790 POLA2Q14181 598 aa18.36■□□□□ 0.53
VPS33A-207ENST00000542790 EID1Q9Y6B2 187 aa18.36■□□□□ 0.53
VPS33A-207ENST00000542790 CHGAP10645 457 aaKnown RBP18.35■□□□□ 0.53
VPS33A-207ENST00000542790 TMEM2Q9UHN6 1383 aa18.34■□□□□ 0.53
VPS33A-207ENST00000542790 TXNDC2Q86VQ3 553 aa18.34■□□□□ 0.53
VPS33A-207ENST00000542790 HDGFP51858 240 aaKnown RBP18.33■□□□□ 0.52
VPS33A-207ENST00000542790 PIK3C2BO00750 1634 aa18.32■□□□□ 0.52
VPS33A-207ENST00000542790 CFAP65Q6ZU64 1925 aaKnown RBP18.32■□□□□ 0.52
VPS33A-207ENST00000542790 STRCQ7RTU9 1775 aa18.32■□□□□ 0.52
VPS33A-207ENST00000542790 LTKP29376 864 aa18.31■□□□□ 0.52
VPS33A-207ENST00000542790 ARHGAP23Q9P227 1491 aa18.31■□□□□ 0.52
VPS33A-207ENST00000542790 ADGRB3O60242 1522 aa18.3■□□□□ 0.52
VPS33A-207ENST00000542790 SLIT1O75093 1534 aa18.3■□□□□ 0.52
VPS33A-207ENST00000542790 UBR1Q8IWV7 1749 aa18.29■□□□□ 0.52
VPS33A-207ENST00000542790 MED14O60244 1454 aa18.28■□□□□ 0.52
VPS33A-207ENST00000542790 SCAF11Q99590 1463 aaKnown RBP18.28■□□□□ 0.52
VPS33A-207ENST00000542790 NPHP4O75161 1426 aaPredicted RBP18.28■□□□□ 0.52
VPS33A-207ENST00000542790 TRPM2O94759 1503 aa18.28■□□□□ 0.52
VPS33A-207ENST00000542790 KDM5AP29375 1690 aaKnown RBP18.28■□□□□ 0.52
VPS33A-207ENST00000542790 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.27■□□□□ 0.52
VPS33A-207ENST00000542790 PPP1R15AO75807 674 aaPredicted RBP18.25■□□□□ 0.51
VPS33A-207ENST00000542790 ZNF326Q5BKZ1 582 aaKnown RBP18.25■□□□□ 0.51
VPS33A-207ENST00000542790 RIMS2Q9UQ26 1411 aa18.24■□□□□ 0.51
VPS33A-207ENST00000542790 CCDC144AA2RUR9 1427 aa18.23■□□□□ 0.51
VPS33A-207ENST00000542790 TMEM131LA2VDJ0 1609 aa18.23■□□□□ 0.51
VPS33A-207ENST00000542790 SPHKAPQ2M3C7 1700 aa18.23■□□□□ 0.51
VPS33A-207ENST00000542790 NEURL4Q96JN8 1562 aa18.23■□□□□ 0.51
VPS33A-207ENST00000542790 ZFYVE9O95405 1425 aa18.23■□□□□ 0.51
VPS33A-207ENST00000542790 BCANQ96GW7 911 aa18.22■□□□□ 0.51
VPS33A-207ENST00000542790 ZNF335Q9H4Z2 1342 aaPredicted RBP18.2■□□□□ 0.5
VPS33A-207ENST00000542790 NUTM2DQ5VT03 806 aaPredicted RBP18.19■□□□□ 0.5
VPS33A-207ENST00000542790 CLTCL1P53675 1640 aa18.19■□□□□ 0.5
VPS33A-207ENST00000542790 RPGRIP1LQ68CZ1 1315 aa18.19■□□□□ 0.5
VPS33A-207ENST00000542790 PLEKHG1Q9ULL1 1385 aa18.18■□□□□ 0.5
VPS33A-207ENST00000542790 POLR1AO95602 1720 aaPredicted RBP18.18■□□□□ 0.5
VPS33A-207ENST00000542790 ANKRD30BQ9BXX2 1392 aa18.17■□□□□ 0.5
VPS33A-207ENST00000542790 CERKQ8TCT0 537 aa18.17■□□□□ 0.5
VPS33A-207ENST00000542790 SLC26A8Q96RN1 970 aa18.17■□□□□ 0.5
VPS33A-207ENST00000542790 VGFO15240 615 aaPredicted RBP18.16■□□□□ 0.5
VPS33A-207ENST00000542790 RGL3Q3MIN7 710 aa18.15■□□□□ 0.5
VPS33A-207ENST00000542790 IQGAP1P46940 1657 aa18.15■□□□□ 0.5
VPS33A-207ENST00000542790 TBX22Q9Y458 520 aa18.14■□□□□ 0.49
VPS33A-207ENST00000542790 SPATA31E1Q6ZUB1 1445 aa18.12■□□□□ 0.49
VPS33A-207ENST00000542790 LTBP4Q8N2S1 1624 aa18.12■□□□□ 0.49
VPS33A-207ENST00000542790 KCNA6P17658 529 aa18.1■□□□□ 0.49
VPS33A-207ENST00000542790 NEXMIFQ5QGS0 1516 aa18.08■□□□□ 0.49
VPS33A-207ENST00000542790 PCGF6Q9BYE7 350 aa18.08■□□□□ 0.48
VPS33A-207ENST00000542790 CPS1P31327 1500 aa18.08■□□□□ 0.48
VPS33A-207ENST00000542790 ADAMTS13Q76LX8 1427 aa18.07■□□□□ 0.48
VPS33A-207ENST00000542790 KIF1BO60333 1816 aa18.07■□□□□ 0.48
VPS33A-207ENST00000542790 MYO5BQ9ULV0 1848 aa18.07■□□□□ 0.48
VPS33A-207ENST00000542790 PIK3R4Q99570 1358 aa18.05■□□□□ 0.48
VPS33A-207ENST00000542790 DHX57Q6P158 1386 aaKnown RBP18.04■□□□□ 0.48
VPS33A-207ENST00000542790 ADGRF5Q8IZF2 1346 aa18.03■□□□□ 0.48
VPS33A-207ENST00000542790 IQSEC2Q5JU85 1478 aa18.03■□□□□ 0.48
VPS33A-207ENST00000542790 FBXO41Q8TF61 875 aa18.03■□□□□ 0.48
VPS33A-207ENST00000542790 STAC3Q96MF2 364 aa18.03■□□□□ 0.48
VPS33A-207ENST00000542790 SETBP1Q9Y6X0 1596 aa18.02■□□□□ 0.48
VPS33A-207ENST00000542790 DIP2AQ14689 1571 aa18.01■□□□□ 0.47
VPS33A-207ENST00000542790 PROSER2Q86WR7 435 aaPredicted RBP18.01■□□□□ 0.47
VPS33A-207ENST00000542790 AMOTL2Q9Y2J4 779 aa18.01■□□□□ 0.47
VPS33A-207ENST00000542790 DCAF11Q8TEB1 546 aa18■□□□□ 0.47
VPS33A-207ENST00000542790 LRRC7Q96NW7 1537 aa17.99■□□□□ 0.47
VPS33A-207ENST00000542790 METP08581 1390 aa17.99■□□□□ 0.47
VPS33A-207ENST00000542790 NKTRP30414 1462 aaKnown RBP17.97■□□□□ 0.47
VPS33A-207ENST00000542790 KDM2AQ9Y2K7 1162 aa17.97■□□□□ 0.47
VPS33A-207ENST00000542790 TMEM94Q12767 1356 aa17.96■□□□□ 0.47
VPS33A-207ENST00000542790 SIN3AQ96ST3 1273 aa17.96■□□□□ 0.47
VPS33A-207ENST00000542790 MYOM2P54296 1465 aa17.95■□□□□ 0.46
VPS33A-207ENST00000542790 NRXN3Q9Y4C0 1643 aa17.95■□□□□ 0.46
VPS33A-207ENST00000542790 UBAP1LF5GYI3 381 aa17.95■□□□□ 0.46
VPS33A-207ENST00000542790 TOM1O60784 492 aa17.95■□□□□ 0.46
VPS33A-207ENST00000542790 NEUROD1Q13562 356 aa17.95■□□□□ 0.46
VPS33A-207ENST00000542790 ILDR1Q86SU0 546 aaPredicted RBP17.95■□□□□ 0.46
VPS33A-207ENST00000542790 C14orf93Q9H972 538 aaKnown RBP17.95■□□□□ 0.46
VPS33A-207ENST00000542790 PIK3C2GO75747 1445 aa17.95■□□□□ 0.46
VPS33A-207ENST00000542790 PPLO60437 1756 aa17.94■□□□□ 0.46
VPS33A-207ENST00000542790 RBM33Q96EV2 1170 aaKnown RBP17.94■□□□□ 0.46
VPS33A-207ENST00000542790 PTPRUQ92729 1446 aa17.94■□□□□ 0.46
VPS33A-207ENST00000542790 NWD1Q149M9 1564 aa17.94■□□□□ 0.46
VPS33A-207ENST00000542790 ALKQ9UM73 1620 aa17.93■□□□□ 0.46
VPS33A-207ENST00000542790 NRXN1Q9ULB1 1477 aa17.93■□□□□ 0.46
VPS33A-207ENST00000542790 CFAP70Q5T0N1 1121 aa17.92■□□□□ 0.46
VPS33A-207ENST00000542790 STRCP1A6NGW2 1772 aa17.91■□□□□ 0.46
VPS33A-207ENST00000542790 NCOA3Q9Y6Q9 1424 aa17.91■□□□□ 0.46
VPS33A-207ENST00000542790 C14orf37Q86TY3 774 aa17.91■□□□□ 0.46
VPS33A-207ENST00000542790 TMEM132EQ6IEE7 984 aa17.9■□□□□ 0.46
VPS33A-207ENST00000542790 ZBTB12Q9Y330 459 aaPredicted RBP17.9■□□□□ 0.46
VPS33A-207ENST00000542790 L3MBTL2Q969R5 705 aa17.89■□□□□ 0.45
VPS33A-207ENST00000542790 C19orf44Q9H6X5 657 aa17.88■□□□□ 0.45
VPS33A-207ENST00000542790 IFT172Q9UG01 1749 aa17.88■□□□□ 0.45
VPS33A-207ENST00000542790 CHD2O14647 1828 aaKnown RBP17.88■□□□□ 0.45
VPS33A-207ENST00000542790 MSH6P52701 1360 aa17.88■□□□□ 0.45
VPS33A-207ENST00000542790 STK26Q9P289 416 aa17.87■□□□□ 0.45
VPS33A-207ENST00000542790 LRPPRCP42704 1394 aaKnown RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms