RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 MBD5Q9P267 1494 aa12.91□□□□□ -0.34
CHMP4A-209ENST00000542700 BRINP3Q76B58 766 aa12.9□□□□□ -0.34
CHMP4A-209ENST00000542700 USP21Q9UK80 565 aa12.9□□□□□ -0.34
CHMP4A-209ENST00000542700 TRPC5Q9UL62 973 aaPredicted RBP12.9□□□□□ -0.34
CHMP4A-209ENST00000542700 SETD5Q9C0A6 1442 aa12.89□□□□□ -0.35
CHMP4A-209ENST00000542700 PIK3C2BO00750 1634 aa12.89□□□□□ -0.35
CHMP4A-209ENST00000542700 CFAP65Q6ZU64 1925 aaKnown RBP12.88□□□□□ -0.35
CHMP4A-209ENST00000542700 CADPS2Q86UW7 1296 aa12.88□□□□□ -0.35
CHMP4A-209ENST00000542700 BCANQ96GW7 911 aa12.88□□□□□ -0.35
CHMP4A-209ENST00000542700 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
CHMP4A-209ENST00000542700 PNPLA6Q8IY17 1366 aa12.88□□□□□ -0.35
CHMP4A-209ENST00000542700 CAMSAP2Q08AD1 1489 aa12.88□□□□□ -0.35
CHMP4A-209ENST00000542700 BCL9LQ86UU0 1499 aa12.87□□□□□ -0.35
CHMP4A-209ENST00000542700 ATF3P18847 181 aa12.87□□□□□ -0.35
CHMP4A-209ENST00000542700 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.86□□□□□ -0.35
CHMP4A-209ENST00000542700 EHMT2Q96KQ7 1210 aa12.86□□□□□ -0.35
CHMP4A-209ENST00000542700 ASXL1Q8IXJ9 1541 aa12.86□□□□□ -0.35
CHMP4A-209ENST00000542700 ATRNO75882 1429 aa12.86□□□□□ -0.35
CHMP4A-209ENST00000542700 CEP152O94986 1710 aa12.85□□□□□ -0.35
CHMP4A-209ENST00000542700 EFCAB6Q5THR3 1501 aa12.85□□□□□ -0.35
CHMP4A-209ENST00000542700 SF3B2Q13435 895 aaKnown RBP12.85□□□□□ -0.35
CHMP4A-209ENST00000542700 CASKIN1Q8WXD9 1431 aa12.85□□□□□ -0.35
CHMP4A-209ENST00000542700 LRRC59Q96AG4 307 aaKnown RBP12.84□□□□□ -0.35
CHMP4A-209ENST00000542700 NCOA3Q9Y6Q9 1424 aa12.84□□□□□ -0.35
CHMP4A-209ENST00000542700 MROH1Q8NDA8 1641 aa12.83□□□□□ -0.36
CHMP4A-209ENST00000542700 CCDC141Q6ZP82 1450 aa12.83□□□□□ -0.36
CHMP4A-209ENST00000542700 EEA1Q15075 1411 aa12.82□□□□□ -0.36
CHMP4A-209ENST00000542700 C19orf44Q9H6X5 657 aa12.82□□□□□ -0.36
CHMP4A-209ENST00000542700 CHD2O14647 1828 aaKnown RBP12.81□□□□□ -0.36
CHMP4A-209ENST00000542700 DDX17Q92841 729 aaKnown RBP12.81□□□□□ -0.36
CHMP4A-209ENST00000542700 UBTFP17480 764 aaKnown RBP12.8□□□□□ -0.36
CHMP4A-209ENST00000542700 FNBP4Q8N3X1 1017 aaPredicted RBP12.79□□□□□ -0.36
CHMP4A-209ENST00000542700 UNC13BO14795 1591 aa12.77□□□□□ -0.36
CHMP4A-209ENST00000542700 R3HDM1Q15032 1099 aaKnown RBP12.77□□□□□ -0.37
CHMP4A-209ENST00000542700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.76□□□□□ -0.371e-7■■■■□ 21.7
CHMP4A-209ENST00000542700 FYCO1Q9BQS8 1478 aa12.76□□□□□ -0.37
CHMP4A-209ENST00000542700 PTCH1Q13635 1447 aa12.75□□□□□ -0.37
CHMP4A-209ENST00000542700 ARHGAP31Q2M1Z3 1444 aa12.75□□□□□ -0.37
CHMP4A-209ENST00000542700 ZNF784Q8NCA9 323 aaPredicted RBP12.75□□□□□ -0.37
CHMP4A-209ENST00000542700 GJD4Q96KN9 370 aaPredicted RBP12.75□□□□□ -0.37
CHMP4A-209ENST00000542700 EIF2AK4Q9P2K8 1649 aaKnown RBP12.74□□□□□ -0.37
CHMP4A-209ENST00000542700 ADGRB3O60242 1522 aa12.74□□□□□ -0.37
CHMP4A-209ENST00000542700 MST1RQ04912 1400 aa12.74□□□□□ -0.37
CHMP4A-209ENST00000542700 C1QTNF8P60827 252 aa12.74□□□□□ -0.37
CHMP4A-209ENST00000542700 IDI1Q13907 227 aa12.74□□□□□ -0.37
CHMP4A-209ENST00000542700 PLEKHG1Q9ULL1 1385 aa12.73□□□□□ -0.37
CHMP4A-209ENST00000542700 DCAF8L1A6NGE4 600 aa12.73□□□□□ -0.37
CHMP4A-209ENST00000542700 BAG6P46379 1132 aa12.73□□□□□ -0.37
CHMP4A-209ENST00000542700 DCCP43146 1447 aa12.72□□□□□ -0.37
CHMP4A-209ENST00000542700 MTUS2Q5JR59 1369 aa12.72□□□□□ -0.37
CHMP4A-209ENST00000542700 PPP1R15AO75807 674 aaPredicted RBP12.72□□□□□ -0.37
CHMP4A-209ENST00000542700 BRWD3Q6RI45 1802 aa12.71□□□□□ -0.38
CHMP4A-209ENST00000542700 SPHKAPQ2M3C7 1700 aa12.7□□□□□ -0.38
CHMP4A-209ENST00000542700 RALGAPBQ86X10 1494 aa12.7□□□□□ -0.38
CHMP4A-209ENST00000542700 GLI3P10071 1580 aa12.69□□□□□ -0.38
CHMP4A-209ENST00000542700 TSPY4P0CV99 314 aa12.69□□□□□ -0.38
CHMP4A-209ENST00000542700 TSPY10P0CW01 314 aa12.69□□□□□ -0.38
CHMP4A-209ENST00000542700 RSPH4AQ5TD94 716 aa12.68□□□□□ -0.38
CHMP4A-209ENST00000542700 TBX22Q9Y458 520 aa12.68□□□□□ -0.38
CHMP4A-209ENST00000542700 ZFYVE9O95405 1425 aa12.68□□□□□ -0.38
CHMP4A-209ENST00000542700 ARHGEF5Q12774 1597 aa12.66□□□□□ -0.38
CHMP4A-209ENST00000542700 EN1Q05925 392 aaPredicted RBP12.66□□□□□ -0.38
CHMP4A-209ENST00000542700 SEPT12Q8IYM1 358 aa12.66□□□□□ -0.38
CHMP4A-209ENST00000542700 RIMS2Q9UQ26 1411 aa12.65□□□□□ -0.38
CHMP4A-209ENST00000542700 CAMTA1Q9Y6Y1 1673 aa12.65□□□□□ -0.38
CHMP4A-209ENST00000542700 PPP1R1BQ9UD71 204 aaPredicted RBP12.65□□□□□ -0.38
CHMP4A-209ENST00000542700 TRPM2O94759 1503 aa12.65□□□□□ -0.38
CHMP4A-209ENST00000542700 ADAMTS13Q76LX8 1427 aa12.64□□□□□ -0.39
CHMP4A-209ENST00000542700 EHBP1L1Q8N3D4 1523 aa12.64□□□□□ -0.39
CHMP4A-209ENST00000542700 AMOTL2Q9Y2J4 779 aa12.64□□□□□ -0.39
CHMP4A-209ENST00000542700 MYOM2P54296 1465 aa12.64□□□□□ -0.39
CHMP4A-209ENST00000542700 COL22A1Q8NFW1 1626 aaPredicted RBP12.63□□□□□ -0.39
CHMP4A-209ENST00000542700 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.63□□□□□ -0.39
CHMP4A-209ENST00000542700 KRT27Q7Z3Y8 459 aa12.63□□□□□ -0.39
CHMP4A-209ENST00000542700 PIK3R4Q99570 1358 aa12.63□□□□□ -0.39
CHMP4A-209ENST00000542700 PTPRUQ92729 1446 aa12.62□□□□□ -0.39
CHMP4A-209ENST00000542700 SOS2Q07890 1332 aaPredicted RBP12.62□□□□□ -0.39
CHMP4A-209ENST00000542700 NINLQ9Y2I6 1382 aa12.61□□□□□ -0.39
CHMP4A-209ENST00000542700 CEP162Q5TB80 1403 aa12.61□□□□□ -0.39
CHMP4A-209ENST00000542700 MARF1Q9Y4F3 1742 aaKnown RBP12.6□□□□□ -0.39
CHMP4A-209ENST00000542700 LAMC1P11047 1609 aa12.6□□□□□ -0.39
CHMP4A-209ENST00000542700 UNC5CLQ8IV45 518 aa12.6□□□□□ -0.39
CHMP4A-209ENST00000542700 NOS1P29475 1434 aa12.6□□□□□ -0.39
CHMP4A-209ENST00000542700 MYO5BQ9ULV0 1848 aa12.6□□□□□ -0.39
CHMP4A-209ENST00000542700 DUOX2Q9NRD8 1548 aa12.59□□□□□ -0.39
CHMP4A-209ENST00000542700 HDGFP51858 240 aaKnown RBP12.59□□□□□ -0.39
CHMP4A-209ENST00000542700 C1orf167Q5SNV9 1468 aa12.59□□□□□ -0.39
CHMP4A-209ENST00000542700 GCC2Q8IWJ2 1684 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 KANK1Q14678 1352 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 RGPD1P0DJD0 1748 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 ADGRL3Q9HAR2 1447 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 A0A0G2JS52 829 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 MYT1Q01538 1121 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 EZH2Q15910 746 aaKnown RBP12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 SLC52A1Q9NWF4 448 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 SLIT2O94813 1529 aa12.57□□□□□ -0.4
CHMP4A-209ENST00000542700 ORAI2Q96SN7 254 aa12.56□□□□□ -0.4
CHMP4A-209ENST00000542700 XRN1Q8IZH2 1706 aaKnown RBP12.56□□□□□ -0.4
CHMP4A-209ENST00000542700 RPRD2Q5VT52 1461 aaKnown RBP12.55□□□□□ -0.4
CHMP4A-209ENST00000542700 NALCNQ8IZF0 1738 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms