RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 NECTIN2Q92692 538 aa20.36■□□□□ 0.85
VARS2-212ENST00000542001 TRHP20396 242 aaPredicted RBP20.36■□□□□ 0.85
VARS2-212ENST00000542001 ANKRD45Q5TZF3 282 aa20.36■□□□□ 0.85
VARS2-212ENST00000542001 ZKSCAN2Q63HK3 967 aa20.35■□□□□ 0.85
VARS2-212ENST00000542001 LNPKQ9C0E8 428 aa20.34■□□□□ 0.85
VARS2-212ENST00000542001 FOXD4L5Q5VV16 416 aaPredicted RBP20.34■□□□□ 0.85
VARS2-212ENST00000542001 FOXD4L4Q8WXT5 416 aaPredicted RBP20.34■□□□□ 0.85
VARS2-212ENST00000542001 GOLGA6L22H0YM25 854 aa20.33■□□□□ 0.85
VARS2-212ENST00000542001 RUNDC1Q96C34 613 aa20.33■□□□□ 0.85
VARS2-212ENST00000542001 BACH2Q9BYV9 841 aa20.33■□□□□ 0.85
VARS2-212ENST00000542001 PNNQ9H307 717 aaKnown RBP20.33■□□□□ 0.85
VARS2-212ENST00000542001 CUL7Q14999 1698 aa20.33■□□□□ 0.85
VARS2-212ENST00000542001 ERBINQ96RT1 1412 aa20.33■□□□□ 0.84
VARS2-212ENST00000542001 GRIN2AQ12879 1464 aa20.33■□□□□ 0.84
VARS2-212ENST00000542001 RTF1Q92541 710 aaKnown RBP20.32■□□□□ 0.84
VARS2-212ENST00000542001 PLCB2Q00722 1185 aa20.32■□□□□ 0.84
VARS2-212ENST00000542001 MAGI1Q96QZ7 1491 aaPredicted RBP20.32■□□□□ 0.84
VARS2-212ENST00000542001 OS9Q13438 667 aaPredicted RBP20.32■□□□□ 0.84
VARS2-212ENST00000542001 NAP1L5Q96NT1 182 aaPredicted RBP20.31■□□□□ 0.84
VARS2-212ENST00000542001 DISP3Q9P2K9 1392 aa20.31■□□□□ 0.84
VARS2-212ENST00000542001 LAMC3Q9Y6N6 1575 aa20.3■□□□□ 0.84
VARS2-212ENST00000542001 DZIP1LQ8IYY4 767 aaKnown RBP20.3■□□□□ 0.84
VARS2-212ENST00000542001 GPATCH8Q9UKJ3 1502 aaKnown RBP20.3■□□□□ 0.84
VARS2-212ENST00000542001 NFKBIBQ15653 356 aa20.3■□□□□ 0.84
VARS2-212ENST00000542001 OSCARQ8IYS5 282 aa20.3■□□□□ 0.84
VARS2-212ENST00000542001 ADGRF5Q8IZF2 1346 aa20.29■□□□□ 0.84
VARS2-212ENST00000542001 DIAPH1O60610 1272 aaKnown RBP20.29■□□□□ 0.84
VARS2-212ENST00000542001 EXOSC9Q06265 439 aaKnown RBP20.29■□□□□ 0.84
VARS2-212ENST00000542001 PLEKHH2Q8IVE3 1493 aa20.29■□□□□ 0.84
VARS2-212ENST00000542001 C1orf115Q9H7X2 142 aa20.28■□□□□ 0.84
VARS2-212ENST00000542001 FOXD4L6Q3SYB3 417 aaPredicted RBP20.28■□□□□ 0.84
VARS2-212ENST00000542001 FOXD4L3Q6VB84 417 aaPredicted RBP20.28■□□□□ 0.84
VARS2-212ENST00000542001 NGDNQ8NEJ9 315 aaKnown RBP20.27■□□□□ 0.84
VARS2-212ENST00000542001 FRAT2O75474 233 aaPredicted RBP20.27■□□□□ 0.84
VARS2-212ENST00000542001 FBLN1P23142 703 aa20.27■□□□□ 0.84
VARS2-212ENST00000542001 CASC1Q6TDU7 716 aa20.27■□□□□ 0.84
VARS2-212ENST00000542001 NUP153P49790 1475 aaKnown RBP20.27■□□□□ 0.84
VARS2-212ENST00000542001 UGGT2Q9NYU1 1516 aa20.27■□□□□ 0.84
VARS2-212ENST00000542001 NUTM2GQ5VZR2 741 aa20.27■□□□□ 0.83
VARS2-212ENST00000542001 PRAM1Q96QH2 718 aa20.27■□□□□ 0.83
VARS2-212ENST00000542001 IL27Q8NEV9 243 aa20.26■□□□□ 0.83
VARS2-212ENST00000542001 GSE1Q14687 1217 aa20.25■□□□□ 0.83
VARS2-212ENST00000542001 FAM69CQ0P6D2 419 aa20.24■□□□□ 0.83
VARS2-212ENST00000542001 THUMPD2Q9BTF0 503 aaKnown RBP20.24■□□□□ 0.83
VARS2-212ENST00000542001 ZNF428Q96B54 188 aa20.23■□□□□ 0.83
VARS2-212ENST00000542001 AMPHP49418 695 aa20.22■□□□□ 0.83
VARS2-212ENST00000542001 ANO8Q9HCE9 1232 aaPredicted RBP20.22■□□□□ 0.83
VARS2-212ENST00000542001 PDZRN3Q9UPQ7 1066 aa20.22■□□□□ 0.83
VARS2-212ENST00000542001 CABP1Q9NZU7 370 aa20.22■□□□□ 0.83
VARS2-212ENST00000542001 BRPF3Q9ULD4 1205 aa20.21■□□□□ 0.83
VARS2-212ENST00000542001 TRIM6-TRIM34B2RNG4 842 aa20.2■□□□□ 0.82
VARS2-212ENST00000542001 PRKAR2BP31323 418 aa20.2■□□□□ 0.82
VARS2-212ENST00000542001 COG3Q96JB2 828 aa20.2■□□□□ 0.82
VARS2-212ENST00000542001 PTMAP06454 111 aaKnown RBP20.2■□□□□ 0.82
VARS2-212ENST00000542001 KCNJ4P48050 445 aa20.2■□□□□ 0.82
VARS2-212ENST00000542001 SLFN5Q08AF3 891 aa20.2■□□□□ 0.82
VARS2-212ENST00000542001 WWC1Q8IX03 1113 aa20.19■□□□□ 0.82
VARS2-212ENST00000542001 HAP1P54257 671 aaPredicted RBP20.19■□□□□ 0.82
VARS2-212ENST00000542001 CCDC141Q6ZP82 1450 aa20.18■□□□□ 0.82
VARS2-212ENST00000542001 TXNDC2Q86VQ3 553 aa20.18■□□□□ 0.82
VARS2-212ENST00000542001 CHMP4BQ9H444 224 aaKnown RBP20.17■□□□□ 0.82
VARS2-212ENST00000542001 DUSP27Q5VZP5 1158 aa20.17■□□□□ 0.82
VARS2-212ENST00000542001 ATP10BO94823 1461 aa20.17■□□□□ 0.82
VARS2-212ENST00000542001 MAGI3Q5TCQ9 1506 aa20.17■□□□□ 0.82
VARS2-212ENST00000542001 HDGFP51858 240 aaKnown RBP20.16■□□□□ 0.82
VARS2-212ENST00000542001 NAP1L2Q9ULW6 460 aaPredicted RBP20.16■□□□□ 0.82
VARS2-212ENST00000542001 PRKCSHP14314 528 aaPredicted RBP20.14■□□□□ 0.82
VARS2-212ENST00000542001 ARID3AQ99856 593 aa20.14■□□□□ 0.82
VARS2-212ENST00000542001 TESK2Q96S53 571 aa20.14■□□□□ 0.81
VARS2-212ENST00000542001 NOB1Q9ULX3 412 aaKnown RBP20.14■□□□□ 0.81
VARS2-212ENST00000542001 DDX19BQ9UMR2 479 aa20.14■□□□□ 0.81
VARS2-212ENST00000542001 WAPLQ7Z5K2 1190 aa20.14■□□□□ 0.81
VARS2-212ENST00000542001 STK31Q9BXU1 1019 aa20.14■□□□□ 0.81
VARS2-212ENST00000542001 TNNQ9UQP3 1299 aa20.14■□□□□ 0.81
VARS2-212ENST00000542001 ZNF330Q9Y3S2 320 aaPredicted RBP20.14■□□□□ 0.81
VARS2-212ENST00000542001 CALD1Q05682 793 aaKnown RBP20.13■□□□□ 0.81
VARS2-212ENST00000542001 DHX29Q7Z478 1369 aaKnown RBP20.13■□□□□ 0.81
VARS2-212ENST00000542001 RRS1Q15050 365 aaKnown RBP20.12■□□□□ 0.81
VARS2-212ENST00000542001 EIF2S2P20042 333 aaKnown RBP20.12■□□□□ 0.81
VARS2-212ENST00000542001 CCDC9Q9Y3X0 531 aaKnown RBP20.12■□□□□ 0.81
VARS2-212ENST00000542001 RILPL2Q969X0 211 aa20.12■□□□□ 0.81
VARS2-212ENST00000542001 USP35Q9P2H5 1018 aa20.11■□□□□ 0.81
VARS2-212ENST00000542001 NSD3Q9BZ95 1437 aa20.11■□□□□ 0.81
VARS2-212ENST00000542001 C22orf23Q9BZE7 217 aa20.11■□□□□ 0.81
VARS2-212ENST00000542001 SPINK5Q9NQ38 1064 aaPredicted RBP20.11■□□□□ 0.81
VARS2-212ENST00000542001 DNTTIP2Q5QJE6 756 aaKnown RBP20.11■□□□□ 0.81
VARS2-212ENST00000542001 FBXO31Q5XUX0 539 aaPredicted RBP20.11■□□□□ 0.81
VARS2-212ENST00000542001 GOLGA6L3A6NEY3 463 aa20.1■□□□□ 0.81
VARS2-212ENST00000542001 CDK19Q9BWU1 502 aa20.1■□□□□ 0.81
VARS2-212ENST00000542001 DCTN1Q14203 1278 aa20.09■□□□□ 0.81
VARS2-212ENST00000542001 IGHDP01880 384 aa20.09■□□□□ 0.81
VARS2-212ENST00000542001 PER1O15534 1290 aaPredicted RBP20.09■□□□□ 0.81
VARS2-212ENST00000542001 CFAP43Q8NDM7 1665 aa20.08■□□□□ 0.81
VARS2-212ENST00000542001 AMER1Q5JTC6 1135 aaPredicted RBP20.08■□□□□ 0.8
VARS2-212ENST00000542001 FGD1P98174 961 aa20.07■□□□□ 0.8
VARS2-212ENST00000542001 L1TD1Q5T7N2 865 aaKnown RBP20.07■□□□□ 0.8
VARS2-212ENST00000542001 KDM6BO15054 1643 aa20.07■□□□□ 0.8
VARS2-212ENST00000542001 PZPP20742 1482 aa20.06■□□□□ 0.8
VARS2-212ENST00000542001 GBP4Q96PP9 640 aa20.06■□□□□ 0.8
VARS2-212ENST00000542001 NGEFQ8N5V2 710 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms