RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 EYA1Q99502 592 aa9.75□□□□□ -0.85
PRKDC-209ENST00000540819 PPP1R18Q6NYC8 613 aa9.74□□□□□ -0.85
PRKDC-209ENST00000540819 ZNF516Q92618 1163 aa9.74□□□□□ -0.85
PRKDC-209ENST00000540819 PRR14Q9BWN1 585 aa9.74□□□□□ -0.85
PRKDC-209ENST00000540819 GGCXP38435 758 aa9.73□□□□□ -0.85
PRKDC-209ENST00000540819 PTGDRQ13258 359 aa9.73□□□□□ -0.85
PRKDC-209ENST00000540819 LAPTM4AQ15012 233 aa9.73□□□□□ -0.85
PRKDC-209ENST00000540819 RBM46Q8TBY0 533 aaKnown RBP9.73□□□□□ -0.85
PRKDC-209ENST00000540819 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.73□□□□□ -0.85
PRKDC-209ENST00000540819 COPS2P61201 443 aa9.72□□□□□ -0.85
PRKDC-209ENST00000540819 PRKD2Q9BZL6 878 aa9.72□□□□□ -0.85
PRKDC-209ENST00000540819 DNAJB2P25686 324 aa9.71□□□□□ -0.86
PRKDC-209ENST00000540819 GFRA3O60609 400 aa9.7□□□□□ -0.86
PRKDC-209ENST00000540819 PODXL2Q9NZ53 605 aa9.7□□□□□ -0.86
PRKDC-209ENST00000540819 NKX2-3Q8TAU0 364 aa9.68□□□□□ -0.86
PRKDC-209ENST00000540819 PCDHB3Q9Y5E6 796 aa9.68□□□□□ -0.86
PRKDC-209ENST00000540819 FCHSD2O94868 740 aa9.67□□□□□ -0.86
PRKDC-209ENST00000540819 V9GY48 417 aaPredicted RBP9.67□□□□□ -0.86
PRKDC-209ENST00000540819 ZPR1O75312 459 aa9.66□□□□□ -0.86
PRKDC-209ENST00000540819 ADGRG1Q9Y653 693 aa9.66□□□□□ -0.86
PRKDC-209ENST00000540819 RCCD1A6NED2 376 aa9.65□□□□□ -0.86
PRKDC-209ENST00000540819 SEMA3EO15041 775 aa9.65□□□□□ -0.86
PRKDC-209ENST00000540819 KMT5BQ4FZB7 885 aa9.65□□□□□ -0.86
PRKDC-209ENST00000540819 TMUB1Q9BVT8 246 aa9.65□□□□□ -0.86
PRKDC-209ENST00000540819 TMEM134Q9H6X4 195 aa9.65□□□□□ -0.86
PRKDC-209ENST00000540819 SMYD5Q6GMV2 418 aa9.64□□□□□ -0.87
PRKDC-209ENST00000540819 OATP04181 439 aa9.62□□□□□ -0.87
PRKDC-209ENST00000540819 FAM161AQ3B820 660 aa9.62□□□□□ -0.87
PRKDC-209ENST00000540819 RSPH4AQ5TD94 716 aa9.61□□□□□ -0.87
PRKDC-209ENST00000540819 TRAF7Q6Q0C0 670 aa9.61□□□□□ -0.87
PRKDC-209ENST00000540819 BLOC1S3Q6QNY0 202 aa9.61□□□□□ -0.87
PRKDC-209ENST00000540819 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.6□□□□□ -0.87
PRKDC-209ENST00000540819 NRG2O14511 850 aaPredicted RBP9.6□□□□□ -0.87
PRKDC-209ENST00000540819 ACTN4O43707 911 aaKnown RBP9.6□□□□□ -0.87
PRKDC-209ENST00000540819 CFHP08603 1231 aa9.58□□□□□ -0.88
PRKDC-209ENST00000540819 HIC1Q14526 733 aa9.58□□□□□ -0.88
PRKDC-209ENST00000540819 PDZRN3Q9UPQ7 1066 aa9.57□□□□□ -0.88
PRKDC-209ENST00000540819 SUPT5HO00267 1087 aaKnown RBP9.56□□□□□ -0.88
PRKDC-209ENST00000540819 NR1I2O75469 434 aa9.55□□□□□ -0.88
PRKDC-209ENST00000540819 RBM26Q5T8P6 1007 aaKnown RBP9.55□□□□□ -0.88
PRKDC-209ENST00000540819 PXYLP1Q8TE99 480 aa9.55□□□□□ -0.88
PRKDC-209ENST00000540819 TESPA1A2RU30 521 aaPredicted RBP9.54□□□□□ -0.88
PRKDC-209ENST00000540819 RNF223E7ERA6 249 aa9.54□□□□□ -0.88
PRKDC-209ENST00000540819 SLC10A3P09131 477 aa9.54□□□□□ -0.88
PRKDC-209ENST00000540819 SLC19A1P41440 591 aa9.54□□□□□ -0.88
PRKDC-209ENST00000540819 GNPATO15228 680 aa9.52□□□□□ -0.89
PRKDC-209ENST00000540819 TLL1O43897 1013 aa9.51□□□□□ -0.89
PRKDC-209ENST00000540819 METTL3Q86U44 580 aaKnown RBP9.51□□□□□ -0.89
PRKDC-209ENST00000540819 ANKLE1Q8NAG6 615 aa9.51□□□□□ -0.89
PRKDC-209ENST00000540819 S1PR4O95977 384 aa9.5□□□□□ -0.89
PRKDC-209ENST00000540819 PPEF1O14829 653 aaPredicted RBP9.49□□□□□ -0.89
PRKDC-209ENST00000540819 ADH1BP00325 375 aa9.49□□□□□ -0.89
PRKDC-209ENST00000540819 SCUBE3Q8IX30 993 aa9.49□□□□□ -0.89
PRKDC-209ENST00000540819 RDH13Q8NBN7 331 aa9.48□□□□□ -0.89
PRKDC-209ENST00000540819 SLC6A16Q9GZN6 736 aa9.48□□□□□ -0.89
PRKDC-209ENST00000540819 PUS10Q3MIT2 529 aaKnown RBP9.47□□□□□ -0.89
PRKDC-209ENST00000540819 SPRYD7Q5W111 196 aa9.47□□□□□ -0.89
PRKDC-209ENST00000540819 ZNF598Q86UK7 904 aaKnown RBP9.47□□□□□ -0.89
PRKDC-209ENST00000540819 LCE2BO14633 110 aa9.46□□□□□ -0.9
PRKDC-209ENST00000540819 FECHP22830 423 aa9.46□□□□□ -0.9
PRKDC-209ENST00000540819 DDX11L8A8MPP1 907 aa9.45□□□□□ -0.9
PRKDC-209ENST00000540819 NPM2Q86SE8 214 aaKnown RBP9.45□□□□□ -0.9
PRKDC-209ENST00000540819 SPSB2Q99619 263 aa9.45□□□□□ -0.9
PRKDC-209ENST00000540819 PKDCCQ504Y2 493 aa9.43□□□□□ -0.9
PRKDC-209ENST00000540819 ZNF697Q5TEC3 545 aa9.43□□□□□ -0.9
PRKDC-209ENST00000540819 ZNF787Q6DD87 383 aa9.43□□□□□ -0.9
PRKDC-209ENST00000540819 LIAT1Q6ZQX7 453 aa9.43□□□□□ -0.9
PRKDC-209ENST00000540819 SULF1Q8IWU6 871 aa9.43□□□□□ -0.9
PRKDC-209ENST00000540819 BRPF1P55201 1214 aaPredicted RBP9.42□□□□□ -0.9
PRKDC-209ENST00000540819 GPIHBP1Q8IV16 184 aa9.42□□□□□ -0.9
PRKDC-209ENST00000540819 EMID1Q96A84 441 aaPredicted RBP9.42□□□□□ -0.9
PRKDC-209ENST00000540819 ATP6V1AP38606 617 aa9.41□□□□□ -0.9
PRKDC-209ENST00000540819 DGAT1O75907 488 aa9.4□□□□□ -0.9
PRKDC-209ENST00000540819 TRIM26Q12899 539 aaPredicted RBP9.4□□□□□ -0.9
PRKDC-209ENST00000540819 TRIM67Q6ZTA4 783 aa9.4□□□□□ -0.9
PRKDC-209ENST00000540819 GPR37O15354 613 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 UBTFP17480 764 aaKnown RBP9.39□□□□□ -0.91
PRKDC-209ENST00000540819 PRR20EP86478 221 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 PRR20CP86479 221 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 PRR20DP86480 221 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 PRR20BP86481 221 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 PRR20AP86496 221 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 FUT2Q10981 343 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 NLRP7Q8WX94 980 aa9.39□□□□□ -0.91
PRKDC-209ENST00000540819 FMNL1O95466 1100 aaPredicted RBP9.38□□□□□ -0.91
PRKDC-209ENST00000540819 GCGRP47871 477 aa9.38□□□□□ -0.91
PRKDC-209ENST00000540819 GRIPAP1Q4V328 841 aa9.38□□□□□ -0.91
PRKDC-209ENST00000540819 MORN1Q5T089 497 aa9.38□□□□□ -0.91
PRKDC-209ENST00000540819 TNFRSF10AO00220 468 aa9.37□□□□□ -0.91
PRKDC-209ENST00000540819 CD2BP2O95400 341 aaKnown RBP9.36□□□□□ -0.91
PRKDC-209ENST00000540819 FAM187AA6NFU0 413 aa9.35□□□□□ -0.91
PRKDC-209ENST00000540819 GDF9O60383 454 aa9.35□□□□□ -0.91
PRKDC-209ENST00000540819 PLA2G2CQ5R387 149 aa9.35□□□□□ -0.91
PRKDC-209ENST00000540819 LMOD2Q6P5Q4 547 aa9.35□□□□□ -0.91
PRKDC-209ENST00000540819 SLC27A5Q9Y2P5 690 aa9.35□□□□□ -0.91
PRKDC-209ENST00000540819 PHOX2BQ99453 314 aa9.34□□□□□ -0.91
PRKDC-209ENST00000540819 RPIAP49247 311 aa9.33□□□□□ -0.92
PRKDC-209ENST00000540819 MYT1Q01538 1121 aa9.33□□□□□ -0.92
PRKDC-209ENST00000540819 FOXC1Q12948 553 aa9.33□□□□□ -0.92
PRKDC-209ENST00000540819 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms