RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MCM4P33991 863 aa16.35■□□□□ 0.21
SFSWAP-209ENST00000540469 SPINK5Q9NQ38 1064 aaPredicted RBP16.35■□□□□ 0.21
SFSWAP-209ENST00000540469 E9PCH4 1651 aa16.34■□□□□ 0.21
SFSWAP-209ENST00000540469 GPATCH8Q9UKJ3 1502 aaKnown RBP16.34■□□□□ 0.21
SFSWAP-209ENST00000540469 PRAG1Q86YV5 1406 aa16.34■□□□□ 0.21
SFSWAP-209ENST00000540469 TRAK2O60296 914 aa16.33■□□□□ 0.21
SFSWAP-209ENST00000540469 CLCN1P35523 988 aa16.33■□□□□ 0.21
SFSWAP-209ENST00000540469 COL17A1Q9UMD9 1497 aaPredicted RBP16.33■□□□□ 0.2
SFSWAP-209ENST00000540469 ADGBQ8N7X0 1667 aa16.33■□□□□ 0.2
SFSWAP-209ENST00000540469 GRIN2AQ12879 1464 aa16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 MFAP1P55081 439 aaKnown RBP16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 ADGRL2O95490 1459 aa16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 PMFBP1Q8TBY8 1022 aa16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 NKTRP30414 1462 aaKnown RBP16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 RRP9O43818 475 aaKnown RBP16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 PBRM1Q86U86 1689 aa16.32■□□□□ 0.2
SFSWAP-209ENST00000540469 MRE11P49959 708 aa16.31■□□□□ 0.2
SFSWAP-209ENST00000540469 PDE3AQ14432 1141 aa16.31■□□□□ 0.2
SFSWAP-209ENST00000540469 BCL2L13Q9BXK5 485 aa16.31■□□□□ 0.2
SFSWAP-209ENST00000540469 ANTXR1Q9H6X2 564 aa16.3■□□□□ 0.2
SFSWAP-209ENST00000540469 CHMP5Q9NZZ3 219 aa16.3■□□□□ 0.2
SFSWAP-209ENST00000540469 ZNF521Q96K83 1311 aa16.3■□□□□ 0.2
SFSWAP-209ENST00000540469 TBC1D32Q96NH3 1257 aa16.3■□□□□ 0.2
SFSWAP-209ENST00000540469 CDCA8Q53HL2 280 aa16.29■□□□□ 0.2
SFSWAP-209ENST00000540469 HSCBQ8IWL3 235 aa16.29■□□□□ 0.2
SFSWAP-209ENST00000540469 PDZRN3Q9UPQ7 1066 aa16.29■□□□□ 0.2
SFSWAP-209ENST00000540469 SYNJ2O15056 1496 aa16.28■□□□□ 0.2
SFSWAP-209ENST00000540469 ADAMTS12P58397 1594 aa16.28■□□□□ 0.2
SFSWAP-209ENST00000540469 ITSN2Q9NZM3 1697 aa16.27■□□□□ 0.2
SFSWAP-209ENST00000540469 ESPNB1AK53 854 aa16.27■□□□□ 0.2
SFSWAP-209ENST00000540469 RAPGEF6Q8TEU7 1601 aa16.27■□□□□ 0.2
SFSWAP-209ENST00000540469 GRPEL1Q9HAV7 217 aa16.27■□□□□ 0.2
SFSWAP-209ENST00000540469 RWDD1Q9H446 243 aaPredicted RBP16.27■□□□□ 0.19
SFSWAP-209ENST00000540469 RRP7AQ9Y3A4 280 aaKnown RBP16.26■□□□□ 0.19
SFSWAP-209ENST00000540469 C22orf23Q9BZE7 217 aa16.25■□□□□ 0.19
SFSWAP-209ENST00000540469 AMER1Q5JTC6 1135 aaPredicted RBP16.25■□□□□ 0.19
SFSWAP-209ENST00000540469 DMRT2Q9Y5R5 561 aa16.25■□□□□ 0.19
SFSWAP-209ENST00000540469 DDX11L8A8MPP1 907 aa16.25■□□□□ 0.19
SFSWAP-209ENST00000540469 FSD2A1L4K1 749 aa16.24■□□□□ 0.19
SFSWAP-209ENST00000540469 ARID3AQ99856 593 aa16.24■□□□□ 0.19
SFSWAP-209ENST00000540469 PLB1Q6P1J6 1458 aa16.24■□□□□ 0.19
SFSWAP-209ENST00000540469 TNNT2P45379 298 aaPredicted RBP16.24■□□□□ 0.19
SFSWAP-209ENST00000540469 CEP170Q5SW79 1584 aa16.24■□□□□ 0.19
SFSWAP-209ENST00000540469 MAGI1Q96QZ7 1491 aaPredicted RBP16.23■□□□□ 0.19
SFSWAP-209ENST00000540469 FTSJ3Q8IY81 847 aaKnown RBP16.23■□□□□ 0.19
SFSWAP-209ENST00000540469 ANP32BQ92688 251 aaKnown RBP16.23■□□□□ 0.19
SFSWAP-209ENST00000540469 KDM5DQ9BY66 1539 aa16.23■□□□□ 0.19
SFSWAP-209ENST00000540469 PCDHB15Q9Y5E8 787 aa16.23■□□□□ 0.19
SFSWAP-209ENST00000540469 TRMT2AQ8IZ69 625 aaKnown RBP16.22■□□□□ 0.19
SFSWAP-209ENST00000540469 GPRASP1Q5JY77 1395 aa16.22■□□□□ 0.19
SFSWAP-209ENST00000540469 KIAA0556O60303 1618 aa16.21■□□□□ 0.19
SFSWAP-209ENST00000540469 TRPM1Q7Z4N2 1603 aa16.21■□□□□ 0.19
SFSWAP-209ENST00000540469 HSP90AB1P08238 724 aaKnown RBP16.21■□□□□ 0.19
SFSWAP-209ENST00000540469 TNNQ9UQP3 1299 aa16.2■□□□□ 0.18
SFSWAP-209ENST00000540469 DISP1Q96F81 1524 aa16.2■□□□□ 0.18
SFSWAP-209ENST00000540469 A2MP01023 1474 aa16.2■□□□□ 0.18
SFSWAP-209ENST00000540469 OSCARQ8IYS5 282 aa16.2■□□□□ 0.18
SFSWAP-209ENST00000540469 NINLQ9Y2I6 1382 aa16.2■□□□□ 0.18
SFSWAP-209ENST00000540469 MAGI2Q86UL8 1455 aa16.2■□□□□ 0.18
SFSWAP-209ENST00000540469 FAM135AQ9P2D6 1515 aa16.19■□□□□ 0.18
SFSWAP-209ENST00000540469 WWC1Q8IX03 1113 aa16.19■□□□□ 0.18
SFSWAP-209ENST00000540469 FOXD4L1Q9NU39 408 aa16.18■□□□□ 0.18
SFSWAP-209ENST00000540469 GBP4Q96PP9 640 aa16.18■□□□□ 0.18
SFSWAP-209ENST00000540469 CROCC2H7BZ55 1655 aa16.17■□□□□ 0.18
SFSWAP-209ENST00000540469 RLBP1P12271 317 aa16.17■□□□□ 0.18
SFSWAP-209ENST00000540469 RARSP54136 660 aaKnown RBP16.16■□□□□ 0.18
SFSWAP-209ENST00000540469 NGEFQ8N5V2 710 aa16.15■□□□□ 0.18
SFSWAP-209ENST00000540469 ERBB4Q15303 1308 aa16.15■□□□□ 0.18
SFSWAP-209ENST00000540469 PIK3C2GO75747 1445 aa16.15■□□□□ 0.18
SFSWAP-209ENST00000540469 NLRP1Q9C000 1473 aa16.15■□□□□ 0.18
SFSWAP-209ENST00000540469 SHANK2Q9UPX8 1470 aa16.15■□□□□ 0.18
SFSWAP-209ENST00000540469 MSNP26038 577 aaKnown RBP16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 CYB5RLQ6IPT4 315 aa16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 PRDM15P57071 1507 aaPredicted RBP16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 TPM2P07951 284 aa16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 ASXL1Q8IXJ9 1541 aa16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 PTPRGP23470 1445 aa16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 KIAA1211Q6ZU35 1233 aa16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 ISY1Q9ULR0 285 aaKnown RBP16.14■□□□□ 0.17
SFSWAP-209ENST00000540469 WDR7Q9Y4E6 1490 aa16.13■□□□□ 0.17
SFSWAP-209ENST00000540469 AAMPQ13685 434 aa16.13■□□□□ 0.17
SFSWAP-209ENST00000540469 GOLGA6L22H0YM25 854 aa16.12■□□□□ 0.17
SFSWAP-209ENST00000540469 CARMIL2Q6F5E8 1435 aa16.12■□□□□ 0.17
SFSWAP-209ENST00000540469 ITPRIPQ8IWB1 547 aa16.12■□□□□ 0.17
SFSWAP-209ENST00000540469 VIRMAQ69YN4 1812 aaKnown RBP16.11■□□□□ 0.17
SFSWAP-209ENST00000540469 NCLP19338 710 aaKnown RBP16.11■□□□□ 0.17
SFSWAP-209ENST00000540469 TCP11L2Q8N4U5 519 aa16.11■□□□□ 0.17
SFSWAP-209ENST00000540469 MORC1Q86VD1 984 aa16.11■□□□□ 0.17
SFSWAP-209ENST00000540469 RBM10P98175 930 aaKnown RBP16.11■□□□□ 0.17
SFSWAP-209ENST00000540469 TNPO1Q92973 898 aaKnown RBP16.11■□□□□ 0.17
SFSWAP-209ENST00000540469 ZKSCAN2Q63HK3 967 aa16.1■□□□□ 0.17
SFSWAP-209ENST00000540469 DZIP1LQ8IYY4 767 aaKnown RBP16.1■□□□□ 0.17
SFSWAP-209ENST00000540469 ERCC6L2Q5T890 1561 aa16.09■□□□□ 0.17
SFSWAP-209ENST00000540469 SKOR2Q2VWA4 1001 aaPredicted RBP16.09■□□□□ 0.17
SFSWAP-209ENST00000540469 NASPP49321 788 aaPredicted RBP16.09■□□□□ 0.17
SFSWAP-209ENST00000540469 MVPQ14764 893 aaKnown RBP16.09■□□□□ 0.17
SFSWAP-209ENST00000540469 SMC4Q9NTJ3 1288 aa16.09■□□□□ 0.17
SFSWAP-209ENST00000540469 EIF2AK4Q9P2K8 1649 aaKnown RBP16.09■□□□□ 0.17
SFSWAP-209ENST00000540469 GAS2L3Q86XJ1 694 aa16.08■□□□□ 0.17
SFSWAP-209ENST00000540469 RUNDC1Q96C34 613 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms