RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 NUTM2BA6NNL0 878 aaPredicted RBP11.02□□□□□ -0.65
LMO3-220ENST00000539232 NUTM2EB1AL46 878 aaPredicted RBP11.02□□□□□ -0.65
LMO3-220ENST00000539232 NUTM2DQ5VT03 806 aaPredicted RBP11.02□□□□□ -0.65
LMO3-220ENST00000539232 NUTM2AQ8IVF1 878 aaPredicted RBP11.02□□□□□ -0.65
LMO3-220ENST00000539232 KANK1Q14678 1352 aa11.02□□□□□ -0.65
LMO3-220ENST00000539232 ATAD2Q6PL18 1390 aa11.02□□□□□ -0.65
LMO3-220ENST00000539232 EIF2AK4Q9P2K8 1649 aaKnown RBP11.02□□□□□ -0.65
LMO3-220ENST00000539232 SCAF11Q99590 1463 aaKnown RBP11.01□□□□□ -0.65
LMO3-220ENST00000539232 SHPRHQ149N8 1683 aa11.01□□□□□ -0.65
LMO3-220ENST00000539232 NUP155O75694 1391 aa11.01□□□□□ -0.65
LMO3-220ENST00000539232 LRP5O75197 1615 aa11□□□□□ -0.65
LMO3-220ENST00000539232 RBM6P78332 1123 aaKnown RBP11□□□□□ -0.65
LMO3-220ENST00000539232 SLAIN2Q9P270 581 aa11□□□□□ -0.65
LMO3-220ENST00000539232 NOS1P29475 1434 aa11□□□□□ -0.65
LMO3-220ENST00000539232 NAIPQ13075 1403 aa11□□□□□ -0.65
LMO3-220ENST00000539232 LMTK2Q8IWU2 1503 aa10.99□□□□□ -0.65
LMO3-220ENST00000539232 AFF2P51816 1311 aa10.98□□□□□ -0.65
LMO3-220ENST00000539232 PROSER2Q86WR7 435 aaPredicted RBP10.97□□□□□ -0.65
LMO3-220ENST00000539232 MSH6P52701 1360 aa10.97□□□□□ -0.65
LMO3-220ENST00000539232 CEP152O94986 1710 aa10.96□□□□□ -0.65
LMO3-220ENST00000539232 KCNA6P17658 529 aa10.96□□□□□ -0.65
LMO3-220ENST00000539232 TXNDC2Q86VQ3 553 aa10.96□□□□□ -0.65
LMO3-220ENST00000539232 CCDC125Q86Z20 511 aa10.96□□□□□ -0.65
LMO3-220ENST00000539232 UBR1Q8IWV7 1749 aa10.95□□□□□ -0.66
LMO3-220ENST00000539232 EFCAB6Q5THR3 1501 aa10.95□□□□□ -0.66
LMO3-220ENST00000539232 QTRT2Q9H974 415 aaKnown RBP10.95□□□□□ -0.66
LMO3-220ENST00000539232 SLIT1O75093 1534 aa10.94□□□□□ -0.66
LMO3-220ENST00000539232 ARHGAP23Q9P227 1491 aa10.94□□□□□ -0.66
LMO3-220ENST00000539232 TMEM2Q9UHN6 1383 aa10.94□□□□□ -0.66
LMO3-220ENST00000539232 NGLY1Q96IV0 654 aa10.94□□□□□ -0.66
LMO3-220ENST00000539232 HFM1A2PYH4 1435 aa10.93□□□□□ -0.66
LMO3-220ENST00000539232 STAG3Q9UJ98 1225 aa10.93□□□□□ -0.66
LMO3-220ENST00000539232 EID1Q9Y6B2 187 aa10.93□□□□□ -0.66
LMO3-220ENST00000539232 AHDC1Q5TGY3 1603 aaPredicted RBP10.93□□□□□ -0.66
LMO3-220ENST00000539232 NKTRP30414 1462 aaKnown RBP10.93□□□□□ -0.66
LMO3-220ENST00000539232 CHGAP10645 457 aaKnown RBP10.92□□□□□ -0.66
LMO3-220ENST00000539232 SLC26A8Q96RN1 970 aa10.92□□□□□ -0.66
LMO3-220ENST00000539232 SLC52A1Q9NWF4 448 aa10.92□□□□□ -0.66
LMO3-220ENST00000539232 UNC13BO14795 1591 aa10.91□□□□□ -0.66
LMO3-220ENST00000539232 NWD1Q149M9 1564 aa10.9□□□□□ -0.66
LMO3-220ENST00000539232 EP400Q96L91 3159 aa10.9□□□□□ -0.66
LMO3-220ENST00000539232 KDM5AP29375 1690 aaKnown RBP10.89□□□□□ -0.67
LMO3-220ENST00000539232 RPRD2Q5VT52 1461 aaKnown RBP10.89□□□□□ -0.67
LMO3-220ENST00000539232 PIK3C2BO00750 1634 aa10.89□□□□□ -0.67
LMO3-220ENST00000539232 YY1P25490 414 aa10.89□□□□□ -0.67
LMO3-220ENST00000539232 ZFYVE9O95405 1425 aa10.88□□□□□ -0.67
LMO3-220ENST00000539232 DIP2AQ14689 1571 aa10.88□□□□□ -0.67
LMO3-220ENST00000539232 NHSL1Q5SYE7 1610 aa10.87□□□□□ -0.67
LMO3-220ENST00000539232 RIMS2Q9UQ26 1411 aa10.87□□□□□ -0.67
LMO3-220ENST00000539232 C8orf37Q96NL8 207 aa10.87□□□□□ -0.67
LMO3-220ENST00000539232 SLC4A1APQ9BWU0 796 aaKnown RBP10.87□□□□□ -0.67
LMO3-220ENST00000539232 IQGAP3Q86VI3 1631 aa10.86□□□□□ -0.67
LMO3-220ENST00000539232 CFAP65Q6ZU64 1925 aaKnown RBP10.86□□□□□ -0.67
LMO3-220ENST00000539232 TET3O43151 1660 aa10.85□□□□□ -0.67
LMO3-220ENST00000539232 ADGRB3O60242 1522 aa10.85□□□□□ -0.67
LMO3-220ENST00000539232 MPHOSPH9Q99550 1183 aa10.85□□□□□ -0.67
LMO3-220ENST00000539232 E9PCH4 1651 aa10.85□□□□□ -0.67
LMO3-220ENST00000539232 BCANQ96GW7 911 aa10.84□□□□□ -0.67
LMO3-220ENST00000539232 NCOA3Q9Y6Q9 1424 aa10.84□□□□□ -0.67
LMO3-220ENST00000539232 PPP1R15AO75807 674 aaPredicted RBP10.83□□□□□ -0.68
LMO3-220ENST00000539232 SETD5Q9C0A6 1442 aa10.83□□□□□ -0.68
LMO3-220ENST00000539232 RAB3GAP2Q9H2M9 1393 aa10.82□□□□□ -0.68
LMO3-220ENST00000539232 PLEKHG1Q9ULL1 1385 aa10.82□□□□□ -0.68
LMO3-220ENST00000539232 CADPS2Q86UW7 1296 aa10.82□□□□□ -0.68
LMO3-220ENST00000539232 ADAMTS13Q76LX8 1427 aa10.82□□□□□ -0.68
LMO3-220ENST00000539232 TMEM131LA2VDJ0 1609 aa10.81□□□□□ -0.68
LMO3-220ENST00000539232 ZNF326Q5BKZ1 582 aaKnown RBP10.81□□□□□ -0.68
LMO3-220ENST00000539232 TRPC5Q9UL62 973 aaPredicted RBP10.81□□□□□ -0.68
LMO3-220ENST00000539232 BLMP54132 1417 aaPredicted RBP10.81□□□□□ -0.68
LMO3-220ENST00000539232 HRCP23327 699 aa10.8□□□□□ -0.68
LMO3-220ENST00000539232 CHD2O14647 1828 aaKnown RBP10.79□□□□□ -0.68
LMO3-220ENST00000539232 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.79□□□□□ -0.68
LMO3-220ENST00000539232 PTPRUQ92729 1446 aa10.79□□□□□ -0.68
LMO3-220ENST00000539232 ATF3P18847 181 aa10.79□□□□□ -0.68
LMO3-220ENST00000539232 BRINP3Q76B58 766 aa10.79□□□□□ -0.68
LMO3-220ENST00000539232 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.79□□□□□ -0.68
LMO3-220ENST00000539232 LRRC59Q96AG4 307 aaKnown RBP10.79□□□□□ -0.68
LMO3-220ENST00000539232 TBX22Q9Y458 520 aa10.79□□□□□ -0.68
LMO3-220ENST00000539232 METP08581 1390 aa10.78□□□□□ -0.68
LMO3-220ENST00000539232 C14orf37Q86TY3 774 aa10.78□□□□□ -0.68
LMO3-220ENST00000539232 C19orf44Q9H6X5 657 aa10.78□□□□□ -0.68
LMO3-220ENST00000539232 USP21Q9UK80 565 aa10.78□□□□□ -0.68
LMO3-220ENST00000539232 GCC2Q8IWJ2 1684 aa10.78□□□□□ -0.68
LMO3-220ENST00000539232 CLTCL1P53675 1640 aa10.77□□□□□ -0.68
LMO3-220ENST00000539232 BCL9LQ86UU0 1499 aa10.77□□□□□ -0.69
LMO3-220ENST00000539232 RGL3Q3MIN7 710 aa10.77□□□□□ -0.69
LMO3-220ENST00000539232 DEFB132Q7Z7B7 95 aa10.77□□□□□ -0.69
LMO3-220ENST00000539232 PNPLA6Q8IY17 1366 aa10.77□□□□□ -0.69
LMO3-220ENST00000539232 ATRNO75882 1429 aa10.76□□□□□ -0.69
LMO3-220ENST00000539232 TRPM2O94759 1503 aa10.76□□□□□ -0.69
LMO3-220ENST00000539232 SENP3-EIF4A1A0A087X0R7 540 aa10.76□□□□□ -0.69
LMO3-220ENST00000539232 SF3B2Q13435 895 aaKnown RBP10.76□□□□□ -0.69
LMO3-220ENST00000539232 AMOTL2Q9Y2J4 779 aa10.76□□□□□ -0.69
LMO3-220ENST00000539232 ADGRF5Q8IZF2 1346 aa10.76□□□□□ -0.69
LMO3-220ENST00000539232 PSDA5PKW4 1024 aaPredicted RBP10.75□□□□□ -0.69
LMO3-220ENST00000539232 ADAMTS2O95450 1211 aa10.75□□□□□ -0.69
LMO3-220ENST00000539232 HDGFP51858 240 aaKnown RBP10.75□□□□□ -0.69
LMO3-220ENST00000539232 PELP1Q8IZL8 1130 aaKnown RBP10.75□□□□□ -0.69
LMO3-220ENST00000539232 ASXL1Q8IXJ9 1541 aa10.74□□□□□ -0.69
LMO3-220ENST00000539232 FNBP4Q8N3X1 1017 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms