RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 COL17A1Q9UMD9 1497 aaPredicted RBP11.45□□□□□ -0.58
UBE3B-208ENST00000538070 SRPK2P78362 688 aaKnown RBP11.45□□□□□ -0.58
UBE3B-208ENST00000538070 ATP10AO60312 1499 aa11.45□□□□□ -0.58
UBE3B-208ENST00000538070 SHROOM2Q13796 1616 aa11.45□□□□□ -0.58
UBE3B-208ENST00000538070 LRPPRCP42704 1394 aaKnown RBP11.45□□□□□ -0.58
UBE3B-208ENST00000538070 GPRASP1Q5JY77 1395 aa11.45□□□□□ -0.58
UBE3B-208ENST00000538070 PPM1GO15355 546 aaPredicted RBP11.45□□□□□ -0.58
UBE3B-208ENST00000538070 ANP32AP39687 249 aaKnown RBP11.45□□□□□ -0.58
UBE3B-208ENST00000538070 CENPJQ9HC77 1338 aaPredicted RBP11.44□□□□□ -0.58
UBE3B-208ENST00000538070 EIF3AQ14152 1382 aaKnown RBP11.44□□□□□ -0.58
UBE3B-208ENST00000538070 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
UBE3B-208ENST00000538070 CARD14Q9BXL6 1004 aa11.44□□□□□ -0.58
UBE3B-208ENST00000538070 NOS1P29475 1434 aa11.44□□□□□ -0.58
UBE3B-208ENST00000538070 GOLGA2Q08379 1002 aa11.44□□□□□ -0.58
UBE3B-208ENST00000538070 RGS3P49796 1198 aa11.43□□□□□ -0.58
UBE3B-208ENST00000538070 MINK1Q8N4C8 1332 aaPredicted RBP11.43□□□□□ -0.58
UBE3B-208ENST00000538070 MAGI2Q86UL8 1455 aa11.43□□□□□ -0.58
UBE3B-208ENST00000538070 POGKQ9P215 609 aa11.43□□□□□ -0.58
UBE3B-208ENST00000538070 TRPM1Q7Z4N2 1603 aa11.43□□□□□ -0.58
UBE3B-208ENST00000538070 FAM69CQ0P6D2 419 aa11.42□□□□□ -0.58
UBE3B-208ENST00000538070 PDE3BQ13370 1112 aa11.42□□□□□ -0.58
UBE3B-208ENST00000538070 BCL11AQ9H165 835 aa11.42□□□□□ -0.58
UBE3B-208ENST00000538070 ATP7AQ04656 1500 aa11.42□□□□□ -0.58
UBE3B-208ENST00000538070 FBXO31Q5XUX0 539 aaPredicted RBP11.42□□□□□ -0.58
UBE3B-208ENST00000538070 BCL2L13Q9BXK5 485 aa11.42□□□□□ -0.58
UBE3B-208ENST00000538070 U2SURPO15042 1029 aaKnown RBP11.42□□□□□ -0.58
UBE3B-208ENST00000538070 CLASP1Q7Z460 1538 aa11.41□□□□□ -0.58
UBE3B-208ENST00000538070 UNC13BO14795 1591 aa11.41□□□□□ -0.58
UBE3B-208ENST00000538070 SCAF11Q99590 1463 aaKnown RBP11.41□□□□□ -0.58
UBE3B-208ENST00000538070 PAK3O75914 559 aaPredicted RBP11.41□□□□□ -0.58
UBE3B-208ENST00000538070 SPINK5Q9NQ38 1064 aaPredicted RBP11.41□□□□□ -0.58
UBE3B-208ENST00000538070 IQGAP3Q86VI3 1631 aa11.41□□□□□ -0.58
UBE3B-208ENST00000538070 UHRF1BP1LA0JNW5 1464 aa11.41□□□□□ -0.58
UBE3B-208ENST00000538070 BCAR3O75815 825 aa11.4□□□□□ -0.58
UBE3B-208ENST00000538070 IDI1Q13907 227 aa11.4□□□□□ -0.58
UBE3B-208ENST00000538070 ZFYVE16Q7Z3T8 1539 aa11.4□□□□□ -0.58
UBE3B-208ENST00000538070 PLEKHH1Q9ULM0 1364 aa11.39□□□□□ -0.59
UBE3B-208ENST00000538070 PLXNC1O60486 1568 aa11.39□□□□□ -0.59
UBE3B-208ENST00000538070 RTEL1-TNFRSF6BF6WH68 1400 aa11.39□□□□□ -0.59
UBE3B-208ENST00000538070 U2AF1L5P0DN76 240 aaPredicted RBP11.39□□□□□ -0.59
UBE3B-208ENST00000538070 U2AF1Q01081 240 aaKnown RBP eCLIP11.39□□□□□ -0.59
UBE3B-208ENST00000538070 DMRT2Q9Y5R5 561 aa11.39□□□□□ -0.59
UBE3B-208ENST00000538070 GGNBP2Q9H3C7 697 aa11.39□□□□□ -0.59
UBE3B-208ENST00000538070 POLR1AO95602 1720 aaPredicted RBP11.39□□□□□ -0.59
UBE3B-208ENST00000538070 MTHFSP49914 203 aa11.38□□□□□ -0.59
UBE3B-208ENST00000538070 ZBTB47Q9UFB7 747 aaPredicted RBP11.38□□□□□ -0.59
UBE3B-208ENST00000538070 FANCIQ9NVI1 1328 aa11.38□□□□□ -0.59
UBE3B-208ENST00000538070 E9PCH4 1651 aa11.38□□□□□ -0.59
UBE3B-208ENST00000538070 CLUAP1Q96AJ1 413 aa11.38□□□□□ -0.59
UBE3B-208ENST00000538070 PRDM15P57071 1507 aaPredicted RBP11.37□□□□□ -0.59
UBE3B-208ENST00000538070 FBLN1P23142 703 aa11.37□□□□□ -0.59
UBE3B-208ENST00000538070 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.37□□□□□ -0.59
UBE3B-208ENST00000538070 NOP58Q9Y2X3 529 aaKnown RBP11.37□□□□□ -0.59
UBE3B-208ENST00000538070 CLTCL1P53675 1640 aa11.37□□□□□ -0.59
UBE3B-208ENST00000538070 VGFO15240 615 aaPredicted RBP11.37□□□□□ -0.59
UBE3B-208ENST00000538070 LAS1LQ9Y4W2 734 aaKnown RBP11.37□□□□□ -0.59
UBE3B-208ENST00000538070 RNF123Q5XPI4 1314 aa11.36□□□□□ -0.59
UBE3B-208ENST00000538070 NUTM2FA1L443 756 aa11.36□□□□□ -0.59
UBE3B-208ENST00000538070 DUSP27Q5VZP5 1158 aa11.36□□□□□ -0.59
UBE3B-208ENST00000538070 ESF1Q9H501 851 aaKnown RBP11.36□□□□□ -0.59
UBE3B-208ENST00000538070 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.36□□□□□ -0.59
UBE3B-208ENST00000538070 NSD3Q9BZ95 1437 aa11.36□□□□□ -0.59
UBE3B-208ENST00000538070 PDE4AP27815 886 aa11.35□□□□□ -0.59
UBE3B-208ENST00000538070 PRAM1Q96QH2 718 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 C14orf93Q9H972 538 aaKnown RBP11.34□□□□□ -0.59
UBE3B-208ENST00000538070 STAC3Q96MF2 364 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 EIF2AK4Q9P2K8 1649 aaKnown RBP11.34□□□□□ -0.59
UBE3B-208ENST00000538070 PTPRTO14522 1441 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 ZNF518AQ6AHZ1 1483 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 PANK1Q8TE04 598 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 CFAP53Q96M91 514 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 COG6Q9Y2V7 657 aa11.34□□□□□ -0.59
UBE3B-208ENST00000538070 PRKCSHP14314 528 aaPredicted RBP11.33□□□□□ -0.59
UBE3B-208ENST00000538070 SLC4A3P48751 1232 aa11.33□□□□□ -0.59
UBE3B-208ENST00000538070 TCP11L2Q8N4U5 519 aa11.33□□□□□ -0.59
UBE3B-208ENST00000538070 NPATQ14207 1427 aa11.33□□□□□ -0.6
UBE3B-208ENST00000538070 TRPM2O94759 1503 aa11.33□□□□□ -0.6
UBE3B-208ENST00000538070 SOX12O15370 315 aa11.33□□□□□ -0.6
UBE3B-208ENST00000538070 EVC2Q86UK5 1308 aa11.33□□□□□ -0.6
UBE3B-208ENST00000538070 SLFN5Q08AF3 891 aa11.32□□□□□ -0.6
UBE3B-208ENST00000538070 WAPLQ7Z5K2 1190 aa11.32□□□□□ -0.6
UBE3B-208ENST00000538070 CGNL1Q0VF96 1302 aa11.31□□□□□ -0.6
UBE3B-208ENST00000538070 DAXXQ9UER7 740 aaPredicted RBP11.31□□□□□ -0.6
UBE3B-208ENST00000538070 ASXL1Q8IXJ9 1541 aa11.31□□□□□ -0.6
UBE3B-208ENST00000538070 TCERG1O14776 1098 aaKnown RBP11.3□□□□□ -0.6
UBE3B-208ENST00000538070 MADDQ8WXG6 1647 aa11.3□□□□□ -0.6
UBE3B-208ENST00000538070 IPO9Q96P70 1041 aaKnown RBP11.3□□□□□ -0.6
UBE3B-208ENST00000538070 YEATS2Q9ULM3 1422 aa11.3□□□□□ -0.6
UBE3B-208ENST00000538070 PLEKHG5O94827 1062 aa11.3□□□□□ -0.6
UBE3B-208ENST00000538070 TNNQ9UQP3 1299 aa11.3□□□□□ -0.6
UBE3B-208ENST00000538070 ERVK-7P63135 1459 aa11.29□□□□□ -0.6
UBE3B-208ENST00000538070 WWC1Q8IX03 1113 aa11.29□□□□□ -0.6
UBE3B-208ENST00000538070 TSR2Q969E8 191 aaKnown RBP11.29□□□□□ -0.6
UBE3B-208ENST00000538070 SPHKAPQ2M3C7 1700 aa11.29□□□□□ -0.6
UBE3B-208ENST00000538070 E9PSI1 815 aa11.29□□□□□ -0.6
UBE3B-208ENST00000538070 RTL5Q5HYW3 569 aaPredicted RBP11.29□□□□□ -0.6
UBE3B-208ENST00000538070 CABP1Q9NZU7 370 aa11.29□□□□□ -0.6
UBE3B-208ENST00000538070 POGZQ7Z3K3 1410 aa11.28□□□□□ -0.6
UBE3B-208ENST00000538070 BLMP54132 1417 aaPredicted RBP11.28□□□□□ -0.6
UBE3B-208ENST00000538070 RUNDC1Q96C34 613 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms