RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 TET3O43151 1660 aa15.24■□□□□ 0.03
SYNE1-234ENST00000536990 IQGAP1P46940 1657 aa15.24■□□□□ 0.03
SYNE1-234ENST00000536990 CRBNQ96SW2 442 aa15.24■□□□□ 0.03
SYNE1-234ENST00000536990 ATP7AQ04656 1500 aa15.24■□□□□ 0.03
SYNE1-234ENST00000536990 CLTCL1P53675 1640 aa15.24■□□□□ 0.03
SYNE1-234ENST00000536990 KIF3BO15066 747 aa15.23■□□□□ 0.03
SYNE1-234ENST00000536990 CDCA8Q53HL2 280 aa15.23■□□□□ 0.03
SYNE1-234ENST00000536990 KNSTRNQ9Y448 316 aa15.23■□□□□ 0.03
SYNE1-234ENST00000536990 ABCA9Q8IUA7 1624 aa15.23■□□□□ 0.03
SYNE1-234ENST00000536990 SCAF11Q99590 1463 aaKnown RBP15.23■□□□□ 0.03
SYNE1-234ENST00000536990 SCAPERQ9BY12 1400 aa15.22■□□□□ 0.03
SYNE1-234ENST00000536990 RTL5Q5HYW3 569 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-234ENST00000536990 INO80Q9ULG1 1556 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-234ENST00000536990 ADAMTS8Q9UP79 889 aa15.22■□□□□ 0.03
SYNE1-234ENST00000536990 ADGRL1O94910 1474 aa15.2■□□□□ 0.02
SYNE1-234ENST00000536990 VWDEQ8N2E2 1590 aa15.2■□□□□ 0.02
SYNE1-234ENST00000536990 C20orf194Q5TEA3 1177 aa15.19■□□□□ 0.02
SYNE1-234ENST00000536990 PLEKHH1Q9ULM0 1364 aa15.19■□□□□ 0.02
SYNE1-234ENST00000536990 PPP2R1AP30153 589 aa15.19■□□□□ 0.02
SYNE1-234ENST00000536990 SKAP1Q86WV1 359 aa15.19■□□□□ 0.02
SYNE1-234ENST00000536990 EIF3AQ14152 1382 aaKnown RBP15.18■□□□□ 0.02
SYNE1-234ENST00000536990 AMER1Q5JTC6 1135 aaPredicted RBP15.18■□□□□ 0.02
SYNE1-234ENST00000536990 KDM2BQ8NHM5 1336 aa15.18■□□□□ 0.02
SYNE1-234ENST00000536990 ZNF521Q96K83 1311 aa15.18■□□□□ 0.02
SYNE1-234ENST00000536990 SYNMO15061 1565 aa15.17■□□□□ 0.02
SYNE1-234ENST00000536990 DUSP27Q5VZP5 1158 aa15.17■□□□□ 0.02
SYNE1-234ENST00000536990 KIAA1210Q9ULL0 1709 aa15.16■□□□□ 0.02
SYNE1-234ENST00000536990 WDR43Q15061 677 aaKnown RBP eCLIP15.15■□□□□ 0.02
SYNE1-234ENST00000536990 NEURL4Q96JN8 1562 aa15.15■□□□□ 0.02
SYNE1-234ENST00000536990 ASXL2Q76L83 1435 aa15.15■□□□□ 0.02
SYNE1-234ENST00000536990 MYOM1P52179 1685 aa15.14■□□□□ 0.01
SYNE1-234ENST00000536990 LAS1LQ9Y4W2 734 aaKnown RBP15.14■□□□□ 0.01
SYNE1-234ENST00000536990 ASXL1Q8IXJ9 1541 aa15.14■□□□□ 0.01
SYNE1-234ENST00000536990 MROH1Q8NDA8 1641 aa15.14■□□□□ 0.01
SYNE1-234ENST00000536990 SLC24A1O60721 1099 aa15.14■□□□□ 0.01
SYNE1-234ENST00000536990 CFAP70Q5T0N1 1121 aa15.14■□□□□ 0.01
SYNE1-234ENST00000536990 PIK3C2GO75747 1445 aa15.13■□□□□ 0.01
SYNE1-234ENST00000536990 KIF1BO60333 1816 aa15.13■□□□□ 0.01
SYNE1-234ENST00000536990 USP35Q9P2H5 1018 aa15.13■□□□□ 0.01
SYNE1-234ENST00000536990 MAP3K4Q9Y6R4 1608 aa15.12■□□□□ 0.01
SYNE1-234ENST00000536990 UGGT1Q9NYU2 1555 aa15.12■□□□□ 0.01
SYNE1-234ENST00000536990 NPC1L1Q9UHC9 1359 aa15.12■□□□□ 0.01
SYNE1-234ENST00000536990 CENPQQ7L2Z9 268 aaPredicted RBP15.11■□□□□ 0.01
SYNE1-234ENST00000536990 KDM5AP29375 1690 aaKnown RBP15.11■□□□□ 0.01
SYNE1-234ENST00000536990 MYOM2P54296 1465 aa15.11■□□□□ 0.01
SYNE1-234ENST00000536990 ADGRF5Q8IZF2 1346 aa15.11■□□□□ 0.01
SYNE1-234ENST00000536990 NEFMP07197 916 aa15.11■□□□□ 0.01
SYNE1-234ENST00000536990 GOLGA2Q08379 1002 aa15.11■□□□□ 0.01
SYNE1-234ENST00000536990 KIDINS220Q9ULH0 1771 aa15.11■□□□□ 0.01
SYNE1-234ENST00000536990 EFCAB6Q5THR3 1501 aa15.1■□□□□ 0.01
SYNE1-234ENST00000536990 PPM1GO15355 546 aaPredicted RBP15.1■□□□□ 0.01
SYNE1-234ENST00000536990 DDRGK1Q96HY6 314 aa15.1■□□□□ 0.01
SYNE1-234ENST00000536990 SLFN5Q08AF3 891 aa15.1■□□□□ 0.01
SYNE1-234ENST00000536990 TRMT2AQ8IZ69 625 aaKnown RBP15.09■□□□□ 0.01
SYNE1-234ENST00000536990 ABCA6Q8N139 1617 aa15.09■□□□□ 0.01
SYNE1-234ENST00000536990 NPM1P06748 294 aaKnown RBP eCLIP15.09■□□□□ 0.01
SYNE1-234ENST00000536990 ZNF518AQ6AHZ1 1483 aa15.08■□□□□ 0.01
SYNE1-234ENST00000536990 PPRC1Q5VV67 1664 aaKnown RBP15.08■□□□□ 0
SYNE1-234ENST00000536990 ERVK-7P63135 1459 aa15.07■□□□□ 0
SYNE1-234ENST00000536990 IFT172Q9UG01 1749 aa15.07■□□□□ 0
SYNE1-234ENST00000536990 LMTK2Q8IWU2 1503 aa15.06■□□□□ 0
SYNE1-234ENST00000536990 CHGAP10645 457 aaKnown RBP15.06■□□□□ 0
SYNE1-234ENST00000536990 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.06■□□□□ 0
SYNE1-234ENST00000536990 C8orf34Q49A92 452 aa15.06■□□□□ 0
SYNE1-234ENST00000536990 MROH2AA6NES4 1674 aa15.05■□□□□ 0
SYNE1-234ENST00000536990 FAM161AQ3B820 660 aa15.04■□□□□ -0
SYNE1-234ENST00000536990 SPINK5Q9NQ38 1064 aaPredicted RBP15.04■□□□□ -0
SYNE1-234ENST00000536990 CFAP65Q6ZU64 1925 aaKnown RBP15.04■□□□□ -0
SYNE1-234ENST00000536990 CCDC146Q8IYE0 955 aa15.04■□□□□ -0
SYNE1-234ENST00000536990 NRXN1Q9ULB1 1477 aa15.04■□□□□ -0
SYNE1-234ENST00000536990 NKTRP30414 1462 aaKnown RBP15.03■□□□□ -0
SYNE1-234ENST00000536990 NOS1P29475 1434 aa15.03■□□□□ -0
SYNE1-234ENST00000536990 GGT6Q6P531 493 aa15.03■□□□□ -0
SYNE1-234ENST00000536990 CD109Q6YHK3 1445 aa15.02■□□□□ -0
SYNE1-234ENST00000536990 CARD14Q9BXL6 1004 aa15.02■□□□□ -0
SYNE1-234ENST00000536990 SBNO2Q9Y2G9 1366 aa15.02□□□□□ -0.01
SYNE1-234ENST00000536990 APAF1O14727 1248 aa15.02□□□□□ -0.01
SYNE1-234ENST00000536990 ADGRB3O60242 1522 aa15.02□□□□□ -0.01
SYNE1-234ENST00000536990 CENPJQ9HC77 1338 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-234ENST00000536990 MYO3AQ8NEV4 1616 aa15.01□□□□□ -0.01
SYNE1-234ENST00000536990 CFAP74Q9C0B2 1584 aa15.01□□□□□ -0.01
SYNE1-234ENST00000536990 POGZQ7Z3K3 1410 aa15□□□□□ -0.01
SYNE1-234ENST00000536990 NPATQ14207 1427 aa15□□□□□ -0.01
SYNE1-234ENST00000536990 SLC4A3P48751 1232 aa15□□□□□ -0.01
SYNE1-234ENST00000536990 TRAK1Q9UPV9 953 aa15□□□□□ -0.01
SYNE1-234ENST00000536990 MLH3Q9UHC1 1453 aa15□□□□□ -0.01
SYNE1-234ENST00000536990 SETBP1Q9Y6X0 1596 aa15□□□□□ -0.01
SYNE1-234ENST00000536990 E9PSI1 815 aa14.99□□□□□ -0.01
SYNE1-234ENST00000536990 BCAR3O75815 825 aa14.99□□□□□ -0.01
SYNE1-234ENST00000536990 OSCARQ8IYS5 282 aa14.98□□□□□ -0.01
SYNE1-234ENST00000536990 C14orf93Q9H972 538 aaKnown RBP14.98□□□□□ -0.01
SYNE1-234ENST00000536990 DMRT2Q9Y5R5 561 aa14.98□□□□□ -0.01
SYNE1-234ENST00000536990 NFKBIBQ15653 356 aa14.98□□□□□ -0.01
SYNE1-234ENST00000536990 FRMPD1Q5SYB0 1578 aa14.97□□□□□ -0.01
SYNE1-234ENST00000536990 HECW2Q9P2P5 1572 aa14.97□□□□□ -0.01
SYNE1-234ENST00000536990 PPLO60437 1756 aa14.97□□□□□ -0.01
SYNE1-234ENST00000536990 NGEFQ8N5V2 710 aa14.97□□□□□ -0.01
SYNE1-234ENST00000536990 IL27Q8NEV9 243 aa14.97□□□□□ -0.01
SYNE1-234ENST00000536990 RGS3P49796 1198 aa14.96□□□□□ -0.01
SYNE1-234ENST00000536990 RPGRIP1LQ68CZ1 1315 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms