RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 DNAJB2P25686 324 aa8.1□□□□□ -1.11
SKA3-207ENST00000536239 SPRYD7Q5W111 196 aa8.09□□□□□ -1.11
SKA3-207ENST00000536239 ZNF598Q86UK7 904 aaKnown RBP8.09□□□□□ -1.11
SKA3-207ENST00000536239 TLL1O43897 1013 aa8.08□□□□□ -1.12
SKA3-207ENST00000536239 MLLT3P42568 568 aaPredicted RBP8.08□□□□□ -1.12
SKA3-207ENST00000536239 PTGDRQ13258 359 aa8.08□□□□□ -1.12
SKA3-207ENST00000536239 PKDCCQ504Y2 493 aa8.08□□□□□ -1.12
SKA3-207ENST00000536239 ANKLE1Q8NAG6 615 aa8.08□□□□□ -1.12
SKA3-207ENST00000536239 RBM46Q8TBY0 533 aaKnown RBP8.08□□□□□ -1.12
SKA3-207ENST00000536239 ACTN4O43707 911 aaKnown RBP8.07□□□□□ -1.12
SKA3-207ENST00000536239 DGAT1O75907 488 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 PRR20EP86478 221 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 PRR20CP86479 221 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 PRR20DP86480 221 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 PRR20BP86481 221 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 PRR20AP86496 221 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 MYT1Q01538 1121 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 TMEM134Q9H6X4 195 aa8.07□□□□□ -1.12
SKA3-207ENST00000536239 PPEF1O14829 653 aaPredicted RBP8.06□□□□□ -1.12
SKA3-207ENST00000536239 KMT5BQ4FZB7 885 aa8.06□□□□□ -1.12
SKA3-207ENST00000536239 ADGRG1Q9Y653 693 aa8.06□□□□□ -1.12
SKA3-207ENST00000536239 S1PR4O95977 384 aa8.05□□□□□ -1.12
SKA3-207ENST00000536239 LIAT1Q6ZQX7 453 aa8.05□□□□□ -1.12
SKA3-207ENST00000536239 ARHGEF1Q92888 912 aaKnown RBP8.05□□□□□ -1.12
SKA3-207ENST00000536239 RCCD1A6NED2 376 aa8.04□□□□□ -1.12
SKA3-207ENST00000536239 ZNF697Q5TEC3 545 aa8.04□□□□□ -1.12
SKA3-207ENST00000536239 CFHP08603 1231 aa8.03□□□□□ -1.12
SKA3-207ENST00000536239 POTECB2RU33 542 aa8.02□□□□□ -1.13
SKA3-207ENST00000536239 GDF9O60383 454 aa8.02□□□□□ -1.13
SKA3-207ENST00000536239 ADH1BP00325 375 aa8.02□□□□□ -1.13
SKA3-207ENST00000536239 FAM161AQ3B820 660 aa8.02□□□□□ -1.13
SKA3-207ENST00000536239 SLC10A3P09131 477 aa8.01□□□□□ -1.13
SKA3-207ENST00000536239 FAM187AA6NFU0 413 aa8□□□□□ -1.13
SKA3-207ENST00000536239 NR1I2O75469 434 aa8□□□□□ -1.13
SKA3-207ENST00000536239 SLC6A16Q9GZN6 736 aa8□□□□□ -1.13
SKA3-207ENST00000536239 NUTM2FA1L443 756 aa7.99□□□□□ -1.13
SKA3-207ENST00000536239 TNFRSF10AO00220 468 aa7.99□□□□□ -1.13
SKA3-207ENST00000536239 KCNV2Q8TDN2 545 aa7.99□□□□□ -1.13
SKA3-207ENST00000536239 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.98□□□□□ -1.13
SKA3-207ENST00000536239 AMER1Q5JTC6 1135 aaPredicted RBP7.98□□□□□ -1.13
SKA3-207ENST00000536239 PLA2G2CQ5R387 149 aa7.98□□□□□ -1.13
SKA3-207ENST00000536239 SCUBE3Q8IX30 993 aa7.98□□□□□ -1.13
SKA3-207ENST00000536239 FCHSD2O94868 740 aa7.95□□□□□ -1.14
SKA3-207ENST00000536239 PXYLP1Q8TE99 480 aa7.95□□□□□ -1.14
SKA3-207ENST00000536239 AAASQ9NRG9 546 aa7.95□□□□□ -1.14
SKA3-207ENST00000536239 ST8SIA5O15466 376 aa7.94□□□□□ -1.14
SKA3-207ENST00000536239 OATP04181 439 aa7.94□□□□□ -1.14
SKA3-207ENST00000536239 PUS10Q3MIT2 529 aaKnown RBP7.94□□□□□ -1.14
SKA3-207ENST00000536239 SPSB2Q99619 263 aa7.94□□□□□ -1.14
SKA3-207ENST00000536239 TSHZ2Q9NRE2 1034 aa7.94□□□□□ -1.14
SKA3-207ENST00000536239 PKD2L1Q9P0L9 805 aa7.94□□□□□ -1.14
SKA3-207ENST00000536239 RSPH4AQ5TD94 716 aa7.93□□□□□ -1.14
SKA3-207ENST00000536239 LMOD2Q6P5Q4 547 aa7.93□□□□□ -1.14
SKA3-207ENST00000536239 FOXC1Q12948 553 aa7.92□□□□□ -1.14
SKA3-207ENST00000536239 TREML4Q6UXN2 200 aa7.92□□□□□ -1.14
SKA3-207ENST00000536239 RTN4Q9NQC3 1192 aaKnown RBP7.92□□□□□ -1.14
SKA3-207ENST00000536239 RPIAP49247 311 aa7.9□□□□□ -1.14
SKA3-207ENST00000536239 LCE2AQ5TA79 106 aaPredicted RBP7.9□□□□□ -1.14
SKA3-207ENST00000536239 METTL3Q86U44 580 aaKnown RBP7.9□□□□□ -1.14
SKA3-207ENST00000536239 SEMA3EO15041 775 aa7.89□□□□□ -1.15
SKA3-207ENST00000536239 CRIPAKQ8N1N5 446 aa7.89□□□□□ -1.15
SKA3-207ENST00000536239 CD2BP2O95400 341 aaKnown RBP7.88□□□□□ -1.15
SKA3-207ENST00000536239 HIC1Q14526 733 aa7.88□□□□□ -1.15
SKA3-207ENST00000536239 TOR4AQ9NXH8 423 aa7.88□□□□□ -1.15
SKA3-207ENST00000536239 AVPP01185 164 aa7.87□□□□□ -1.15
SKA3-207ENST00000536239 MORN1Q5T089 497 aa7.87□□□□□ -1.15
SKA3-207ENST00000536239 THAP11Q96EK4 314 aa7.87□□□□□ -1.15
SKA3-207ENST00000536239 DACH1Q9UI36 760 aa7.87□□□□□ -1.15
SKA3-207ENST00000536239 FCF1Q9Y324 198 aaKnown RBP7.87□□□□□ -1.15
SKA3-207ENST00000536239 P3H3Q8IVL6 736 aa7.86□□□□□ -1.15
SKA3-207ENST00000536239 DAXXQ9UER7 740 aaPredicted RBP7.86□□□□□ -1.15
SKA3-207ENST00000536239 ATP6V1AP38606 617 aa7.85□□□□□ -1.15
SKA3-207ENST00000536239 CYP4X1Q8N118 509 aa7.85□□□□□ -1.15
SKA3-207ENST00000536239 FAM160A2Q8N612 972 aaPredicted RBP7.85□□□□□ -1.15
SKA3-207ENST00000536239 RDH13Q8NBN7 331 aa7.85□□□□□ -1.15
SKA3-207ENST00000536239 AXIN1O15169 862 aa7.84□□□□□ -1.15
SKA3-207ENST00000536239 FMNL1O95466 1100 aaPredicted RBP7.84□□□□□ -1.15
SKA3-207ENST00000536239 FUT2Q10981 343 aa7.84□□□□□ -1.15
SKA3-207ENST00000536239 FECHP22830 423 aa7.83□□□□□ -1.16
SKA3-207ENST00000536239 CTC1Q2NKJ3 1217 aa7.83□□□□□ -1.16
SKA3-207ENST00000536239 GMPR2Q9P2T1 348 aaKnown RBP7.83□□□□□ -1.16
SKA3-207ENST00000536239 SLC27A5Q9Y2P5 690 aa7.83□□□□□ -1.16
SKA3-207ENST00000536239 DDX11L8A8MPP1 907 aa7.82□□□□□ -1.16
SKA3-207ENST00000536239 SMCPP49901 116 aaPredicted RBP7.82□□□□□ -1.16
SKA3-207ENST00000536239 SALL2Q9Y467 1007 aaPredicted RBP7.82□□□□□ -1.16
SKA3-207ENST00000536239 C11orf95C9JLR9 678 aaPredicted RBP7.81□□□□□ -1.16
SKA3-207ENST00000536239 GNPATO15228 680 aa7.81□□□□□ -1.16
SKA3-207ENST00000536239 WFS1O76024 890 aa7.81□□□□□ -1.16
SKA3-207ENST00000536239 GCGRP47871 477 aa7.81□□□□□ -1.16
SKA3-207ENST00000536239 RBM26Q5T8P6 1007 aaKnown RBP7.81□□□□□ -1.16
SKA3-207ENST00000536239 ZBTB24O43167 697 aaPredicted RBP7.8□□□□□ -1.16
SKA3-207ENST00000536239 BRICD5Q6PL45 260 aa7.8□□□□□ -1.16
SKA3-207ENST00000536239 PRDM9Q9NQV7 894 aa7.8□□□□□ -1.16
SKA3-207ENST00000536239 TTC24A2A3L6 582 aaPredicted RBP7.79□□□□□ -1.16
SKA3-207ENST00000536239 TESPA1A2RU30 521 aaPredicted RBP7.79□□□□□ -1.16
SKA3-207ENST00000536239 NLRP7Q8WX94 980 aa7.79□□□□□ -1.16
SKA3-207ENST00000536239 MSS51Q4VC12 460 aa7.78□□□□□ -1.16
SKA3-207ENST00000536239 SMYD5Q6GMV2 418 aa7.78□□□□□ -1.16
SKA3-207ENST00000536239 SULF1Q8IWU6 871 aa7.78□□□□□ -1.16
SKA3-207ENST00000536239 GPR37O15354 613 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms