RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 PODXL2Q9NZ53 605 aa18.41■□□□□ 0.54
LIG1-203ENST00000536218 CFAP70Q5T0N1 1121 aa18.4■□□□□ 0.54
LIG1-203ENST00000536218 UGGT1Q9NYU2 1555 aa18.4■□□□□ 0.54
LIG1-203ENST00000536218 PTPRTO14522 1441 aa18.39■□□□□ 0.53
LIG1-203ENST00000536218 NFKBIBQ15653 356 aa18.39■□□□□ 0.53
LIG1-203ENST00000536218 PDE4AP27815 886 aa18.38■□□□□ 0.53
LIG1-203ENST00000536218 ADGRF5Q8IZF2 1346 aa18.38■□□□□ 0.53
LIG1-203ENST00000536218 PNISRQ8TF01 805 aaKnown RBP18.37■□□□□ 0.53
LIG1-203ENST00000536218 TRPM2O94759 1503 aa18.37■□□□□ 0.53
LIG1-203ENST00000536218 KIDINS220Q9ULH0 1771 aa18.37■□□□□ 0.53
LIG1-203ENST00000536218 SLC4A3P48751 1232 aa18.37■□□□□ 0.53
LIG1-203ENST00000536218 POGZQ7Z3K3 1410 aa18.37■□□□□ 0.53
LIG1-203ENST00000536218 CLTCL1P53675 1640 aa18.37■□□□□ 0.53
LIG1-203ENST00000536218 NUTM2DQ5VT03 806 aaPredicted RBP18.36■□□□□ 0.53
LIG1-203ENST00000536218 CFAP65Q6ZU64 1925 aaKnown RBP18.36■□□□□ 0.53
LIG1-203ENST00000536218 RALBP1Q15311 655 aa18.36■□□□□ 0.53
LIG1-203ENST00000536218 FAM43AQ8N2R8 423 aa18.36■□□□□ 0.53
LIG1-203ENST00000536218 MYBBP1AQ9BQG0 1328 aaKnown RBP18.36■□□□□ 0.53
LIG1-203ENST00000536218 PER1O15534 1290 aaPredicted RBP18.35■□□□□ 0.53
LIG1-203ENST00000536218 FAM69CQ0P6D2 419 aa18.34■□□□□ 0.53
LIG1-203ENST00000536218 DAXXQ9UER7 740 aaPredicted RBP18.34■□□□□ 0.53
LIG1-203ENST00000536218 KTN1Q86UP2 1357 aaKnown RBP18.34■□□□□ 0.53
LIG1-203ENST00000536218 TET3O43151 1660 aa18.34■□□□□ 0.53
LIG1-203ENST00000536218 DEPDC5O75140 1603 aa18.34■□□□□ 0.53
LIG1-203ENST00000536218 SPHKAPQ2M3C7 1700 aa18.33■□□□□ 0.53
LIG1-203ENST00000536218 PRDM15P57071 1507 aaPredicted RBP18.33■□□□□ 0.53
LIG1-203ENST00000536218 EIF2AK4Q9P2K8 1649 aaKnown RBP18.32■□□□□ 0.52
LIG1-203ENST00000536218 COL17A1Q9UMD9 1497 aaPredicted RBP18.31■□□□□ 0.52
LIG1-203ENST00000536218 MROH1Q8NDA8 1641 aa18.31■□□□□ 0.52
LIG1-203ENST00000536218 VWDEQ8N2E2 1590 aa18.3■□□□□ 0.52
LIG1-203ENST00000536218 TCERG1O14776 1098 aaKnown RBP18.3■□□□□ 0.52
LIG1-203ENST00000536218 NLRP13Q86W25 1043 aa18.29■□□□□ 0.52
LIG1-203ENST00000536218 STAC3Q96MF2 364 aa18.29■□□□□ 0.52
LIG1-203ENST00000536218 NUDCQ9Y266 331 aa18.28■□□□□ 0.52
LIG1-203ENST00000536218 MLH3Q9UHC1 1453 aa18.28■□□□□ 0.52
LIG1-203ENST00000536218 BACH2Q9BYV9 841 aa18.28■□□□□ 0.52
LIG1-203ENST00000536218 KNSTRNQ9Y448 316 aa18.28■□□□□ 0.52
LIG1-203ENST00000536218 MADDQ8WXG6 1647 aa18.27■□□□□ 0.52
LIG1-203ENST00000536218 NPATQ14207 1427 aa18.27■□□□□ 0.52
LIG1-203ENST00000536218 TMEM132EQ6IEE7 984 aa18.27■□□□□ 0.52
LIG1-203ENST00000536218 TRAK1Q9UPV9 953 aa18.27■□□□□ 0.51
LIG1-203ENST00000536218 BRD4O60885 1362 aaPredicted RBP18.26■□□□□ 0.51
LIG1-203ENST00000536218 SCAF11Q99590 1463 aaKnown RBP18.26■□□□□ 0.51
LIG1-203ENST00000536218 EFCAB6Q5THR3 1501 aa18.26■□□□□ 0.51
LIG1-203ENST00000536218 DDRGK1Q96HY6 314 aa18.26■□□□□ 0.51
LIG1-203ENST00000536218 NAP1L5Q96NT1 182 aaPredicted RBP18.26■□□□□ 0.51
LIG1-203ENST00000536218 CEP152O94986 1710 aa18.25■□□□□ 0.51
LIG1-203ENST00000536218 PPRC1Q5VV67 1664 aaKnown RBP18.25■□□□□ 0.51
LIG1-203ENST00000536218 NOS1P29475 1434 aa18.25■□□□□ 0.51
LIG1-203ENST00000536218 HECW2Q9P2P5 1572 aa18.24■□□□□ 0.51
LIG1-203ENST00000536218 YEATS2Q9ULM3 1422 aa18.24■□□□□ 0.51
LIG1-203ENST00000536218 FRMPD1Q5SYB0 1578 aa18.24■□□□□ 0.51
LIG1-203ENST00000536218 HSP90AA2PQ14568 343 aaPredicted RBP18.24■□□□□ 0.51
LIG1-203ENST00000536218 CDCA8Q53HL2 280 aa18.24■□□□□ 0.51
LIG1-203ENST00000536218 PARD3Q8TEW0 1356 aa18.24■□□□□ 0.51
LIG1-203ENST00000536218 NEO1Q92859 1461 aa18.23■□□□□ 0.51
LIG1-203ENST00000536218 CFAP74Q9C0B2 1584 aa18.23■□□□□ 0.51
LIG1-203ENST00000536218 FRAT2O75474 233 aaPredicted RBP18.22■□□□□ 0.51
LIG1-203ENST00000536218 LAMC1P11047 1609 aa18.22■□□□□ 0.51
LIG1-203ENST00000536218 EXOC6Q8TAG9 804 aa18.22■□□□□ 0.51
LIG1-203ENST00000536218 RNF17Q9BXT8 1623 aaKnown RBP18.21■□□□□ 0.51
LIG1-203ENST00000536218 EIF3AQ14152 1382 aaKnown RBP18.21■□□□□ 0.51
LIG1-203ENST00000536218 ABCA6Q8N139 1617 aa18.21■□□□□ 0.51
LIG1-203ENST00000536218 SMG6Q86US8 1419 aaKnown RBP18.21■□□□□ 0.51
LIG1-203ENST00000536218 MLECQ14165 292 aa18.2■□□□□ 0.5
LIG1-203ENST00000536218 SKAP1Q86WV1 359 aa18.2■□□□□ 0.5
LIG1-203ENST00000536218 ARXQ96QS3 562 aa18.2■□□□□ 0.5
LIG1-203ENST00000536218 RRAGDQ9NQL2 400 aaPredicted RBP18.2■□□□□ 0.5
LIG1-203ENST00000536218 IDI1Q13907 227 aa18.19■□□□□ 0.5
LIG1-203ENST00000536218 SAFB2Q14151 953 aaKnown RBP eCLIP18.18■□□□□ 0.5
LIG1-203ENST00000536218 KIF1BO60333 1816 aa18.17■□□□□ 0.5
LIG1-203ENST00000536218 LRPPRCP42704 1394 aaKnown RBP18.17■□□□□ 0.5
LIG1-203ENST00000536218 FBXO31Q5XUX0 539 aaPredicted RBP18.17■□□□□ 0.5
LIG1-203ENST00000536218 LMTK2Q8IWU2 1503 aa18.16■□□□□ 0.5
LIG1-203ENST00000536218 HSP90AA1P07900 732 aaKnown RBP18.16■□□□□ 0.5
LIG1-203ENST00000536218 RNF123Q5XPI4 1314 aa18.16■□□□□ 0.5
LIG1-203ENST00000536218 ABCC3O15438 1527 aa18.16■□□□□ 0.5
LIG1-203ENST00000536218 AMER1Q5JTC6 1135 aaPredicted RBP18.16■□□□□ 0.5
LIG1-203ENST00000536218 MAP3K4Q9Y6R4 1608 aa18.15■□□□□ 0.5
LIG1-203ENST00000536218 MROH2AA6NES4 1674 aa18.15■□□□□ 0.5
LIG1-203ENST00000536218 CENPJQ9HC77 1338 aaPredicted RBP18.15■□□□□ 0.5
LIG1-203ENST00000536218 PPP2R1AP30153 589 aa18.14■□□□□ 0.49
LIG1-203ENST00000536218 C14orf93Q9H972 538 aaKnown RBP18.14■□□□□ 0.49
LIG1-203ENST00000536218 STK26Q9P289 416 aa18.14■□□□□ 0.49
LIG1-203ENST00000536218 IQGAP1P46940 1657 aa18.14■□□□□ 0.49
LIG1-203ENST00000536218 RIMBP3CA6NJZ7 1639 aa18.14■□□□□ 0.49
LIG1-203ENST00000536218 RIMBP3BA6NNM3 1639 aa18.14■□□□□ 0.49
LIG1-203ENST00000536218 RIMBP3Q9UFD9 1639 aa18.14■□□□□ 0.49
LIG1-203ENST00000536218 MS4A1P11836 297 aa18.13■□□□□ 0.49
LIG1-203ENST00000536218 MYOM2P54296 1465 aa18.13■□□□□ 0.49
LIG1-203ENST00000536218 DIP2CQ9Y2E4 1556 aa18.13■□□□□ 0.49
LIG1-203ENST00000536218 STAG3Q9UJ98 1225 aa18.12■□□□□ 0.49
LIG1-203ENST00000536218 ADAMTS8Q9UP79 889 aa18.12■□□□□ 0.49
LIG1-203ENST00000536218 VGFO15240 615 aaPredicted RBP18.12■□□□□ 0.49
LIG1-203ENST00000536218 CDCA7LQ96GN5 454 aa18.12■□□□□ 0.49
LIG1-203ENST00000536218 TSPOAP1O95153 1857 aa18.12■□□□□ 0.49
LIG1-203ENST00000536218 A0A0U1RQG5 324 aaPredicted RBP18.12■□□□□ 0.49
LIG1-203ENST00000536218 PNNQ9H307 717 aaKnown RBP18.11■□□□□ 0.49
LIG1-203ENST00000536218 TNNT2P45379 298 aaPredicted RBP18.1■□□□□ 0.49
LIG1-203ENST00000536218 WDR43Q15061 677 aaKnown RBP eCLIP18.1■□□□□ 0.492e-6■■■■■ 54.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms