RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 HPS5Q9UPZ3 1129 aa6.64□□□□□ -1.35
CD44-238ENST00000534296 FAM161AQ3B820 660 aa6.63□□□□□ -1.35
CD44-238ENST00000534296 SWT1Q5T5J6 900 aaKnown RBP6.63□□□□□ -1.35
CD44-238ENST00000534296 TMEM134Q9H6X4 195 aa6.63□□□□□ -1.35
CD44-238ENST00000534296 IRF6O14896 467 aa6.62□□□□□ -1.35
CD44-238ENST00000534296 FECHP22830 423 aa6.62□□□□□ -1.35
CD44-238ENST00000534296 C3orf80F5H4A9 247 aa6.61□□□□□ -1.35
CD44-238ENST00000534296 ZMYND10O75800 440 aa6.61□□□□□ -1.35
CD44-238ENST00000534296 BARGINQ6ZT62 677 aa6.61□□□□□ -1.35
CD44-238ENST00000534296 SULF1Q8IWU6 871 aa6.61□□□□□ -1.35
CD44-238ENST00000534296 CCDC102AQ96A19 550 aa6.61□□□□□ -1.35
CD44-238ENST00000534296 WBP1LQ9NX94 342 aa6.6□□□□□ -1.35
CD44-238ENST00000534296 KMT5BQ4FZB7 885 aa6.59□□□□□ -1.35
CD44-238ENST00000534296 DAXXQ9UER7 740 aaPredicted RBP6.59□□□□□ -1.35
CD44-238ENST00000534296 CLCN1P35523 988 aa6.58□□□□□ -1.36
CD44-238ENST00000534296 RDH13Q8NBN7 331 aa6.57□□□□□ -1.36
CD44-238ENST00000534296 TTLL12Q14166 644 aaPredicted RBP6.56□□□□□ -1.36
CD44-238ENST00000534296 AK7Q96M32 723 aa6.56□□□□□ -1.36
CD44-238ENST00000534296 GPCPD1Q9NPB8 672 aa6.56□□□□□ -1.36
CD44-238ENST00000534296 DDX11L8A8MPP1 907 aa6.55□□□□□ -1.36
CD44-238ENST00000534296 CFHP08603 1231 aa6.55□□□□□ -1.36
CD44-238ENST00000534296 MDM2Q00987 491 aaPredicted RBP6.55□□□□□ -1.36
CD44-238ENST00000534296 PLA2G2EQ9NZK7 142 aa6.54□□□□□ -1.36
CD44-238ENST00000534296 KCNC4Q03721 635 aa6.52□□□□□ -1.37
CD44-238ENST00000534296 AMHR2Q16671 573 aa6.52□□□□□ -1.37
CD44-238ENST00000534296 GRIPAP1Q4V328 841 aa6.52□□□□□ -1.37
CD44-238ENST00000534296 NLRP7Q8WX94 980 aa6.52□□□□□ -1.37
CD44-238ENST00000534296 PHOX2BQ99453 314 aa6.52□□□□□ -1.37
CD44-238ENST00000534296 PCDHB3Q9Y5E6 796 aa6.52□□□□□ -1.37
CD44-238ENST00000534296 ACTN4O43707 911 aaKnown RBP6.51□□□□□ -1.37
CD44-238ENST00000534296 APLP1P51693 650 aa6.51□□□□□ -1.37
CD44-238ENST00000534296 IL21Q9HBE4 155 aa6.51□□□□□ -1.37
CD44-238ENST00000534296 TRIM66O15016 1216 aa6.5□□□□□ -1.37
CD44-238ENST00000534296 ITGBL1O95965 494 aaPredicted RBP6.5□□□□□ -1.37
CD44-238ENST00000534296 SLC24A3Q9HC58 644 aa6.5□□□□□ -1.37
CD44-238ENST00000534296 NR1I2O75469 434 aa6.49□□□□□ -1.37
CD44-238ENST00000534296 SLC10A3P09131 477 aa6.49□□□□□ -1.37
CD44-238ENST00000534296 IFFO2Q5TF58 517 aa6.49□□□□□ -1.37
CD44-238ENST00000534296 MTRQ99707 1265 aa6.49□□□□□ -1.37
CD44-238ENST00000534296 GCGRP47871 477 aa6.48□□□□□ -1.37
CD44-238ENST00000534296 USP46P62068 366 aa6.48□□□□□ -1.37
CD44-238ENST00000534296 CD46P15529 392 aa6.47□□□□□ -1.37
CD44-238ENST00000534296 COPS2P61201 443 aa6.47□□□□□ -1.37
CD44-238ENST00000534296 GIGYF2Q6Y7W6 1299 aaKnown RBP6.47□□□□□ -1.37
CD44-238ENST00000534296 NUTM1Q86Y26 1132 aa6.47□□□□□ -1.37
CD44-238ENST00000534296 FAM217BQ9NTX9 383 aaPredicted RBP6.47□□□□□ -1.37
CD44-238ENST00000534296 KDM4AO75164 1064 aa6.46□□□□□ -1.38
CD44-238ENST00000534296 GGCXP38435 758 aa6.46□□□□□ -1.38
CD44-238ENST00000534296 ATP6V1AP38606 617 aa6.46□□□□□ -1.38
CD44-238ENST00000534296 PDE4DQ08499 809 aa6.46□□□□□ -1.38
CD44-238ENST00000534296 DIXDC1Q155Q3 683 aa6.46□□□□□ -1.38
CD44-238ENST00000534296 TPRNQ4KMQ1 711 aa6.46□□□□□ -1.38
CD44-238ENST00000534296 SSTR3P32745 418 aaPredicted RBP6.45□□□□□ -1.38
CD44-238ENST00000534296 TJAP1Q5JTD0 557 aa6.45□□□□□ -1.38
CD44-238ENST00000534296 BLOC1S3Q6QNY0 202 aa6.45□□□□□ -1.38
CD44-238ENST00000534296 PARP9Q8IXQ6 854 aa6.45□□□□□ -1.38
CD44-238ENST00000534296 ZPR1O75312 459 aa6.44□□□□□ -1.38
CD44-238ENST00000534296 FUT2Q10981 343 aa6.44□□□□□ -1.38
CD44-238ENST00000534296 Q3C1V9 767 aa6.44□□□□□ -1.38
CD44-238ENST00000534296 TMUB1Q9BVT8 246 aa6.44□□□□□ -1.38
CD44-238ENST00000534296 PUS10Q3MIT2 529 aaKnown RBP6.42□□□□□ -1.38
CD44-238ENST00000534296 BEGAINQ9BUH8 593 aa6.42□□□□□ -1.38
CD44-238ENST00000534296 A0A0G2JS52 829 aa6.41□□□□□ -1.38
CD44-238ENST00000534296 FMNL1O95466 1100 aaPredicted RBP6.41□□□□□ -1.38
CD44-238ENST00000534296 MORN1Q5T089 497 aa6.41□□□□□ -1.38
CD44-238ENST00000534296 HOXA2O43364 376 aa6.4□□□□□ -1.38
CD44-238ENST00000534296 ADH1BP00325 375 aa6.4□□□□□ -1.38
CD44-238ENST00000534296 SCUBE3Q8IX30 993 aa6.4□□□□□ -1.38
CD44-238ENST00000534296 ZNF516Q92618 1163 aa6.4□□□□□ -1.38
CD44-238ENST00000534296 REPIN1Q9BWE0 567 aaKnown RBP6.4□□□□□ -1.38
CD44-238ENST00000534296 RGS20O76081 388 aa6.39□□□□□ -1.39
CD44-238ENST00000534296 DDRGK1Q96HY6 314 aa6.39□□□□□ -1.39
CD44-238ENST00000534296 SPSB2Q99619 263 aa6.39□□□□□ -1.39
CD44-238ENST00000534296 SALL2Q9Y467 1007 aaPredicted RBP6.39□□□□□ -1.39
CD44-238ENST00000534296 NEUROD2Q15784 382 aa6.38□□□□□ -1.39
CD44-238ENST00000534296 RSPH6AQ9H0K4 717 aa6.38□□□□□ -1.39
CD44-238ENST00000534296 SLC27A5Q9Y2P5 690 aa6.38□□□□□ -1.39
CD44-238ENST00000534296 TLL1O43897 1013 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 FDX1P10109 184 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 MS4A1P11836 297 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 SPIRE2Q8WWL2 714 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 TBC1D2Q9BYX2 928 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 SLC6A16Q9GZN6 736 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 KDM4CQ9H3R0 1056 aa6.37□□□□□ -1.39
CD44-238ENST00000534296 GJA5P36382 358 aa6.36□□□□□ -1.39
CD44-238ENST00000534296 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.36□□□□□ -1.39
CD44-238ENST00000534296 PPP1R18Q6NYC8 613 aa6.35□□□□□ -1.39
CD44-238ENST00000534296 NKX2-3Q8TAU0 364 aa6.35□□□□□ -1.39
CD44-238ENST00000534296 ATP1B4Q9UN42 357 aaPredicted RBP6.35□□□□□ -1.39
CD44-238ENST00000534296 SPDYE5A6NIY4 337 aa6.34□□□□□ -1.39
CD44-238ENST00000534296 C6orf229H3BNL8 230 aa6.34□□□□□ -1.39
CD44-238ENST00000534296 MSS51Q4VC12 460 aa6.34□□□□□ -1.39
CD44-238ENST00000534296 BRICD5Q6PL45 260 aa6.34□□□□□ -1.39
CD44-238ENST00000534296 USB1Q9BQ65 265 aaKnown RBP6.34□□□□□ -1.39
CD44-238ENST00000534296 GPBP1L1Q9HC44 474 aaPredicted RBP6.34□□□□□ -1.39
CD44-238ENST00000534296 S1PR4O95977 384 aa6.33□□□□□ -1.4
CD44-238ENST00000534296 RETREG3Q86VR2 466 aa6.33□□□□□ -1.4
CD44-238ENST00000534296 THAP11Q96EK4 314 aa6.33□□□□□ -1.4
CD44-238ENST00000534296 MOXD2PA6NHM9 499 aa6.32□□□□□ -1.4
CD44-238ENST00000534296 MTMR2Q13614 643 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms