RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 NUTM2EB1AL46 878 aaPredicted RBP10.14□□□□□ -0.79
CD44-221ENST00000526000 MEX3CQ5U5Q3 659 aaKnown RBP10.14□□□□□ -0.79
CD44-221ENST00000526000 NUTM2AQ8IVF1 878 aaPredicted RBP10.14□□□□□ -0.79
CD44-221ENST00000526000 TRIM52Q96A61 297 aa10.14□□□□□ -0.79
CD44-221ENST00000526000 RIMS2Q9UQ26 1411 aa10.14□□□□□ -0.79
CD44-221ENST00000526000 PRDM15P57071 1507 aaPredicted RBP10.13□□□□□ -0.79
CD44-221ENST00000526000 TBX22Q9Y458 520 aa10.13□□□□□ -0.79
CD44-221ENST00000526000 NOS1P29475 1434 aa10.13□□□□□ -0.79
CD44-221ENST00000526000 ATF3P18847 181 aa10.12□□□□□ -0.79
CD44-221ENST00000526000 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.12□□□□□ -0.79
CD44-221ENST00000526000 AMOTL2Q9Y2J4 779 aa10.12□□□□□ -0.79
CD44-221ENST00000526000 ANKRD50Q9ULJ7 1429 aa10.12□□□□□ -0.79
CD44-221ENST00000526000 SYNMO15061 1565 aa10.1□□□□□ -0.79
CD44-221ENST00000526000 XIRP1Q702N8 1843 aaKnown RBP10.1□□□□□ -0.79
CD44-221ENST00000526000 TET3O43151 1660 aa10.1□□□□□ -0.79
CD44-221ENST00000526000 ZNF326Q5BKZ1 582 aaKnown RBP10.1□□□□□ -0.79
CD44-221ENST00000526000 C19orf44Q9H6X5 657 aa10.1□□□□□ -0.79
CD44-221ENST00000526000 JCADQ9P266 1359 aa10.1□□□□□ -0.79
CD44-221ENST00000526000 PLEKHG1Q9ULL1 1385 aa10.1□□□□□ -0.79
CD44-221ENST00000526000 DDX17Q92841 729 aaKnown RBP10.09□□□□□ -0.79
CD44-221ENST00000526000 LMTK2Q8IWU2 1503 aa10.08□□□□□ -0.8
CD44-221ENST00000526000 CADPS2Q86UW7 1296 aa10.08□□□□□ -0.8
CD44-221ENST00000526000 NUP155O75694 1391 aa10.08□□□□□ -0.8
CD44-221ENST00000526000 ROBO1Q9Y6N7 1651 aa10.07□□□□□ -0.8
CD44-221ENST00000526000 BRINP3Q76B58 766 aa10.07□□□□□ -0.8
CD44-221ENST00000526000 ZFYVE9O95405 1425 aa10.07□□□□□ -0.8
CD44-221ENST00000526000 ADGRB3O60242 1522 aa10.06□□□□□ -0.8
CD44-221ENST00000526000 CROCC2H7BZ55 1655 aa10.06□□□□□ -0.8
CD44-221ENST00000526000 RXRBP28702 533 aa10.05□□□□□ -0.8
CD44-221ENST00000526000 ZNF772Q68DY9 489 aaPredicted RBP10.05□□□□□ -0.8
CD44-221ENST00000526000 UPF1Q92900 1129 aaKnown RBP eCLIP10.05□□□□□ -0.8
CD44-221ENST00000526000 ADAMTS13Q76LX8 1427 aa10.05□□□□□ -0.8
CD44-221ENST00000526000 ADGRL2O95490 1459 aa10.04□□□□□ -0.8
CD44-221ENST00000526000 PTPRUQ92729 1446 aa10.04□□□□□ -0.8
CD44-221ENST00000526000 NKTRP30414 1462 aaKnown RBP10.04□□□□□ -0.8
CD44-221ENST00000526000 ADAMTS2O95450 1211 aa10.03□□□□□ -0.8
CD44-221ENST00000526000 C8orf37Q96NL8 207 aa10.03□□□□□ -0.8
CD44-221ENST00000526000 SPATA31A6Q5VVP1 1343 aa10.03□□□□□ -0.8
CD44-221ENST00000526000 QTRT2Q9H974 415 aaKnown RBP10.02□□□□□ -0.81
CD44-221ENST00000526000 LRP6O75581 1613 aa10.02□□□□□ -0.81
CD44-221ENST00000526000 RPRD2Q5VT52 1461 aaKnown RBP10.02□□□□□ -0.81
CD44-221ENST00000526000 AFF2P51816 1311 aa10.02□□□□□ -0.81
CD44-221ENST00000526000 PHLPP1O60346 1717 aa10.02□□□□□ -0.81
CD44-221ENST00000526000 METP08581 1390 aa10.01□□□□□ -0.81
CD44-221ENST00000526000 LRRC59Q96AG4 307 aaKnown RBP10□□□□□ -0.81
CD44-221ENST00000526000 NWD1Q149M9 1564 aa10□□□□□ -0.81
CD44-221ENST00000526000 MYO5BQ9ULV0 1848 aa10□□□□□ -0.81
CD44-221ENST00000526000 TMEM131LA2VDJ0 1609 aa10□□□□□ -0.81
CD44-221ENST00000526000 NGLY1Q96IV0 654 aa9.99□□□□□ -0.81
CD44-221ENST00000526000 ORAI2Q96SN7 254 aa9.99□□□□□ -0.81
CD44-221ENST00000526000 GCC2Q8IWJ2 1684 aa9.99□□□□□ -0.81
CD44-221ENST00000526000 NCOA3Q9Y6Q9 1424 aa9.99□□□□□ -0.81
CD44-221ENST00000526000 CHD2O14647 1828 aaKnown RBP9.98□□□□□ -0.81
CD44-221ENST00000526000 SETD1AO15047 1707 aaKnown RBP9.98□□□□□ -0.81
CD44-221ENST00000526000 PIK3R4Q99570 1358 aa9.98□□□□□ -0.81
CD44-221ENST00000526000 KDM5AP29375 1690 aaKnown RBP9.97□□□□□ -0.81
CD44-221ENST00000526000 NUTM2FA1L443 756 aa9.97□□□□□ -0.81
CD44-221ENST00000526000 ROCK1Q13464 1354 aa9.97□□□□□ -0.81
CD44-221ENST00000526000 COL16A1Q07092 1604 aaPredicted RBP9.96□□□□□ -0.81
CD44-221ENST00000526000 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.96□□□□□ -0.81
CD44-221ENST00000526000 PLEKHG5O94827 1062 aa9.96□□□□□ -0.82
CD44-221ENST00000526000 XPCQ01831 940 aaPredicted RBP9.96□□□□□ -0.82
CD44-221ENST00000526000 FOXD1Q16676 465 aa9.96□□□□□ -0.82
CD44-221ENST00000526000 E9PCH4 1651 aa9.96□□□□□ -0.82
CD44-221ENST00000526000 RBM6P78332 1123 aaKnown RBP9.95□□□□□ -0.82
CD44-221ENST00000526000 RGL3Q3MIN7 710 aa9.95□□□□□ -0.82
CD44-221ENST00000526000 STK26Q9P289 416 aa9.95□□□□□ -0.82
CD44-221ENST00000526000 MST1RQ04912 1400 aa9.94□□□□□ -0.82
CD44-221ENST00000526000 TRPM2O94759 1503 aa9.93□□□□□ -0.82
CD44-221ENST00000526000 PNPLA6Q8IY17 1366 aa9.93□□□□□ -0.82
CD44-221ENST00000526000 VGFO15240 615 aaPredicted RBP9.93□□□□□ -0.82
CD44-221ENST00000526000 ESCO1Q5FWF5 840 aa9.93□□□□□ -0.82
CD44-221ENST00000526000 SLC4A1APQ9BWU0 796 aaKnown RBP9.93□□□□□ -0.82
CD44-221ENST00000526000 USP21Q9UK80 565 aa9.93□□□□□ -0.82
CD44-221ENST00000526000 UNC13BO14795 1591 aa9.92□□□□□ -0.82
CD44-221ENST00000526000 FOXO3O43524 673 aa9.92□□□□□ -0.82
CD44-221ENST00000526000 WAPLQ7Z5K2 1190 aa9.92□□□□□ -0.82
CD44-221ENST00000526000 SETD5Q9C0A6 1442 aa9.91□□□□□ -0.82
CD44-221ENST00000526000 ROBO2Q9HCK4 1378 aa9.91□□□□□ -0.82
CD44-221ENST00000526000 AHDC1Q5TGY3 1603 aaPredicted RBP9.91□□□□□ -0.82
CD44-221ENST00000526000 ASXL1Q8IXJ9 1541 aa9.91□□□□□ -0.82
CD44-221ENST00000526000 TMEM132EQ6IEE7 984 aa9.9□□□□□ -0.82
CD44-221ENST00000526000 C1orf167Q5SNV9 1468 aa9.9□□□□□ -0.83
CD44-221ENST00000526000 ADGRL3Q9HAR2 1447 aa9.9□□□□□ -0.83
CD44-221ENST00000526000 IQGAP3Q86VI3 1631 aa9.89□□□□□ -0.83
CD44-221ENST00000526000 TRPC5Q9UL62 973 aaPredicted RBP9.89□□□□□ -0.83
CD44-221ENST00000526000 DIP2AQ14689 1571 aa9.88□□□□□ -0.83
CD44-221ENST00000526000 SOS2Q07890 1332 aaPredicted RBP9.88□□□□□ -0.83
CD44-221ENST00000526000 ADGRF5Q8IZF2 1346 aa9.88□□□□□ -0.83
CD44-221ENST00000526000 RGS12O14924 1447 aa9.88□□□□□ -0.83
CD44-221ENST00000526000 DCCP43146 1447 aa9.88□□□□□ -0.83
CD44-221ENST00000526000 NRXN3Q9Y4C0 1643 aa9.87□□□□□ -0.83
CD44-221ENST00000526000 RPGRIP1LQ68CZ1 1315 aa9.86□□□□□ -0.83
CD44-221ENST00000526000 NAIPQ13075 1403 aa9.86□□□□□ -0.83
CD44-221ENST00000526000 SAFB2Q14151 953 aaKnown RBP eCLIP9.86□□□□□ -0.83
CD44-221ENST00000526000 FNBP4Q8N3X1 1017 aaPredicted RBP9.86□□□□□ -0.83
CD44-221ENST00000526000 SHPRHQ149N8 1683 aa9.86□□□□□ -0.83
CD44-221ENST00000526000 SETBP1Q9Y6X0 1596 aa9.85□□□□□ -0.83
CD44-221ENST00000526000 LMOD2Q6P5Q4 547 aa9.85□□□□□ -0.83
CD44-221ENST00000526000 CABLES1Q8TDN4 633 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms