RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 AFF2P51816 1311 aa22.32■■□□□ 1.16
NKX3-1-202ENST00000523261 NCOA3Q9Y6Q9 1424 aa22.32■■□□□ 1.16
NKX3-1-202ENST00000523261 ADGRB3O60242 1522 aa22.32■■□□□ 1.16
NKX3-1-202ENST00000523261 NUTM2BA6NNL0 878 aaPredicted RBP22.31■■□□□ 1.16
NKX3-1-202ENST00000523261 NUTM2EB1AL46 878 aaPredicted RBP22.31■■□□□ 1.16
NKX3-1-202ENST00000523261 NUTM2AQ8IVF1 878 aaPredicted RBP22.31■■□□□ 1.16
NKX3-1-202ENST00000523261 BCANQ96GW7 911 aa22.3■■□□□ 1.16
NKX3-1-202ENST00000523261 ERBINQ96RT1 1412 aa22.3■■□□□ 1.16
NKX3-1-202ENST00000523261 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.29■■□□□ 1.16
NKX3-1-202ENST00000523261 KIF15Q9NS87 1388 aa22.28■■□□□ 1.16
NKX3-1-202ENST00000523261 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.28■■□□□ 1.16
NKX3-1-202ENST00000523261 NOS1P29475 1434 aa22.27■■□□□ 1.16
NKX3-1-202ENST00000523261 CADPS2Q86UW7 1296 aa22.27■■□□□ 1.16
NKX3-1-202ENST00000523261 PLEKHG1Q9ULL1 1385 aa22.26■■□□□ 1.15
NKX3-1-202ENST00000523261 LMTK2Q8IWU2 1503 aa22.26■■□□□ 1.15
NKX3-1-202ENST00000523261 ZFYVE9O95405 1425 aa22.25■■□□□ 1.15
NKX3-1-202ENST00000523261 RBM6P78332 1123 aaKnown RBP22.25■■□□□ 1.15
NKX3-1-202ENST00000523261 C14orf37Q86TY3 774 aa22.25■■□□□ 1.15
NKX3-1-202ENST00000523261 KANK1Q14678 1352 aa22.25■■□□□ 1.15
NKX3-1-202ENST00000523261 NUTM2DQ5VT03 806 aaPredicted RBP22.24■■□□□ 1.15
NKX3-1-202ENST00000523261 C19orf44Q9H6X5 657 aa22.24■■□□□ 1.15
NKX3-1-202ENST00000523261 BRINP3Q76B58 766 aa22.23■■□□□ 1.15
NKX3-1-202ENST00000523261 QTRT2Q9H974 415 aaKnown RBP22.23■■□□□ 1.15
NKX3-1-202ENST00000523261 MYOM3Q5VTT5 1437 aa22.23■■□□□ 1.15
NKX3-1-202ENST00000523261 ATF3P18847 181 aa22.22■■□□□ 1.15
NKX3-1-202ENST00000523261 SLC52A1Q9NWF4 448 aa22.21■■□□□ 1.15
NKX3-1-202ENST00000523261 ZRANB1Q9UGI0 708 aa22.21■■□□□ 1.15
NKX3-1-202ENST00000523261 TBX22Q9Y458 520 aa22.21■■□□□ 1.15
NKX3-1-202ENST00000523261 SETD5Q9C0A6 1442 aa22.21■■□□□ 1.15
NKX3-1-202ENST00000523261 SETBP1Q9Y6X0 1596 aa22.21■■□□□ 1.15
NKX3-1-202ENST00000523261 RRP7BPQ9NSQ0 103 aa22.2■■□□□ 1.14
NKX3-1-202ENST00000523261 ATAD2Q6PL18 1390 aa22.18■■□□□ 1.14
NKX3-1-202ENST00000523261 C8orf37Q96NL8 207 aa22.18■■□□□ 1.14
NKX3-1-202ENST00000523261 MYO5BQ9ULV0 1848 aa22.17■■□□□ 1.14
NKX3-1-202ENST00000523261 RIMS2Q9UQ26 1411 aa22.17■■□□□ 1.14
NKX3-1-202ENST00000523261 CROCC2H7BZ55 1655 aa22.17■■□□□ 1.14
NKX3-1-202ENST00000523261 PPP1R15AO75807 674 aaPredicted RBP22.16■■□□□ 1.14
NKX3-1-202ENST00000523261 ASXL1Q8IXJ9 1541 aa22.16■■□□□ 1.14
NKX3-1-202ENST00000523261 FOXD1Q16676 465 aa22.15■■□□□ 1.14
NKX3-1-202ENST00000523261 NHSL1Q5SYE7 1610 aa22.15■■□□□ 1.14
NKX3-1-202ENST00000523261 ABCC5O15440 1437 aa22.14■■□□□ 1.14
NKX3-1-202ENST00000523261 ADAMTS13Q76LX8 1427 aa22.14■■□□□ 1.14
NKX3-1-202ENST00000523261 GCC2Q8IWJ2 1684 aa22.12■■□□□ 1.13
NKX3-1-202ENST00000523261 HDGFP51858 240 aaKnown RBP22.12■■□□□ 1.13
NKX3-1-202ENST00000523261 NGLY1Q96IV0 654 aa22.12■■□□□ 1.13
NKX3-1-202ENST00000523261 PIK3R4Q99570 1358 aa22.12■■□□□ 1.13
NKX3-1-202ENST00000523261 TMEM131LA2VDJ0 1609 aa22.11■■□□□ 1.13
NKX3-1-202ENST00000523261 LRRC59Q96AG4 307 aaKnown RBP22.11■■□□□ 1.13
NKX3-1-202ENST00000523261 DCCP43146 1447 aa22.11■■□□□ 1.13
NKX3-1-202ENST00000523261 PNPLA6Q8IY17 1366 aa22.11■■□□□ 1.13
NKX3-1-202ENST00000523261 EP400Q96L91 3159 aa22.08■■□□□ 1.12
NKX3-1-202ENST00000523261 MST1RQ04912 1400 aa22.07■■□□□ 1.12
NKX3-1-202ENST00000523261 RPRD2Q5VT52 1461 aaKnown RBP22.07■■□□□ 1.12
NKX3-1-202ENST00000523261 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.06■■□□□ 1.12
NKX3-1-202ENST00000523261 PTPRUQ92729 1446 aa22.06■■□□□ 1.12
NKX3-1-202ENST00000523261 KANK4Q5T7N3 995 aaPredicted RBP22.05■■□□□ 1.12
NKX3-1-202ENST00000523261 AMOTL2Q9Y2J4 779 aa22.05■■□□□ 1.12
NKX3-1-202ENST00000523261 DAPK1P53355 1430 aa22.05■■□□□ 1.12
NKX3-1-202ENST00000523261 TRPM2O94759 1503 aa22.03■■□□□ 1.12
NKX3-1-202ENST00000523261 ADAMTS2O95450 1211 aa22.03■■□□□ 1.12
NKX3-1-202ENST00000523261 DDX17Q92841 729 aaKnown RBP22.03■■□□□ 1.12
NKX3-1-202ENST00000523261 CCDC125Q86Z20 511 aa22.01■■□□□ 1.11
NKX3-1-202ENST00000523261 PTPN23Q9H3S7 1636 aa22■■□□□ 1.11
NKX3-1-202ENST00000523261 USP21Q9UK80 565 aa22■■□□□ 1.11
NKX3-1-202ENST00000523261 TRPC5Q9UL62 973 aaPredicted RBP22■■□□□ 1.11
NKX3-1-202ENST00000523261 ANKRD30AQ9BXX3 1397 aa21.99■■□□□ 1.11
NKX3-1-202ENST00000523261 XRN1Q8IZH2 1706 aaKnown RBP21.98■■□□□ 1.11
NKX3-1-202ENST00000523261 ATRNO75882 1429 aa21.97■■□□□ 1.11
NKX3-1-202ENST00000523261 FNBP4Q8N3X1 1017 aaPredicted RBP21.97■■□□□ 1.11
NKX3-1-202ENST00000523261 CHIC2Q9UKJ5 165 aa21.97■■□□□ 1.11
NKX3-1-202ENST00000523261 CHGAP10645 457 aaKnown RBP21.96■■□□□ 1.11
NKX3-1-202ENST00000523261 UNC13BO14795 1591 aa21.95■■□□□ 1.11
NKX3-1-202ENST00000523261 VPS8Q8N3P4 1428 aa21.95■■□□□ 1.1
NKX3-1-202ENST00000523261 LRP5O75197 1615 aa21.93■■□□□ 1.1
NKX3-1-202ENST00000523261 LAMC1P11047 1609 aa21.92■■□□□ 1.1
NKX3-1-202ENST00000523261 PTCH1Q13635 1447 aa21.92■■□□□ 1.1
NKX3-1-202ENST00000523261 ADGRL3Q9HAR2 1447 aa21.91■■□□□ 1.1
NKX3-1-202ENST00000523261 NRXN3Q9Y4C0 1643 aa21.9■■□□□ 1.1
NKX3-1-202ENST00000523261 NALCNQ8IZF0 1738 aa21.88■■□□□ 1.09
NKX3-1-202ENST00000523261 SOS2Q07890 1332 aaPredicted RBP21.87■■□□□ 1.09
NKX3-1-202ENST00000523261 ADGRL2O95490 1459 aa21.87■■□□□ 1.09
NKX3-1-202ENST00000523261 C1orf167Q5SNV9 1468 aa21.87■■□□□ 1.09
NKX3-1-202ENST00000523261 BLMP54132 1417 aaPredicted RBP21.87■■□□□ 1.09
NKX3-1-202ENST00000523261 BCL9LQ86UU0 1499 aa21.86■■□□□ 1.09
NKX3-1-202ENST00000523261 COL22A1Q8NFW1 1626 aaPredicted RBP21.84■■□□□ 1.09
NKX3-1-202ENST00000523261 ANKRD50Q9ULJ7 1429 aa21.84■■□□□ 1.09
NKX3-1-202ENST00000523261 E9PCH4 1651 aa21.84■■□□□ 1.09
NKX3-1-202ENST00000523261 METP08581 1390 aa21.84■■□□□ 1.09
NKX3-1-202ENST00000523261 DEFB132Q7Z7B7 95 aa21.82■■□□□ 1.08
NKX3-1-202ENST00000523261 GJD4Q96KN9 370 aaPredicted RBP21.81■■□□□ 1.08
NKX3-1-202ENST00000523261 MYOM2P54296 1465 aa21.81■■□□□ 1.08
NKX3-1-202ENST00000523261 ORAI2Q96SN7 254 aa21.8■■□□□ 1.08
NKX3-1-202ENST00000523261 MARF1Q9Y4F3 1742 aaKnown RBP21.77■■□□□ 1.08
NKX3-1-202ENST00000523261 IQGAP3Q86VI3 1631 aa21.76■■□□□ 1.07
NKX3-1-202ENST00000523261 GLI3P10071 1580 aa21.75■■□□□ 1.07
NKX3-1-202ENST00000523261 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.75■■□□□ 1.07
NKX3-1-202ENST00000523261 SPHKAPQ2M3C7 1700 aa21.74■■□□□ 1.07
NKX3-1-202ENST00000523261 BRWD3Q6RI45 1802 aa21.73■■□□□ 1.07
NKX3-1-202ENST00000523261 RALGAPBQ86X10 1494 aa21.73■■□□□ 1.07
NKX3-1-202ENST00000523261 SF3B2Q13435 895 aaKnown RBP21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms