RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 FOXD4L6Q3SYB3 417 aaPredicted RBP14.64□□□□□ -0.07
SYNPO-204ENST00000519664 FOXD4L3Q6VB84 417 aaPredicted RBP14.64□□□□□ -0.07
SYNPO-204ENST00000519664 VSIG10Q8N0Z9 540 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 COG3Q96JB2 828 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 GBP4Q96PP9 640 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 EHBP1L1Q8N3D4 1523 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 ANKRD30BQ9BXX2 1392 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 MCCP23508 829 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 OSCARQ8IYS5 282 aa14.63□□□□□ -0.07
SYNPO-204ENST00000519664 ARHGAP5Q13017 1502 aa14.62□□□□□ -0.07
SYNPO-204ENST00000519664 ZRSR1Q15695 479 aaKnown RBP14.62□□□□□ -0.07
SYNPO-204ENST00000519664 PKNOX2Q96KN3 472 aa14.61□□□□□ -0.07
SYNPO-204ENST00000519664 GSE1Q14687 1217 aa14.61□□□□□ -0.07
SYNPO-204ENST00000519664 KIAA1211Q6ZU35 1233 aa14.61□□□□□ -0.07
SYNPO-204ENST00000519664 TSR2Q969E8 191 aaKnown RBP14.61□□□□□ -0.07
SYNPO-204ENST00000519664 SNAPC4Q5SXM2 1469 aa14.61□□□□□ -0.07
SYNPO-204ENST00000519664 GOLGA6L4A6NEF3 574 aa14.61□□□□□ -0.07
SYNPO-204ENST00000519664 CSB-PGBD3P0DP91 1061 aa14.61□□□□□ -0.07
SYNPO-204ENST00000519664 PTPRKQ15262 1439 aa14.6□□□□□ -0.07
SYNPO-204ENST00000519664 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.6□□□□□ -0.07
SYNPO-204ENST00000519664 ABCA10Q8WWZ4 1543 aa14.6□□□□□ -0.07
SYNPO-204ENST00000519664 GOLGA6L3A6NEY3 463 aa14.6□□□□□ -0.07
SYNPO-204ENST00000519664 PLB1Q6P1J6 1458 aa14.59□□□□□ -0.07
SYNPO-204ENST00000519664 EID1Q9Y6B2 187 aa14.59□□□□□ -0.07
SYNPO-204ENST00000519664 MSH5O43196 834 aa14.59□□□□□ -0.07
SYNPO-204ENST00000519664 SCAPERQ9BY12 1400 aa14.59□□□□□ -0.07
SYNPO-204ENST00000519664 DNMBPQ6XZF7 1577 aa14.58□□□□□ -0.07
SYNPO-204ENST00000519664 ARID3AQ99856 593 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 SYNJ2O15056 1496 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 HMMRO75330 724 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 LMOD3Q0VAK6 560 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 C20orf194Q5TEA3 1177 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 RILPL2Q969X0 211 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 DDX19BQ9UMR2 479 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 ABCC5O15440 1437 aa14.58□□□□□ -0.08
SYNPO-204ENST00000519664 HSP90AA2PQ14568 343 aaPredicted RBP14.58□□□□□ -0.08
SYNPO-204ENST00000519664 RAPGEF3O95398 923 aa14.57□□□□□ -0.08
SYNPO-204ENST00000519664 FAM69CQ0P6D2 419 aa14.57□□□□□ -0.08
SYNPO-204ENST00000519664 NFKBIBQ15653 356 aa14.57□□□□□ -0.08
SYNPO-204ENST00000519664 NUTM2GQ5VZR2 741 aa14.57□□□□□ -0.08
SYNPO-204ENST00000519664 EXOSC9Q06265 439 aaKnown RBP14.56□□□□□ -0.08
SYNPO-204ENST00000519664 EIF2S2P20042 333 aaKnown RBP14.56□□□□□ -0.08
SYNPO-204ENST00000519664 MSNP26038 577 aaKnown RBP14.56□□□□□ -0.08
SYNPO-204ENST00000519664 CCDC9Q9Y3X0 531 aaKnown RBP14.56□□□□□ -0.08
SYNPO-204ENST00000519664 ARHGEF11O15085 1522 aa14.56□□□□□ -0.08
SYNPO-204ENST00000519664 CHMP3Q9Y3E7 222 aa14.56□□□□□ -0.08
SYNPO-204ENST00000519664 MRC2Q9UBG0 1479 aa14.55□□□□□ -0.08
SYNPO-204ENST00000519664 SUPT6HQ7KZ85 1726 aaKnown RBP14.54□□□□□ -0.08
SYNPO-204ENST00000519664 PRAM1Q96QH2 718 aa14.54□□□□□ -0.08
SYNPO-204ENST00000519664 BACH2Q9BYV9 841 aa14.54□□□□□ -0.08
SYNPO-204ENST00000519664 C1orf115Q9H7X2 142 aa14.53□□□□□ -0.08
SYNPO-204ENST00000519664 PRKAR2BP31323 418 aa14.52□□□□□ -0.08
SYNPO-204ENST00000519664 NGEFQ8N5V2 710 aa14.52□□□□□ -0.08
SYNPO-204ENST00000519664 SMG6Q86US8 1419 aaKnown RBP14.52□□□□□ -0.09
SYNPO-204ENST00000519664 IL27Q8NEV9 243 aa14.52□□□□□ -0.09
SYNPO-204ENST00000519664 MAPKBP1O60336 1514 aa14.52□□□□□ -0.09
SYNPO-204ENST00000519664 FRAT2O75474 233 aaPredicted RBP14.52□□□□□ -0.09
SYNPO-204ENST00000519664 UBE2Q2Q8WVN8 375 aa14.52□□□□□ -0.09
SYNPO-204ENST00000519664 STAC3Q96MF2 364 aa14.52□□□□□ -0.09
SYNPO-204ENST00000519664 PDZRN3Q9UPQ7 1066 aa14.51□□□□□ -0.09
SYNPO-204ENST00000519664 KIAA0586Q9BVV6 1533 aa14.51□□□□□ -0.09
SYNPO-204ENST00000519664 DDX49Q9Y6V7 483 aaKnown RBP14.51□□□□□ -0.09
SYNPO-204ENST00000519664 IFT140Q96RY7 1462 aa14.51□□□□□ -0.09
SYNPO-204ENST00000519664 NCOA1Q15788 1441 aa14.51□□□□□ -0.09
SYNPO-204ENST00000519664 CFAP44Q96MT7 982 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 C22orf23Q9BZE7 217 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 CABP1Q9NZU7 370 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 ERBINQ96RT1 1412 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 HECW1Q76N89 1606 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 NPHP1O15259 732 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 PTPN23Q9H3S7 1636 aa14.5□□□□□ -0.09
SYNPO-204ENST00000519664 ROCK1Q13464 1354 aa14.49□□□□□ -0.09
SYNPO-204ENST00000519664 FKBP5Q13451 457 aaPredicted RBP14.49□□□□□ -0.09
SYNPO-204ENST00000519664 TXNDC2Q86VQ3 553 aa14.49□□□□□ -0.09
SYNPO-204ENST00000519664 ST18O60284 1047 aa14.49□□□□□ -0.09
SYNPO-204ENST00000519664 URB2Q14146 1524 aaKnown RBP14.49□□□□□ -0.09
SYNPO-204ENST00000519664 DRC7Q8IY82 874 aa14.48□□□□□ -0.09
SYNPO-204ENST00000519664 ZNF608Q9ULD9 1512 aaPredicted RBP14.48□□□□□ -0.09
SYNPO-204ENST00000519664 PEG3Q9GZU2 1588 aa14.48□□□□□ -0.09
SYNPO-204ENST00000519664 IQGAP2Q13576 1575 aa14.47□□□□□ -0.09
SYNPO-204ENST00000519664 ZNF428Q96B54 188 aa14.47□□□□□ -0.09
SYNPO-204ENST00000519664 TEFQ10587 303 aa14.47□□□□□ -0.09
SYNPO-204ENST00000519664 UNC13AQ9UPW8 1703 aa14.46□□□□□ -0.09
SYNPO-204ENST00000519664 TULP1O00294 542 aaPredicted RBP14.46□□□□□ -0.09
SYNPO-204ENST00000519664 GNAI1P63096 354 aa14.46□□□□□ -0.09
SYNPO-204ENST00000519664 NOB1Q9ULX3 412 aaKnown RBP14.46□□□□□ -0.09
SYNPO-204ENST00000519664 KIF16BQ96L93 1317 aa14.46□□□□□ -0.09
SYNPO-204ENST00000519664 API5Q9BZZ5 524 aaKnown RBP14.46□□□□□ -0.09
SYNPO-204ENST00000519664 MAP3K1Q13233 1512 aa14.46□□□□□ -0.09
SYNPO-204ENST00000519664 CAMSAP2Q08AD1 1489 aa14.45□□□□□ -0.1
SYNPO-204ENST00000519664 THUMPD2Q9BTF0 503 aaKnown RBP14.45□□□□□ -0.1
SYNPO-204ENST00000519664 WWC1Q8IX03 1113 aa14.45□□□□□ -0.1
SYNPO-204ENST00000519664 TSPYL4Q9UJ04 414 aa14.45□□□□□ -0.1
SYNPO-204ENST00000519664 PDE3AQ14432 1141 aa14.44□□□□□ -0.1
SYNPO-204ENST00000519664 SLFN5Q08AF3 891 aa14.44□□□□□ -0.1
SYNPO-204ENST00000519664 ANO2Q9NQ90 1003 aa14.44□□□□□ -0.1
SYNPO-204ENST00000519664 BRPF3Q9ULD4 1205 aa14.44□□□□□ -0.1
SYNPO-204ENST00000519664 GORABQ5T7V8 394 aa14.44□□□□□ -0.1
SYNPO-204ENST00000519664 RPRD2Q5VT52 1461 aaKnown RBP14.44□□□□□ -0.1
SYNPO-204ENST00000519664 CHMP5Q9NZZ3 219 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms