RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 TESPA1A2RU30 521 aaPredicted RBP11.02□□□□□ -0.65
NUP54-218ENST00000515460 NKX2-3Q8TAU0 364 aa11.02□□□□□ -0.65
NUP54-218ENST00000515460 RCCD1A6NED2 376 aa11.01□□□□□ -0.65
NUP54-218ENST00000515460 PPP1R18Q6NYC8 613 aa11.01□□□□□ -0.65
NUP54-218ENST00000515460 SMYD5Q6GMV2 418 aa11□□□□□ -0.65
NUP54-218ENST00000515460 TMEM134Q9H6X4 195 aa11□□□□□ -0.65
NUP54-218ENST00000515460 VSIG10Q8N0Z9 540 aa10.98□□□□□ -0.65
NUP54-218ENST00000515460 KDM2AQ9Y2K7 1162 aa10.98□□□□□ -0.65
NUP54-218ENST00000515460 PCDHB3Q9Y5E6 796 aa10.97□□□□□ -0.65
NUP54-218ENST00000515460 HIC1Q14526 733 aa10.96□□□□□ -0.65
NUP54-218ENST00000515460 PRR14Q9BWN1 585 aa10.96□□□□□ -0.65
NUP54-218ENST00000515460 PRKD2Q9BZL6 878 aa10.96□□□□□ -0.65
NUP54-218ENST00000515460 OATP04181 439 aa10.95□□□□□ -0.66
NUP54-218ENST00000515460 FECHP22830 423 aa10.95□□□□□ -0.66
NUP54-218ENST00000515460 BLOC1S3Q6QNY0 202 aa10.95□□□□□ -0.66
NUP54-218ENST00000515460 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.95□□□□□ -0.66
NUP54-218ENST00000515460 ZPR1O75312 459 aa10.94□□□□□ -0.66
NUP54-218ENST00000515460 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.93□□□□□ -0.66
NUP54-218ENST00000515460 PXYLP1Q8TE99 480 aa10.93□□□□□ -0.66
NUP54-218ENST00000515460 CCDC180Q9P1Z9 1646 aa10.93□□□□□ -0.66
NUP54-218ENST00000515460 CFHP08603 1231 aa10.92□□□□□ -0.66
NUP54-218ENST00000515460 BICRAQ9NZM4 1560 aa10.91□□□□□ -0.66
NUP54-218ENST00000515460 GNPATO15228 680 aa10.91□□□□□ -0.66
NUP54-218ENST00000515460 SLC10A3P09131 477 aa10.91□□□□□ -0.66
NUP54-218ENST00000515460 KMT5BQ4FZB7 885 aa10.91□□□□□ -0.66
NUP54-218ENST00000515460 Q6ZNB5 142 aa10.91□□□□□ -0.66
NUP54-218ENST00000515460 UNC13AQ9UPW8 1703 aa10.91□□□□□ -0.66
NUP54-218ENST00000515460 GGCXP38435 758 aa10.9□□□□□ -0.66
NUP54-218ENST00000515460 METTL3Q86U44 580 aaKnown RBP10.9□□□□□ -0.66
NUP54-218ENST00000515460 ACTN4O43707 911 aaKnown RBP10.89□□□□□ -0.67
NUP54-218ENST00000515460 GFRA3O60609 400 aa10.88□□□□□ -0.67
NUP54-218ENST00000515460 GPR37O15354 613 aa10.87□□□□□ -0.67
NUP54-218ENST00000515460 TLL1O43897 1013 aa10.87□□□□□ -0.67
NUP54-218ENST00000515460 NLRP7Q8WX94 980 aa10.87□□□□□ -0.67
NUP54-218ENST00000515460 RSPH4AQ5TD94 716 aa10.85□□□□□ -0.67
NUP54-218ENST00000515460 GPIHBP1Q8IV16 184 aa10.85□□□□□ -0.67
NUP54-218ENST00000515460 V9GY48 417 aaPredicted RBP10.85□□□□□ -0.67
NUP54-218ENST00000515460 PUS10Q3MIT2 529 aaKnown RBP10.83□□□□□ -0.68
NUP54-218ENST00000515460 RDH13Q8NBN7 331 aa10.83□□□□□ -0.68
NUP54-218ENST00000515460 TMUB1Q9BVT8 246 aa10.83□□□□□ -0.68
NUP54-218ENST00000515460 LAPTM4AQ15012 233 aa10.82□□□□□ -0.68
NUP54-218ENST00000515460 DDX11L8A8MPP1 907 aa10.81□□□□□ -0.68
NUP54-218ENST00000515460 RNF223E7ERA6 249 aa10.81□□□□□ -0.68
NUP54-218ENST00000515460 PPEF1O14829 653 aaPredicted RBP10.81□□□□□ -0.68
NUP54-218ENST00000515460 NR1I2O75469 434 aa10.81□□□□□ -0.68
NUP54-218ENST00000515460 DAXXQ9UER7 740 aaPredicted RBP10.81□□□□□ -0.68
NUP54-218ENST00000515460 S1PR4O95977 384 aa10.8□□□□□ -0.68
NUP54-218ENST00000515460 PHOX2BQ99453 314 aa10.8□□□□□ -0.68
NUP54-218ENST00000515460 SCUBE3Q8IX30 993 aa10.79□□□□□ -0.68
NUP54-218ENST00000515460 SLC19A1P41440 591 aa10.77□□□□□ -0.69
NUP54-218ENST00000515460 PDZRN3Q9UPQ7 1066 aa10.77□□□□□ -0.69
NUP54-218ENST00000515460 TULP1O00294 542 aaPredicted RBP10.76□□□□□ -0.69
NUP54-218ENST00000515460 ADH1BP00325 375 aa10.76□□□□□ -0.69
NUP54-218ENST00000515460 NRG2O14511 850 aaPredicted RBP10.75□□□□□ -0.69
NUP54-218ENST00000515460 ERCC6Q03468 1493 aa10.74□□□□□ -0.69
NUP54-218ENST00000515460 FUT2Q10981 343 aa10.74□□□□□ -0.69
NUP54-218ENST00000515460 EMID1Q96A84 441 aaPredicted RBP10.74□□□□□ -0.69
NUP54-218ENST00000515460 SLC6A16Q9GZN6 736 aa10.74□□□□□ -0.69
NUP54-218ENST00000515460 TRAF7Q6Q0C0 670 aa10.73□□□□□ -0.69
NUP54-218ENST00000515460 ANKLE1Q8NAG6 615 aa10.73□□□□□ -0.69
NUP54-218ENST00000515460 SPSB2Q99619 263 aa10.73□□□□□ -0.69
NUP54-218ENST00000515460 SULF1Q8IWU6 871 aa10.72□□□□□ -0.69
NUP54-218ENST00000515460 LCE2BO14633 110 aa10.71□□□□□ -0.69
NUP54-218ENST00000515460 GCGRP47871 477 aa10.71□□□□□ -0.69
NUP54-218ENST00000515460 EIF4G1Q04637 1599 aaKnown RBP10.71□□□□□ -0.69
NUP54-218ENST00000515460 ATP6V1AP38606 617 aa10.7□□□□□ -0.7
NUP54-218ENST00000515460 MORN1Q5T089 497 aa10.7□□□□□ -0.7
NUP54-218ENST00000515460 LIAT1Q6ZQX7 453 aa10.7□□□□□ -0.7
NUP54-218ENST00000515460 SPRYD7Q5W111 196 aa10.69□□□□□ -0.7
NUP54-218ENST00000515460 MAP2K5Q13163 448 aa10.68□□□□□ -0.7
NUP54-218ENST00000515460 SLC27A5Q9Y2P5 690 aa10.68□□□□□ -0.7
NUP54-218ENST00000515460 NACADO15069 1562 aa10.67□□□□□ -0.7
NUP54-218ENST00000515460 IRF6O14896 467 aa10.66□□□□□ -0.7
NUP54-218ENST00000515460 PLA2G2CQ5R387 149 aa10.66□□□□□ -0.7
NUP54-218ENST00000515460 TRIM67Q6ZTA4 783 aa10.66□□□□□ -0.7
NUP54-218ENST00000515460 ZNF598Q86UK7 904 aaKnown RBP10.66□□□□□ -0.7
NUP54-218ENST00000515460 FMNL1O95466 1100 aaPredicted RBP10.65□□□□□ -0.7
NUP54-218ENST00000515460 ZNF697Q5TEC3 545 aa10.65□□□□□ -0.7
NUP54-218ENST00000515460 MDM2Q00987 491 aaPredicted RBP10.64□□□□□ -0.71
NUP54-218ENST00000515460 THAP11Q96EK4 314 aa10.64□□□□□ -0.71
NUP54-218ENST00000515460 MINK1Q8N4C8 1332 aaPredicted RBP10.62□□□□□ -0.71
NUP54-218ENST00000515460 TNFRSF10AO00220 468 aa10.62□□□□□ -0.71
NUP54-218ENST00000515460 FAM160A2Q8N612 972 aaPredicted RBP10.62□□□□□ -0.71
NUP54-218ENST00000515460 GRIPAP1Q4V328 841 aa10.61□□□□□ -0.71
NUP54-218ENST00000515460 CD46P15529 392 aa10.6□□□□□ -0.71
NUP54-218ENST00000515460 BRICD5Q6PL45 260 aa10.6□□□□□ -0.71
NUP54-218ENST00000515460 RNF19BQ6ZMZ0 732 aa10.6□□□□□ -0.71
NUP54-218ENST00000515460 CCDC102AQ96A19 550 aa10.6□□□□□ -0.71
NUP54-218ENST00000515460 PRDM9Q9NQV7 894 aa10.6□□□□□ -0.71
NUP54-218ENST00000515460 FCF1Q9Y324 198 aaKnown RBP10.6□□□□□ -0.71
NUP54-218ENST00000515460 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.59□□□□□ -0.71
NUP54-218ENST00000515460 KDM4AO75164 1064 aa10.58□□□□□ -0.72
NUP54-218ENST00000515460 FOXC1Q12948 553 aa10.58□□□□□ -0.72
NUP54-218ENST00000515460 PKDCCQ504Y2 493 aa10.58□□□□□ -0.72
NUP54-218ENST00000515460 KRI1Q8N9T8 703 aaKnown RBP10.57□□□□□ -0.72
NUP54-218ENST00000515460 SALL2Q9Y467 1007 aaPredicted RBP10.57□□□□□ -0.72
NUP54-218ENST00000515460 GDF9O60383 454 aa10.56□□□□□ -0.72
NUP54-218ENST00000515460 PRR20EP86478 221 aa10.56□□□□□ -0.72
NUP54-218ENST00000515460 PRR20CP86479 221 aa10.56□□□□□ -0.72
NUP54-218ENST00000515460 PRR20DP86480 221 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms