RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 LAPTM4AQ15012 233 aa6.33□□□□□ -1.4
PDGFC-208ENST00000512711 NKX2-3Q8TAU0 364 aa6.33□□□□□ -1.4
PDGFC-208ENST00000512711 PXYLP1Q8TE99 480 aa6.33□□□□□ -1.4
PDGFC-208ENST00000512711 PHOX2BQ99453 314 aa6.33□□□□□ -1.4
PDGFC-208ENST00000512711 MTRQ99707 1265 aa6.33□□□□□ -1.4
PDGFC-208ENST00000512711 TMEM134Q9H6X4 195 aa6.33□□□□□ -1.4
PDGFC-208ENST00000512711 GNPATO15228 680 aa6.32□□□□□ -1.4
PDGFC-208ENST00000512711 SLC10A3P09131 477 aa6.32□□□□□ -1.4
PDGFC-208ENST00000512711 DNAJB2P25686 324 aa6.32□□□□□ -1.4
PDGFC-208ENST00000512711 METTL3Q86U44 580 aaKnown RBP6.32□□□□□ -1.4
PDGFC-208ENST00000512711 SLF2Q8IX21 1173 aa6.31□□□□□ -1.4
PDGFC-208ENST00000512711 OATP04181 439 aa6.3□□□□□ -1.4
PDGFC-208ENST00000512711 COPS2P61201 443 aa6.3□□□□□ -1.4
PDGFC-208ENST00000512711 PRKD2Q9BZL6 878 aa6.3□□□□□ -1.4
PDGFC-208ENST00000512711 PPP1R18Q6NYC8 613 aa6.29□□□□□ -1.4
PDGFC-208ENST00000512711 GPIHBP1Q8IV16 184 aa6.29□□□□□ -1.4
PDGFC-208ENST00000512711 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.28□□□□□ -1.4
PDGFC-208ENST00000512711 IL21Q9HBE4 155 aa6.28□□□□□ -1.4
PDGFC-208ENST00000512711 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.27□□□□□ -1.41
PDGFC-208ENST00000512711 NRG2O14511 850 aaPredicted RBP6.26□□□□□ -1.41
PDGFC-208ENST00000512711 BLOC1S3Q6QNY0 202 aa6.26□□□□□ -1.41
PDGFC-208ENST00000512711 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.26□□□□□ -1.41
PDGFC-208ENST00000512711 ZPR1O75312 459 aa6.25□□□□□ -1.41
PDGFC-208ENST00000512711 V9GY48 417 aaPredicted RBP6.25□□□□□ -1.41
PDGFC-208ENST00000512711 ACTN4O43707 911 aaKnown RBP6.24□□□□□ -1.41
PDGFC-208ENST00000512711 CFHP08603 1231 aa6.24□□□□□ -1.41
PDGFC-208ENST00000512711 DAXXQ9UER7 740 aaPredicted RBP6.24□□□□□ -1.41
PDGFC-208ENST00000512711 PCDHB3Q9Y5E6 796 aa6.24□□□□□ -1.41
PDGFC-208ENST00000512711 IRF6O14896 467 aa6.23□□□□□ -1.41
PDGFC-208ENST00000512711 SLC4A3P48751 1232 aa6.23□□□□□ -1.41
PDGFC-208ENST00000512711 PUS10Q3MIT2 529 aaKnown RBP6.23□□□□□ -1.41
PDGFC-208ENST00000512711 DDX11L8A8MPP1 907 aa6.22□□□□□ -1.41
PDGFC-208ENST00000512711 TLL1O43897 1013 aa6.22□□□□□ -1.41
PDGFC-208ENST00000512711 ZNF787Q6DD87 383 aa6.22□□□□□ -1.41
PDGFC-208ENST00000512711 SCUBE3Q8IX30 993 aa6.22□□□□□ -1.41
PDGFC-208ENST00000512711 NECTIN2Q92692 538 aa6.22□□□□□ -1.41
PDGFC-208ENST00000512711 PDZRN3Q9UPQ7 1066 aa6.21□□□□□ -1.42
PDGFC-208ENST00000512711 PPEF1O14829 653 aaPredicted RBP6.2□□□□□ -1.42
PDGFC-208ENST00000512711 MAP2K5Q13163 448 aa6.2□□□□□ -1.42
PDGFC-208ENST00000512711 KMT5BQ4FZB7 885 aa6.2□□□□□ -1.42
PDGFC-208ENST00000512711 LMOD2Q6P5Q4 547 aa6.2□□□□□ -1.42
PDGFC-208ENST00000512711 RDH13Q8NBN7 331 aa6.2□□□□□ -1.42
PDGFC-208ENST00000512711 TULP1O00294 542 aaPredicted RBP6.19□□□□□ -1.42
PDGFC-208ENST00000512711 FUT2Q10981 343 aa6.19□□□□□ -1.42
PDGFC-208ENST00000512711 EMID1Q96A84 441 aaPredicted RBP6.19□□□□□ -1.42
PDGFC-208ENST00000512711 PRR14Q9BWN1 585 aa6.19□□□□□ -1.42
PDGFC-208ENST00000512711 MINK1Q8N4C8 1332 aaPredicted RBP6.19□□□□□ -1.42
PDGFC-208ENST00000512711 GCGRP47871 477 aa6.18□□□□□ -1.42
PDGFC-208ENST00000512711 MDM2Q00987 491 aaPredicted RBP6.18□□□□□ -1.42
PDGFC-208ENST00000512711 CCDC102AQ96A19 550 aa6.18□□□□□ -1.42
PDGFC-208ENST00000512711 ZNF775Q96BV0 537 aaPredicted RBP6.18□□□□□ -1.42
PDGFC-208ENST00000512711 REPIN1Q9BWE0 567 aaKnown RBP6.18□□□□□ -1.42
PDGFC-208ENST00000512711 RNF223E7ERA6 249 aa6.17□□□□□ -1.42
PDGFC-208ENST00000512711 MORN1Q5T089 497 aa6.17□□□□□ -1.42
PDGFC-208ENST00000512711 ZC3H15Q8WU90 426 aaKnown RBP6.17□□□□□ -1.42
PDGFC-208ENST00000512711 ZMYND10O75800 440 aa6.16□□□□□ -1.42
PDGFC-208ENST00000512711 S1PR4O95977 384 aa6.16□□□□□ -1.42
PDGFC-208ENST00000512711 GGCXP38435 758 aa6.16□□□□□ -1.42
PDGFC-208ENST00000512711 RSPH4AQ5TD94 716 aa6.16□□□□□ -1.42
PDGFC-208ENST00000512711 SLC27A5Q9Y2P5 690 aa6.16□□□□□ -1.42
PDGFC-208ENST00000512711 NR1I2O75469 434 aa6.15□□□□□ -1.42
PDGFC-208ENST00000512711 BARGINQ6ZT62 677 aa6.15□□□□□ -1.42
PDGFC-208ENST00000512711 THAP11Q96EK4 314 aa6.15□□□□□ -1.42
PDGFC-208ENST00000512711 TMUB1Q9BVT8 246 aa6.15□□□□□ -1.42
PDGFC-208ENST00000512711 CD46P15529 392 aa6.14□□□□□ -1.43
PDGFC-208ENST00000512711 ATP6V1AP38606 617 aa6.14□□□□□ -1.43
PDGFC-208ENST00000512711 TRIM67Q6ZTA4 783 aa6.14□□□□□ -1.43
PDGFC-208ENST00000512711 SULF1Q8IWU6 871 aa6.14□□□□□ -1.43
PDGFC-208ENST00000512711 KRI1Q8N9T8 703 aaKnown RBP6.14□□□□□ -1.43
PDGFC-208ENST00000512711 HLA-CQ95604 372 aa6.14□□□□□ -1.43
PDGFC-208ENST00000512711 PLA2G2CQ5R387 149 aa6.13□□□□□ -1.43
PDGFC-208ENST00000512711 LIAT1Q6ZQX7 453 aa6.13□□□□□ -1.43
PDGFC-208ENST00000512711 FAM160A2Q8N612 972 aaPredicted RBP6.13□□□□□ -1.43
PDGFC-208ENST00000512711 SPSB2Q99619 263 aa6.13□□□□□ -1.43
PDGFC-208ENST00000512711 ADH1BP00325 375 aa6.12□□□□□ -1.43
PDGFC-208ENST00000512711 SLC19A1P41440 591 aa6.12□□□□□ -1.43
PDGFC-208ENST00000512711 RNF19BQ6ZMZ0 732 aa6.12□□□□□ -1.43
PDGFC-208ENST00000512711 BRICD5Q6PL45 260 aa6.11□□□□□ -1.43
PDGFC-208ENST00000512711 SLC6A16Q9GZN6 736 aa6.11□□□□□ -1.43
PDGFC-208ENST00000512711 FAM217BQ9NTX9 383 aaPredicted RBP6.11□□□□□ -1.43
PDGFC-208ENST00000512711 POTECB2RU33 542 aa6.1□□□□□ -1.43
PDGFC-208ENST00000512711 MYT1Q01538 1121 aa6.1□□□□□ -1.43
PDGFC-208ENST00000512711 SPRYD7Q5W111 196 aa6.1□□□□□ -1.43
PDGFC-208ENST00000512711 GPCPD1Q9NPB8 672 aa6.1□□□□□ -1.43
PDGFC-208ENST00000512711 KDM4AO75164 1064 aa6.09□□□□□ -1.43
PDGFC-208ENST00000512711 SSTR3P32745 418 aaPredicted RBP6.09□□□□□ -1.43
PDGFC-208ENST00000512711 CLCN1P35523 988 aa6.09□□□□□ -1.43
PDGFC-208ENST00000512711 GUCA2AQ02747 115 aa6.09□□□□□ -1.43
PDGFC-208ENST00000512711 ANKLE1Q8NAG6 615 aa6.09□□□□□ -1.43
PDGFC-208ENST00000512711 PRDM9Q9NQV7 894 aa6.09□□□□□ -1.43
PDGFC-208ENST00000512711 FMNL1O95466 1100 aaPredicted RBP6.08□□□□□ -1.44
PDGFC-208ENST00000512711 PKDCCQ504Y2 493 aa6.08□□□□□ -1.44
PDGFC-208ENST00000512711 ZNF598Q86UK7 904 aaKnown RBP6.08□□□□□ -1.44
PDGFC-208ENST00000512711 SYMPKQ92797 1274 aaKnown RBP6.08□□□□□ -1.44
PDGFC-208ENST00000512711 DGAT1O75907 488 aa6.07□□□□□ -1.44
PDGFC-208ENST00000512711 SALL2Q9Y467 1007 aaPredicted RBP6.07□□□□□ -1.44
PDGFC-208ENST00000512711 TRIM66O15016 1216 aa6.06□□□□□ -1.44
PDGFC-208ENST00000512711 PRR20EP86478 221 aa6.06□□□□□ -1.44
PDGFC-208ENST00000512711 PRR20CP86479 221 aa6.06□□□□□ -1.44
PDGFC-208ENST00000512711 PRR20DP86480 221 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms