RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 SMAPO00193 183 aa11.7□□□□□ -0.54
PDLIM3-208ENST00000512380 IFFO2Q5TF58 517 aa11.7□□□□□ -0.54
PDLIM3-208ENST00000512380 PADI6Q6TGC4 694 aa11.7□□□□□ -0.54
PDLIM3-208ENST00000512380 PNMA3Q9UL41 463 aa11.7□□□□□ -0.54
PDLIM3-208ENST00000512380 ARID3CA6NKF2 412 aa11.69□□□□□ -0.54
PDLIM3-208ENST00000512380 GPIHBP1Q8IV16 184 aa11.69□□□□□ -0.54
PDLIM3-208ENST00000512380 PTGDRQ13258 359 aa11.68□□□□□ -0.54
PDLIM3-208ENST00000512380 RBM26Q5T8P6 1007 aaKnown RBP11.68□□□□□ -0.54
PDLIM3-208ENST00000512380 WBP1LQ9NX94 342 aa11.68□□□□□ -0.54
PDLIM3-208ENST00000512380 TSR3Q9UJK0 312 aaKnown RBP11.68□□□□□ -0.54
PDLIM3-208ENST00000512380 PDE4DQ08499 809 aa11.67□□□□□ -0.54
PDLIM3-208ENST00000512380 NUDT18Q6ZVK8 323 aa11.67□□□□□ -0.54
PDLIM3-208ENST00000512380 APBB1O00213 710 aa11.66□□□□□ -0.54
PDLIM3-208ENST00000512380 HPS5Q9UPZ3 1129 aa11.66□□□□□ -0.54
PDLIM3-208ENST00000512380 TRIM66O15016 1216 aa11.65□□□□□ -0.54
PDLIM3-208ENST00000512380 ITGBL1O95965 494 aaPredicted RBP11.65□□□□□ -0.54
PDLIM3-208ENST00000512380 SAMD7Q7Z3H4 446 aa11.65□□□□□ -0.54
PDLIM3-208ENST00000512380 ZBTB7CA1YPR0 619 aa11.63□□□□□ -0.55
PDLIM3-208ENST00000512380 PDIA4P13667 645 aaKnown RBP11.62□□□□□ -0.55
PDLIM3-208ENST00000512380 NUTM2FA1L443 756 aa11.61□□□□□ -0.55
PDLIM3-208ENST00000512380 EYA1Q99502 592 aa11.6□□□□□ -0.55
PDLIM3-208ENST00000512380 FCHSD2O94868 740 aa11.59□□□□□ -0.55
PDLIM3-208ENST00000512380 CCDC9Q9Y3X0 531 aaKnown RBP11.59□□□□□ -0.55
PDLIM3-208ENST00000512380 PPP4CP60510 307 aa11.58□□□□□ -0.56
PDLIM3-208ENST00000512380 FAM117AQ9C073 453 aa11.58□□□□□ -0.56
PDLIM3-208ENST00000512380 A0A0G2JS52 829 aa11.57□□□□□ -0.56
PDLIM3-208ENST00000512380 HDGFP51858 240 aaKnown RBP11.56□□□□□ -0.56
PDLIM3-208ENST00000512380 ADGRG1Q9Y653 693 aa11.56□□□□□ -0.56
PDLIM3-208ENST00000512380 SWT1Q5T5J6 900 aaKnown RBP11.55□□□□□ -0.56
PDLIM3-208ENST00000512380 FLIIQ13045 1269 aa11.54□□□□□ -0.56
PDLIM3-208ENST00000512380 NECTIN2Q92692 538 aa11.54□□□□□ -0.56
PDLIM3-208ENST00000512380 HIC1Q14526 733 aa11.53□□□□□ -0.56
PDLIM3-208ENST00000512380 SLF2Q8IX21 1173 aa11.53□□□□□ -0.56
PDLIM3-208ENST00000512380 RBM46Q8TBY0 533 aaKnown RBP11.53□□□□□ -0.56
PDLIM3-208ENST00000512380 GPR37O15354 613 aa11.52□□□□□ -0.57
PDLIM3-208ENST00000512380 RNF40O75150 1001 aa11.52□□□□□ -0.57
PDLIM3-208ENST00000512380 RGS20O76081 388 aa11.51□□□□□ -0.57
PDLIM3-208ENST00000512380 DNAJB2P25686 324 aa11.51□□□□□ -0.57
PDLIM3-208ENST00000512380 KCNC4Q03721 635 aa11.51□□□□□ -0.57
PDLIM3-208ENST00000512380 PLEKHG3A1L390 1219 aa11.49□□□□□ -0.57
PDLIM3-208ENST00000512380 CCDC82Q8N4S0 544 aa11.49□□□□□ -0.57
PDLIM3-208ENST00000512380 TMEM134Q9H6X4 195 aa11.49□□□□□ -0.57
PDLIM3-208ENST00000512380 SLC4A3P48751 1232 aa11.48□□□□□ -0.57
PDLIM3-208ENST00000512380 APLP1P51693 650 aa11.48□□□□□ -0.57
PDLIM3-208ENST00000512380 DDRGK1Q96HY6 314 aa11.48□□□□□ -0.57
PDLIM3-208ENST00000512380 FAM161AQ3B820 660 aa11.47□□□□□ -0.57
PDLIM3-208ENST00000512380 RCCD1A6NED2 376 aa11.46□□□□□ -0.57
PDLIM3-208ENST00000512380 GNPATO15228 680 aa11.46□□□□□ -0.57
PDLIM3-208ENST00000512380 TJAP1Q5JTD0 557 aa11.46□□□□□ -0.57
PDLIM3-208ENST00000512380 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.45□□□□□ -0.58
PDLIM3-208ENST00000512380 PXYLP1Q8TE99 480 aa11.45□□□□□ -0.58
PDLIM3-208ENST00000512380 MTRQ99707 1265 aa11.45□□□□□ -0.58
PDLIM3-208ENST00000512380 OATP04181 439 aa11.44□□□□□ -0.58
PDLIM3-208ENST00000512380 CLUAP1Q96AJ1 413 aa11.43□□□□□ -0.58
PDLIM3-208ENST00000512380 IL21Q9HBE4 155 aa11.43□□□□□ -0.58
PDLIM3-208ENST00000512380 TRAK2O60296 914 aa11.42□□□□□ -0.58
PDLIM3-208ENST00000512380 METTL3Q86U44 580 aaKnown RBP11.42□□□□□ -0.58
PDLIM3-208ENST00000512380 PRR14Q9BWN1 585 aa11.42□□□□□ -0.58
PDLIM3-208ENST00000512380 A6NJR5 290 aa11.41□□□□□ -0.58
PDLIM3-208ENST00000512380 FECHP22830 423 aa11.41□□□□□ -0.58
PDLIM3-208ENST00000512380 MINK1Q8N4C8 1332 aaPredicted RBP11.38□□□□□ -0.59
PDLIM3-208ENST00000512380 CCDC102AQ96A19 550 aa11.38□□□□□ -0.59
PDLIM3-208ENST00000512380 PARP9Q8IXQ6 854 aa11.37□□□□□ -0.59
PDLIM3-208ENST00000512380 KCTD17Q8N5Z5 321 aa11.35□□□□□ -0.59
PDLIM3-208ENST00000512380 ZNF516Q92618 1163 aa11.35□□□□□ -0.59
PDLIM3-208ENST00000512380 CFHP08603 1231 aa11.34□□□□□ -0.59
PDLIM3-208ENST00000512380 MAP2K5Q13163 448 aa11.34□□□□□ -0.59
PDLIM3-208ENST00000512380 AMHR2Q16671 573 aa11.34□□□□□ -0.59
PDLIM3-208ENST00000512380 KMT5BQ4FZB7 885 aa11.34□□□□□ -0.59
PDLIM3-208ENST00000512380 PCDHB3Q9Y5E6 796 aa11.34□□□□□ -0.59
PDLIM3-208ENST00000512380 ACTN4O43707 911 aaKnown RBP11.33□□□□□ -0.6
PDLIM3-208ENST00000512380 SLC10A3P09131 477 aa11.33□□□□□ -0.6
PDLIM3-208ENST00000512380 COPS2P61201 443 aa11.33□□□□□ -0.6
PDLIM3-208ENST00000512380 GOPCQ9HD26 462 aa11.32□□□□□ -0.6
PDLIM3-208ENST00000512380 IRF6O14896 467 aa11.31□□□□□ -0.6
PDLIM3-208ENST00000512380 PCMTD1Q96MG8 357 aaPredicted RBP11.31□□□□□ -0.6
PDLIM3-208ENST00000512380 ZPR1O75312 459 aa11.3□□□□□ -0.6
PDLIM3-208ENST00000512380 BLOC1S3Q6QNY0 202 aa11.3□□□□□ -0.6
PDLIM3-208ENST00000512380 ZNF777Q9ULD5 760 aaPredicted RBP11.3□□□□□ -0.6
PDLIM3-208ENST00000512380 PHOX2BQ99453 314 aa11.29□□□□□ -0.6
PDLIM3-208ENST00000512380 TRAIPQ9BWF2 469 aa11.29□□□□□ -0.6
PDLIM3-208ENST00000512380 TTLL12Q14166 644 aaPredicted RBP11.28□□□□□ -0.6
PDLIM3-208ENST00000512380 PPP1R18Q6NYC8 613 aa11.28□□□□□ -0.6
PDLIM3-208ENST00000512380 NKX2-3Q8TAU0 364 aa11.28□□□□□ -0.6
PDLIM3-208ENST00000512380 RSPH4AQ5TD94 716 aa11.27□□□□□ -0.61
PDLIM3-208ENST00000512380 AEBP1Q8IUX7 1158 aa11.27□□□□□ -0.61
PDLIM3-208ENST00000512380 RAD21O60216 631 aa11.26□□□□□ -0.61
PDLIM3-208ENST00000512380 MCM6Q14566 821 aa11.26□□□□□ -0.61
PDLIM3-208ENST00000512380 PROSER2Q86WR7 435 aaPredicted RBP11.25□□□□□ -0.61
PDLIM3-208ENST00000512380 NLRP7Q8WX94 980 aa11.25□□□□□ -0.61
PDLIM3-208ENST00000512380 CCDC97Q96F63 343 aaPredicted RBP11.25□□□□□ -0.61
PDLIM3-208ENST00000512380 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.25□□□□□ -0.61
PDLIM3-208ENST00000512380 IRX2Q9BZI1 471 aaPredicted RBP11.24□□□□□ -0.61
PDLIM3-208ENST00000512380 SULF1Q8IWU6 871 aa11.23□□□□□ -0.61
PDLIM3-208ENST00000512380 SERPINA10Q9UK55 444 aa11.23□□□□□ -0.61
PDLIM3-208ENST00000512380 TLL1O43897 1013 aa11.22□□□□□ -0.61
PDLIM3-208ENST00000512380 GGCXP38435 758 aa11.22□□□□□ -0.61
PDLIM3-208ENST00000512380 DDX11L8A8MPP1 907 aa11.21□□□□□ -0.61
PDLIM3-208ENST00000512380 NR1I2O75469 434 aa11.21□□□□□ -0.61
PDLIM3-208ENST00000512380 RDH13Q8NBN7 331 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms