RNA–Protein interactions for RNA: ENST00000511044.1

PCDH1-206, Transcript of protocadherin 1, humanhuman

TSL 1 (best)

Gene PCDH1, Length 2,674 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-206ENST00000511044 MRS2Q9HD23 443 aa15.47■□□□□ 0.07
PCDH1-206ENST00000511044 UNC13BO14795 1591 aa15.46■□□□□ 0.07
PCDH1-206ENST00000511044 DHX29Q7Z478 1369 aaKnown RBP15.46■□□□□ 0.07
PCDH1-206ENST00000511044 B4GALNT3Q6L9W6 998 aa15.46■□□□□ 0.07
PCDH1-206ENST00000511044 PRKRIP1Q9H875 184 aaPredicted RBP15.46■□□□□ 0.07
PCDH1-206ENST00000511044 DIP2CQ9Y2E4 1556 aa15.46■□□□□ 0.07
PCDH1-206ENST00000511044 RGL3Q3MIN7 710 aa15.46■□□□□ 0.07
PCDH1-206ENST00000511044 HSP90B1P14625 803 aaKnown RBP15.45■□□□□ 0.06
PCDH1-206ENST00000511044 MLH3Q9UHC1 1453 aa15.45■□□□□ 0.06
PCDH1-206ENST00000511044 CCDC7Q96M83 1385 aa15.44■□□□□ 0.06
PCDH1-206ENST00000511044 CEP152O94986 1710 aa15.44■□□□□ 0.06
PCDH1-206ENST00000511044 SENP3Q9H4L4 574 aaPredicted RBP15.43■□□□□ 0.06
PCDH1-206ENST00000511044 KDM2AQ9Y2K7 1162 aa15.43■□□□□ 0.06
PCDH1-206ENST00000511044 BCCIPQ9P287 314 aaKnown RBP eCLIP15.42■□□□□ 0.06
PCDH1-206ENST00000511044 SIGLEC1Q9BZZ2 1709 aa15.42■□□□□ 0.06
PCDH1-206ENST00000511044 IQGAP3Q86VI3 1631 aa15.42■□□□□ 0.06
PCDH1-206ENST00000511044 MROH1Q8NDA8 1641 aa15.42■□□□□ 0.06
PCDH1-206ENST00000511044 KDM5DQ9BY66 1539 aa15.41■□□□□ 0.06
PCDH1-206ENST00000511044 TMEM132AQ24JP5 1023 aa15.4■□□□□ 0.06
PCDH1-206ENST00000511044 NBPF8Q3BBV2 869 aa15.4■□□□□ 0.06
PCDH1-206ENST00000511044 E9PCH4 1651 aa15.4■□□□□ 0.06
PCDH1-206ENST00000511044 ARID4BQ4LE39 1312 aaPredicted RBP15.4■□□□□ 0.06
PCDH1-206ENST00000511044 ZBED9Q6R2W3 1325 aa15.39■□□□□ 0.05
PCDH1-206ENST00000511044 WASHC2CQ9Y4E1 1318 aa15.39■□□□□ 0.05
PCDH1-206ENST00000511044 RPRD2Q5VT52 1461 aaKnown RBP15.39■□□□□ 0.05
PCDH1-206ENST00000511044 UGGT1Q9NYU2 1555 aa15.39■□□□□ 0.05
PCDH1-206ENST00000511044 IPO9Q96P70 1041 aaKnown RBP15.39■□□□□ 0.05
PCDH1-206ENST00000511044 MAGI2Q86UL8 1455 aa15.38■□□□□ 0.05
PCDH1-206ENST00000511044 DEPDC5O75140 1603 aa15.38■□□□□ 0.05
PCDH1-206ENST00000511044 ANP32AP39687 249 aaKnown RBP15.38■□□□□ 0.05
PCDH1-206ENST00000511044 KANK1Q14678 1352 aa15.38■□□□□ 0.05
PCDH1-206ENST00000511044 PLA2R1Q13018 1463 aa15.38■□□□□ 0.05
PCDH1-206ENST00000511044 ZBTB47Q9UFB7 747 aaPredicted RBP15.37■□□□□ 0.05
PCDH1-206ENST00000511044 CNGB1Q14028 1251 aaPredicted RBP15.37■□□□□ 0.05
PCDH1-206ENST00000511044 CCDC144AA2RUR9 1427 aa15.37■□□□□ 0.05
PCDH1-206ENST00000511044 KIF7Q2M1P5 1343 aa15.36■□□□□ 0.05
PCDH1-206ENST00000511044 PRDM15P57071 1507 aaPredicted RBP15.35■□□□□ 0.05
PCDH1-206ENST00000511044 CHGAP10645 457 aaKnown RBP15.35■□□□□ 0.05
PCDH1-206ENST00000511044 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.35■□□□□ 0.05
PCDH1-206ENST00000511044 EIF2AK4Q9P2K8 1649 aaKnown RBP15.35■□□□□ 0.05
PCDH1-206ENST00000511044 DCAF11Q8TEB1 546 aa15.35■□□□□ 0.05
PCDH1-206ENST00000511044 ZMYM4Q5VZL5 1548 aa15.34■□□□□ 0.05
PCDH1-206ENST00000511044 NAP1L2Q9ULW6 460 aaPredicted RBP15.34■□□□□ 0.05
PCDH1-206ENST00000511044 POLR3GLQ9BT43 218 aa15.33■□□□□ 0.04
PCDH1-206ENST00000511044 ATP10AO60312 1499 aa15.33■□□□□ 0.04
PCDH1-206ENST00000511044 TET3O43151 1660 aa15.32■□□□□ 0.04
PCDH1-206ENST00000511044 RNF17Q9BXT8 1623 aaKnown RBP15.31■□□□□ 0.04
PCDH1-206ENST00000511044 SPHKAPQ2M3C7 1700 aa15.3■□□□□ 0.04
PCDH1-206ENST00000511044 NUTM2DQ5VT03 806 aaPredicted RBP15.3■□□□□ 0.04
PCDH1-206ENST00000511044 FBXO31Q5XUX0 539 aaPredicted RBP15.3■□□□□ 0.04
PCDH1-206ENST00000511044 ARHGEF40Q8TER5 1519 aa15.3■□□□□ 0.04
PCDH1-206ENST00000511044 NPATQ14207 1427 aa15.3■□□□□ 0.04
PCDH1-206ENST00000511044 SPATA31E1Q6ZUB1 1445 aa15.29■□□□□ 0.04
PCDH1-206ENST00000511044 VWDEQ8N2E2 1590 aa15.29■□□□□ 0.04
PCDH1-206ENST00000511044 ABCC3O15438 1527 aa15.29■□□□□ 0.04
PCDH1-206ENST00000511044 EFCAB6Q5THR3 1501 aa15.29■□□□□ 0.04
PCDH1-206ENST00000511044 CLTCL1P53675 1640 aa15.28■□□□□ 0.04
PCDH1-206ENST00000511044 CAMSAP1Q5T5Y3 1602 aa15.27■□□□□ 0.03
PCDH1-206ENST00000511044 CLTCQ00610 1675 aaKnown RBP15.26■□□□□ 0.03
PCDH1-206ENST00000511044 SENP3-EIF4A1A0A087X0R7 540 aa15.24■□□□□ 0.03
PCDH1-206ENST00000511044 NEFMP07197 916 aa15.24■□□□□ 0.03
PCDH1-206ENST00000511044 SMG6Q86US8 1419 aaKnown RBP15.23■□□□□ 0.03
PCDH1-206ENST00000511044 NUDCQ9Y266 331 aa15.23■□□□□ 0.03
PCDH1-206ENST00000511044 CEBPAP49715 358 aaPredicted RBP15.23■□□□□ 0.03
PCDH1-206ENST00000511044 ESF1Q9H501 851 aaKnown RBP15.23■□□□□ 0.03
PCDH1-206ENST00000511044 TRPM2O94759 1503 aa15.23■□□□□ 0.03
PCDH1-206ENST00000511044 LAS1LQ9Y4W2 734 aaKnown RBP15.21■□□□□ 0.03
PCDH1-206ENST00000511044 MROH2AA6NES4 1674 aa15.21■□□□□ 0.03
PCDH1-206ENST00000511044 USP47Q96K76 1375 aa15.21■□□□□ 0.03
PCDH1-206ENST00000511044 BCORL1Q5H9F3 1711 aa15.21■□□□□ 0.02
PCDH1-206ENST00000511044 BRPF3Q9ULD4 1205 aa15.2■□□□□ 0.02
PCDH1-206ENST00000511044 IGSF3O75054 1194 aa15.2■□□□□ 0.02
PCDH1-206ENST00000511044 NBPF1Q3BBV0 1214 aa15.2■□□□□ 0.02
PCDH1-206ENST00000511044 USP35Q9P2H5 1018 aa15.2■□□□□ 0.02
PCDH1-206ENST00000511044 PTPRTO14522 1441 aa15.19■□□□□ 0.02
PCDH1-206ENST00000511044 TMC1Q8TDI8 760 aa15.19■□□□□ 0.02
PCDH1-206ENST00000511044 ZFP91Q96JP5 570 aaPredicted RBP15.19■□□□□ 0.02
PCDH1-206ENST00000511044 IPO4Q8TEX9 1081 aaKnown RBP15.18■□□□□ 0.02
PCDH1-206ENST00000511044 PPP6R1Q9UPN7 881 aa15.18■□□□□ 0.02
PCDH1-206ENST00000511044 SYNMO15061 1565 aa15.18■□□□□ 0.02
PCDH1-206ENST00000511044 LMTK2Q8IWU2 1503 aa15.17■□□□□ 0.02
PCDH1-206ENST00000511044 MYO5BQ9ULV0 1848 aa15.17■□□□□ 0.02
PCDH1-206ENST00000511044 IDI1Q13907 227 aa15.17■□□□□ 0.02
PCDH1-206ENST00000511044 CHMP4BQ9H444 224 aaKnown RBP15.17■□□□□ 0.02
PCDH1-206ENST00000511044 KIF1BO60333 1816 aa15.17■□□□□ 0.02
PCDH1-206ENST00000511044 CARD11Q9BXL7 1154 aa15.16■□□□□ 0.02
PCDH1-206ENST00000511044 RNF123Q5XPI4 1314 aa15.15■□□□□ 0.02
PCDH1-206ENST00000511044 PNISRQ8TF01 805 aaKnown RBP15.15■□□□□ 0.02
PCDH1-206ENST00000511044 PREX1Q8TCU6 1659 aa15.15■□□□□ 0.02
PCDH1-206ENST00000511044 ROCK2O75116 1388 aaKnown RBP15.15■□□□□ 0.02
PCDH1-206ENST00000511044 PLCB2Q00722 1185 aa15.14■□□□□ 0.01
PCDH1-206ENST00000511044 STAG3Q9UJ98 1225 aa15.14■□□□□ 0.01
PCDH1-206ENST00000511044 POLR1AO95602 1720 aaPredicted RBP15.14■□□□□ 0.01
PCDH1-206ENST00000511044 ZC3H13Q5T200 1668 aaKnown RBP15.14■□□□□ 0.01
PCDH1-206ENST00000511044 ADGRF5Q8IZF2 1346 aa15.14■□□□□ 0.01
PCDH1-206ENST00000511044 AGLP35573 1532 aa15.14■□□□□ 0.01
PCDH1-206ENST00000511044 REREQ9P2R6 1566 aa15.13■□□□□ 0.01
PCDH1-206ENST00000511044 PRAG1Q86YV5 1406 aa15.13■□□□□ 0.01
PCDH1-206ENST00000511044 ZMYM3Q14202 1370 aa15.12■□□□□ 0.01
PCDH1-206ENST00000511044 NOS1P29475 1434 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms