RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-222	ENST00000508238	FAM50A	Q14320	339 aa	Known RBP	12.27	□□□□□ -0.45
UBE2D3-222	ENST00000508238	KLHL34	Q8N239	644 aa		12.27	□□□□□ -0.45
UBE2D3-222	ENST00000508238	ANKLE2	Q86XL3	938 aa		12.26	□□□□□ -0.45
UBE2D3-222	ENST00000508238	ERVK-7	P63135	1459 aa		12.26	□□□□□ -0.45
UBE2D3-222	ENST00000508238	DEPDC5	O75140	1603 aa		12.26	□□□□□ -0.45
UBE2D3-222	ENST00000508238	KANK1	Q14678	1352 aa		12.25	□□□□□ -0.45
UBE2D3-222	ENST00000508238	IQSEC2	Q5JU85	1478 aa		12.25	□□□□□ -0.45
UBE2D3-222	ENST00000508238	UGGT1	Q9NYU2	1555 aa		12.24	□□□□□ -0.45
UBE2D3-222	ENST00000508238	CEP152	O94986	1710 aa		12.23	□□□□□ -0.45
UBE2D3-222	ENST00000508238	VWDE	Q8N2E2	1590 aa		12.23	□□□□□ -0.45
UBE2D3-222	ENST00000508238	LMTK2	Q8IWU2	1503 aa		12.23	□□□□□ -0.45
UBE2D3-222	ENST00000508238	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	12.23	□□□□□ -0.45	1e-10	■■■□□ 14.9
UBE2D3-222	ENST00000508238	PRR29	P0C7W0	189 aa		12.23	□□□□□ -0.45
UBE2D3-222	ENST00000508238	MED14	O60244	1454 aa		12.22	□□□□□ -0.45
UBE2D3-222	ENST00000508238	ANKRD50	Q9ULJ7	1429 aa		12.22	□□□□□ -0.45
UBE2D3-222	ENST00000508238	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.22	□□□□□ -0.45
UBE2D3-222	ENST00000508238	PITPNM1	O00562	1244 aa		12.22	□□□□□ -0.45
UBE2D3-222	ENST00000508238	ROCK1	Q13464	1354 aa		12.21	□□□□□ -0.45
UBE2D3-222	ENST00000508238	NEURL4	Q96JN8	1562 aa		12.21	□□□□□ -0.46
UBE2D3-222	ENST00000508238	POLR1A	O95602	1720 aa	Predicted RBP	12.2	□□□□□ -0.46
UBE2D3-222	ENST00000508238	PLEKHG5	O94827	1062 aa		12.2	□□□□□ -0.46
UBE2D3-222	ENST00000508238	SP7	Q8TDD2	431 aa	Predicted RBP	12.18	□□□□□ -0.46
UBE2D3-222	ENST00000508238	NPHP4	O75161	1426 aa	Predicted RBP	12.18	□□□□□ -0.46
UBE2D3-222	ENST00000508238	UBR1	Q8IWV7	1749 aa		12.17	□□□□□ -0.46
UBE2D3-222	ENST00000508238	ARHGAP23	Q9P227	1491 aa		12.17	□□□□□ -0.46
UBE2D3-222	ENST00000508238	IDI1	Q13907	227 aa		12.17	□□□□□ -0.46
UBE2D3-222	ENST00000508238	SPOCK2	Q92563	424 aa		12.17	□□□□□ -0.46
UBE2D3-222	ENST00000508238	SLC52A1	Q9NWF4	448 aa		12.17	□□□□□ -0.46
UBE2D3-222	ENST00000508238	NOS1	P29475	1434 aa		12.17	□□□□□ -0.46
UBE2D3-222	ENST00000508238	RPRD2	Q5VT52	1461 aa	Known RBP	12.16	□□□□□ -0.46
UBE2D3-222	ENST00000508238	SLIT1	O75093	1534 aa		12.16	□□□□□ -0.46
UBE2D3-222	ENST00000508238	EFCAB6	Q5THR3	1501 aa		12.16	□□□□□ -0.46
UBE2D3-222	ENST00000508238	LTK	P29376	864 aa		12.15	□□□□□ -0.46
UBE2D3-222	ENST00000508238	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.15	□□□□□ -0.46
UBE2D3-222	ENST00000508238	KDM5A	P29375	1690 aa	Known RBP	12.15	□□□□□ -0.46
UBE2D3-222	ENST00000508238	CPS1	P31327	1500 aa		12.15	□□□□□ -0.46
UBE2D3-222	ENST00000508238	TXNDC2	Q86VQ3	553 aa		12.14	□□□□□ -0.47
UBE2D3-222	ENST00000508238	PIP4P2	Q8N4L2	257 aa		12.14	□□□□□ -0.47
UBE2D3-222	ENST00000508238	TMEM2	Q9UHN6	1383 aa		12.14	□□□□□ -0.47
UBE2D3-222	ENST00000508238	SCAF11	Q99590	1463 aa	Known RBP	12.14	□□□□□ -0.47
UBE2D3-222	ENST00000508238	IQGAP1	P46940	1657 aa		12.13	□□□□□ -0.47
UBE2D3-222	ENST00000508238	EID1	Q9Y6B2	187 aa		12.13	□□□□□ -0.47
UBE2D3-222	ENST00000508238	RRBP1	Q9P2E9	1410 aa	Known RBP	12.12	□□□□□ -0.47
UBE2D3-222	ENST00000508238	PIK3C2B	O00750	1634 aa		12.12	□□□□□ -0.47
UBE2D3-222	ENST00000508238	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.12	□□□□□ -0.47
UBE2D3-222	ENST00000508238	UNC13B	O14795	1591 aa		12.12	□□□□□ -0.47
UBE2D3-222	ENST00000508238	SYNM	O15061	1565 aa		12.12	□□□□□ -0.47
UBE2D3-222	ENST00000508238	TET3	O43151	1660 aa		12.12	□□□□□ -0.47
UBE2D3-222	ENST00000508238	UBAP1L	F5GYI3	381 aa		12.11	□□□□□ -0.47
UBE2D3-222	ENST00000508238	CREBZF	Q9NS37	354 aa		12.11	□□□□□ -0.47
UBE2D3-222	ENST00000508238	ITGAE	P38570	1179 aa		12.1	□□□□□ -0.47
UBE2D3-222	ENST00000508238	NUP155	O75694	1391 aa		12.09	□□□□□ -0.47
UBE2D3-222	ENST00000508238	GCC2	Q8IWJ2	1684 aa		12.09	□□□□□ -0.47
UBE2D3-222	ENST00000508238	TOM1	O60784	492 aa		12.08	□□□□□ -0.48
UBE2D3-222	ENST00000508238	IQGAP3	Q86VI3	1631 aa		12.08	□□□□□ -0.48
UBE2D3-222	ENST00000508238	ADGRB3	O60242	1522 aa		12.06	□□□□□ -0.48
UBE2D3-222	ENST00000508238	STRCP1	A6NGW2	1772 aa		12.06	□□□□□ -0.48
UBE2D3-222	ENST00000508238	HDGF	P51858	240 aa	Known RBP	12.06	□□□□□ -0.48
UBE2D3-222	ENST00000508238		E9PCH4	1651 aa		12.06	□□□□□ -0.48
UBE2D3-222	ENST00000508238	LRRC7	Q96NW7	1537 aa		12.06	□□□□□ -0.48
UBE2D3-222	ENST00000508238	ZFYVE9	O95405	1425 aa		12.04	□□□□□ -0.48
UBE2D3-222	ENST00000508238	HAX1	O00165	279 aa		12.04	□□□□□ -0.48
UBE2D3-222	ENST00000508238	KCNA6	P17658	529 aa		12.04	□□□□□ -0.48
UBE2D3-222	ENST00000508238	TMEM131L	A2VDJ0	1609 aa		12.04	□□□□□ -0.48
UBE2D3-222	ENST00000508238	NAIP	Q13075	1403 aa		12.03	□□□□□ -0.48
UBE2D3-222	ENST00000508238	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
UBE2D3-222	ENST00000508238	SLC26A8	Q96RN1	970 aa		12.02	□□□□□ -0.49
UBE2D3-222	ENST00000508238	PLEKHG1	Q9ULL1	1385 aa		12.02	□□□□□ -0.49
UBE2D3-222	ENST00000508238	MYO5B	Q9ULV0	1848 aa		12.02	□□□□□ -0.49
UBE2D3-222	ENST00000508238	FXR2	P51116	673 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
UBE2D3-222	ENST00000508238	HFM1	A2PYH4	1435 aa		12.01	□□□□□ -0.49
UBE2D3-222	ENST00000508238	RIMS2	Q9UQ26	1411 aa		12.01	□□□□□ -0.49
UBE2D3-222	ENST00000508238	ALK	Q9UM73	1620 aa		12	□□□□□ -0.49
UBE2D3-222	ENST00000508238	MNX1	P50219	401 aa	Predicted RBP	12	□□□□□ -0.49
UBE2D3-222	ENST00000508238	TBX22	Q9Y458	520 aa		12	□□□□□ -0.49
UBE2D3-222	ENST00000508238	PIP4K2B	P78356	416 aa		11.99	□□□□□ -0.49
UBE2D3-222	ENST00000508238	CHADL	Q6NUI6	762 aa		11.99	□□□□□ -0.49
UBE2D3-222	ENST00000508238	PPP1R15A	O75807	674 aa	Predicted RBP	11.98	□□□□□ -0.49
UBE2D3-222	ENST00000508238	CHGA	P10645	457 aa	Known RBP	11.98	□□□□□ -0.49
UBE2D3-222	ENST00000508238	HSPA1L	P34931	641 aa		11.98	□□□□□ -0.49
UBE2D3-222	ENST00000508238	XIRP1	Q702N8	1843 aa	Known RBP	11.97	□□□□□ -0.49
UBE2D3-222	ENST00000508238	BCAN	Q96GW7	911 aa		11.97	□□□□□ -0.49
UBE2D3-222	ENST00000508238	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.97	□□□□□ -0.49
UBE2D3-222	ENST00000508238	NKTR	P30414	1462 aa	Known RBP	11.96	□□□□□ -0.49
UBE2D3-222	ENST00000508238	TMEM94	Q12767	1356 aa		11.96	□□□□□ -0.49
UBE2D3-222	ENST00000508238	NUBP1	P53384	320 aa		11.96	□□□□□ -0.49
UBE2D3-222	ENST00000508238	PROSER2	Q86WR7	435 aa	Predicted RBP	11.96	□□□□□ -0.49
UBE2D3-222	ENST00000508238	SPHKAP	Q2M3C7	1700 aa		11.96	□□□□□ -0.49
UBE2D3-222	ENST00000508238	NWD1	Q149M9	1564 aa		11.96	□□□□□ -0.5
UBE2D3-222	ENST00000508238	ADAMTS13	Q76LX8	1427 aa		11.95	□□□□□ -0.5
UBE2D3-222	ENST00000508238	CHD2	O14647	1828 aa	Known RBP	11.95	□□□□□ -0.5
UBE2D3-222	ENST00000508238	PIK3R4	Q99570	1358 aa		11.95	□□□□□ -0.5
UBE2D3-222	ENST00000508238	DISP3	Q9P2K9	1392 aa		11.95	□□□□□ -0.5
UBE2D3-222	ENST00000508238	FAM135B	Q49AJ0	1406 aa		11.94	□□□□□ -0.5
UBE2D3-222	ENST00000508238	NCOA3	Q9Y6Q9	1424 aa		11.94	□□□□□ -0.5
UBE2D3-222	ENST00000508238	ECM2	O94769	699 aa	Predicted RBP	11.93	□□□□□ -0.5
UBE2D3-222	ENST00000508238	PRKAR2A	P13861	404 aa	Known RBP	11.93	□□□□□ -0.5
UBE2D3-222	ENST00000508238	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.93	□□□□□ -0.5
UBE2D3-222	ENST00000508238	TRIM52	Q96A61	297 aa		11.93	□□□□□ -0.5
UBE2D3-222	ENST00000508238	DIP2A	Q14689	1571 aa		11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms