RNA–Protein interactions for RNA: ENST00000507536.1

PDGFRA-205, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 1,146 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-205ENST00000507536 ABCC5O15440 1437 aa16.37■□□□□ 0.21
PDGFRA-205ENST00000507536 SOCS7O14512 581 aa16.37■□□□□ 0.21
PDGFRA-205ENST00000507536 MED1Q15648 1581 aaPredicted RBP16.37■□□□□ 0.21
PDGFRA-205ENST00000507536 KDM5AP29375 1690 aaKnown RBP16.37■□□□□ 0.21
PDGFRA-205ENST00000507536 ANKLE2Q86XL3 938 aa16.36■□□□□ 0.21
PDGFRA-205ENST00000507536 THEMISQ8N1K5 641 aaPredicted RBP16.36■□□□□ 0.21
PDGFRA-205ENST00000507536 ERBINQ96RT1 1412 aa16.36■□□□□ 0.21
PDGFRA-205ENST00000507536 ARHGAP23Q9P227 1491 aa16.35■□□□□ 0.21
PDGFRA-205ENST00000507536 SLIT1O75093 1534 aa16.35■□□□□ 0.21
PDGFRA-205ENST00000507536 KIF15Q9NS87 1388 aa16.34■□□□□ 0.21
PDGFRA-205ENST00000507536 DAPK1P53355 1430 aa16.34■□□□□ 0.21
PDGFRA-205ENST00000507536 ARHGAP31Q2M1Z3 1444 aa16.34■□□□□ 0.21
PDGFRA-205ENST00000507536 LRRC7Q96NW7 1537 aa16.34■□□□□ 0.21
PDGFRA-205ENST00000507536 SPDYE4A6NLX3 237 aa16.33■□□□□ 0.2
PDGFRA-205ENST00000507536 FGD6Q6ZV73 1430 aa16.32■□□□□ 0.2
PDGFRA-205ENST00000507536 SCAF11Q99590 1463 aaKnown RBP16.32■□□□□ 0.2
PDGFRA-205ENST00000507536 MYO5BQ9ULV0 1848 aa16.32■□□□□ 0.2
PDGFRA-205ENST00000507536 HSPA1LP34931 641 aa16.31■□□□□ 0.2
PDGFRA-205ENST00000507536 LMTK2Q8IWU2 1503 aa16.3■□□□□ 0.2
PDGFRA-205ENST00000507536 SPDYE1Q8NFV5 336 aaPredicted RBP16.28■□□□□ 0.2
PDGFRA-205ENST00000507536 EFCAB6Q5THR3 1501 aa16.28■□□□□ 0.2
PDGFRA-205ENST00000507536 PIP4K2BP78356 416 aa16.27■□□□□ 0.2
PDGFRA-205ENST00000507536 TOM1O60784 492 aa16.26■□□□□ 0.19
PDGFRA-205ENST00000507536 LTKP29376 864 aa16.26■□□□□ 0.19
PDGFRA-205ENST00000507536 ADGRL2O95490 1459 aa16.25■□□□□ 0.19
PDGFRA-205ENST00000507536 RRP7BPQ9NSQ0 103 aa16.25■□□□□ 0.19
PDGFRA-205ENST00000507536 CLEC11AQ9Y240 323 aa16.25■□□□□ 0.19
PDGFRA-205ENST00000507536 TET3O43151 1660 aa16.24■□□□□ 0.19
PDGFRA-205ENST00000507536 PIP4P2Q8N4L2 257 aa16.23■□□□□ 0.19
PDGFRA-205ENST00000507536 GCC2Q8IWJ2 1684 aa16.23■□□□□ 0.19
PDGFRA-205ENST00000507536 ADGRB3O60242 1522 aa16.23■□□□□ 0.19
PDGFRA-205ENST00000507536 NOS1P29475 1434 aa16.21■□□□□ 0.19
PDGFRA-205ENST00000507536 TMEM2Q9UHN6 1383 aa16.21■□□□□ 0.19
PDGFRA-205ENST00000507536 ANKRD30AQ9BXX3 1397 aa16.2■□□□□ 0.18
PDGFRA-205ENST00000507536 NWD1Q149M9 1564 aa16.2■□□□□ 0.18
PDGFRA-205ENST00000507536 UNC13BO14795 1591 aa16.19■□□□□ 0.18
PDGFRA-205ENST00000507536 FXR2P51116 673 aaKnown RBP eCLIP16.19■□□□□ 0.18
PDGFRA-205ENST00000507536 CHD2O14647 1828 aaKnown RBP16.19■□□□□ 0.18
PDGFRA-205ENST00000507536 KANK1Q14678 1352 aa16.18■□□□□ 0.18
PDGFRA-205ENST00000507536 TXNDC2Q86VQ3 553 aa16.18■□□□□ 0.18
PDGFRA-205ENST00000507536 TMEM131LA2VDJ0 1609 aa16.17■□□□□ 0.18
PDGFRA-205ENST00000507536 CHIC2Q9UKJ5 165 aa16.17■□□□□ 0.18
PDGFRA-205ENST00000507536 E9PCH4 1651 aa16.17■□□□□ 0.18
PDGFRA-205ENST00000507536 ROBO1Q9Y6N7 1651 aa16.16■□□□□ 0.18
PDGFRA-205ENST00000507536 IDI1Q13907 227 aa16.15■□□□□ 0.18
PDGFRA-205ENST00000507536 RPRD2Q5VT52 1461 aaKnown RBP16.15■□□□□ 0.18
PDGFRA-205ENST00000507536 IQGAP3Q86VI3 1631 aa16.12■□□□□ 0.17
PDGFRA-205ENST00000507536 ZFYVE9O95405 1425 aa16.12■□□□□ 0.17
PDGFRA-205ENST00000507536 ANKRD50Q9ULJ7 1429 aa16.12■□□□□ 0.17
PDGFRA-205ENST00000507536 NKTRP30414 1462 aaKnown RBP16.11■□□□□ 0.17
PDGFRA-205ENST00000507536 EID1Q9Y6B2 187 aa16.11■□□□□ 0.17
PDGFRA-205ENST00000507536 TMEM94Q12767 1356 aa16.09■□□□□ 0.17
PDGFRA-205ENST00000507536 FAM135BQ49AJ0 1406 aa16.08■□□□□ 0.16
PDGFRA-205ENST00000507536 PHLPP1O60346 1717 aa16.06■□□□□ 0.16
PDGFRA-205ENST00000507536 SLC26A8Q96RN1 970 aa16.06■□□□□ 0.16
PDGFRA-205ENST00000507536 STAG3Q9UJ98 1225 aa16.06■□□□□ 0.16
PDGFRA-205ENST00000507536 KCNA6P17658 529 aa16.05■□□□□ 0.16
PDGFRA-205ENST00000507536 FAM50AQ14320 339 aaKnown RBP16.05■□□□□ 0.16
PDGFRA-205ENST00000507536 SLC52A1Q9NWF4 448 aa16.05■□□□□ 0.16
PDGFRA-205ENST00000507536 SPHKAPQ2M3C7 1700 aa16.04■□□□□ 0.16
PDGFRA-205ENST00000507536 RIMS2Q9UQ26 1411 aa16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 PLEKHG1Q9ULL1 1385 aa16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 PRR29P0C7W0 189 aa16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 PROM2Q8N271 834 aa16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 RBM33Q96EV2 1170 aaKnown RBP16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 RGS17Q9UGC6 210 aaPredicted RBP16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 DIP2AQ14689 1571 aa16.03■□□□□ 0.16
PDGFRA-205ENST00000507536 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.02■□□□□ 0.16
PDGFRA-205ENST00000507536 COL16A1Q07092 1604 aaPredicted RBP16.02■□□□□ 0.16
PDGFRA-205ENST00000507536 NRXN3Q9Y4C0 1643 aa16.02■□□□□ 0.16
PDGFRA-205ENST00000507536 ROCK1Q13464 1354 aa16.01■□□□□ 0.15
PDGFRA-205ENST00000507536 ADAMTS13Q76LX8 1427 aa16.01■□□□□ 0.15
PDGFRA-205ENST00000507536 PRKAR2AP13861 404 aaKnown RBP16■□□□□ 0.15
PDGFRA-205ENST00000507536 FKBP8Q14318 412 aa16■□□□□ 0.15
PDGFRA-205ENST00000507536 PROSER2Q86WR7 435 aaPredicted RBP15.99■□□□□ 0.15
PDGFRA-205ENST00000507536 SETD1AO15047 1707 aaKnown RBP15.99■□□□□ 0.15
PDGFRA-205ENST00000507536 XRN1Q8IZH2 1706 aaKnown RBP15.99■□□□□ 0.15
PDGFRA-205ENST00000507536 CHADLQ6NUI6 762 aa15.96■□□□□ 0.15
PDGFRA-205ENST00000507536 MSH6P52701 1360 aa15.96■□□□□ 0.15
PDGFRA-205ENST00000507536 SHPRHQ149N8 1683 aa15.95■□□□□ 0.14
PDGFRA-205ENST00000507536 TRPM2O94759 1503 aa15.94■□□□□ 0.14
PDGFRA-205ENST00000507536 AHDC1Q5TGY3 1603 aaPredicted RBP15.94■□□□□ 0.14
PDGFRA-205ENST00000507536 SETBP1Q9Y6X0 1596 aa15.94■□□□□ 0.14
PDGFRA-205ENST00000507536 CLTCL1P53675 1640 aa15.93■□□□□ 0.14
PDGFRA-205ENST00000507536 PTPRUQ92729 1446 aa15.93■□□□□ 0.14
PDGFRA-205ENST00000507536 NCOA3Q9Y6Q9 1424 aa15.93■□□□□ 0.14
PDGFRA-205ENST00000507536 KIF1BO60333 1816 aa15.92■□□□□ 0.14
PDGFRA-205ENST00000507536 TBX22Q9Y458 520 aa15.92■□□□□ 0.14
PDGFRA-205ENST00000507536 NALCNQ8IZF0 1738 aa15.91■□□□□ 0.14
PDGFRA-205ENST00000507536 LRP6O75581 1613 aa15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 NHSL1Q5SYE7 1610 aa15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 PIK3R4Q99570 1358 aa15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 PPP1R15AO75807 674 aaPredicted RBP15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 NUTM2DQ5VT03 806 aaPredicted RBP15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 POTEAQ6S8J7 498 aa15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 BCANQ96GW7 911 aa15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 SLAIN2Q9P270 581 aa15.9■□□□□ 0.14
PDGFRA-205ENST00000507536 NUP155O75694 1391 aa15.89■□□□□ 0.13
PDGFRA-205ENST00000507536 NEXMIFQ5QGS0 1516 aa15.89■□□□□ 0.13
PDGFRA-205ENST00000507536 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms