RNA–Protein interactions for RNA: ENST00000505615.1

VCAN-206, Transcript of versican, humanhuman

TSL 5

Gene VCAN, Length 810 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-206ENST00000505615 COLQQ9Y215 455 aaPredicted RBP11.78□□□□□ -0.52
VCAN-206ENST00000505615 RNF17Q9BXT8 1623 aaKnown RBP11.78□□□□□ -0.52
VCAN-206ENST00000505615 DEPDC5O75140 1603 aa11.76□□□□□ -0.53
VCAN-206ENST00000505615 ADGBQ8N7X0 1667 aa11.76□□□□□ -0.53
VCAN-206ENST00000505615 PCDHB13Q9Y5F0 798 aa11.76□□□□□ -0.53
VCAN-206ENST00000505615 SYNMO15061 1565 aa11.75□□□□□ -0.53
VCAN-206ENST00000505615 SPAG9O60271 1321 aaKnown RBP11.75□□□□□ -0.53
VCAN-206ENST00000505615 MED14O60244 1454 aa11.75□□□□□ -0.53
VCAN-206ENST00000505615 IER5LQ5T953 404 aa11.74□□□□□ -0.53
VCAN-206ENST00000505615 TRIM35Q9UPQ4 493 aa11.74□□□□□ -0.53
VCAN-206ENST00000505615 LRRC7Q96NW7 1537 aa11.74□□□□□ -0.53
VCAN-206ENST00000505615 IQGAP1P46940 1657 aa11.74□□□□□ -0.53
VCAN-206ENST00000505615 SETD1AO15047 1707 aaKnown RBP11.74□□□□□ -0.53
VCAN-206ENST00000505615 CCDC18Q5T9S5 1454 aa11.73□□□□□ -0.53
VCAN-206ENST00000505615 PCDH10Q9P2E7 1040 aa11.73□□□□□ -0.53
VCAN-206ENST00000505615 XIRP1Q702N8 1843 aaKnown RBP11.72□□□□□ -0.53
VCAN-206ENST00000505615 NPHP4O75161 1426 aaPredicted RBP11.72□□□□□ -0.53
VCAN-206ENST00000505615 TNRQ92752 1358 aa11.72□□□□□ -0.53
VCAN-206ENST00000505615 GGT6Q6P531 493 aa11.72□□□□□ -0.53
VCAN-206ENST00000505615 IFNL1Q8IU54 200 aa11.72□□□□□ -0.53
VCAN-206ENST00000505615 GPATCH8Q9UKJ3 1502 aaKnown RBP11.71□□□□□ -0.53
VCAN-206ENST00000505615 PZPP20742 1482 aa11.71□□□□□ -0.53
VCAN-206ENST00000505615 KIAA1107Q9UPP5 1409 aa11.71□□□□□ -0.53
VCAN-206ENST00000505615 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.7□□□□□ -0.54
VCAN-206ENST00000505615 HNRNPMP52272 730 aaKnown RBP eCLIP11.7□□□□□ -0.54
VCAN-206ENST00000505615 FKBP8Q14318 412 aa11.7□□□□□ -0.54
VCAN-206ENST00000505615 FAM212AQ96EL1 285 aa11.7□□□□□ -0.54
VCAN-206ENST00000505615 ZC3H13Q5T200 1668 aaKnown RBP11.7□□□□□ -0.54
VCAN-206ENST00000505615 CASKIN1Q8WXD9 1431 aa11.69□□□□□ -0.54
VCAN-206ENST00000505615 POTEAQ6S8J7 498 aa11.69□□□□□ -0.54
VCAN-206ENST00000505615 FAM135AQ9P2D6 1515 aa11.69□□□□□ -0.54
VCAN-206ENST00000505615 PLEKHH2Q8IVE3 1493 aa11.69□□□□□ -0.54
VCAN-206ENST00000505615 UGGT1Q9NYU2 1555 aa11.68□□□□□ -0.54
VCAN-206ENST00000505615 SEC24BO95487 1268 aa11.68□□□□□ -0.54
VCAN-206ENST00000505615 FBXO31Q5XUX0 539 aaPredicted RBP11.68□□□□□ -0.54
VCAN-206ENST00000505615 ZNF777Q9ULD5 760 aaPredicted RBP11.68□□□□□ -0.54
VCAN-206ENST00000505615 KDM5DQ9BY66 1539 aa11.68□□□□□ -0.54
VCAN-206ENST00000505615 ANKLE2Q86XL3 938 aa11.67□□□□□ -0.54
VCAN-206ENST00000505615 NLRP1Q9C000 1473 aa11.67□□□□□ -0.54
VCAN-206ENST00000505615 FAM163AQ96GL9 167 aaPredicted RBP11.66□□□□□ -0.54
VCAN-206ENST00000505615 MIA2Q96PC5 1412 aa11.65□□□□□ -0.54
VCAN-206ENST00000505615 FYCO1Q9BQS8 1478 aa11.63□□□□□ -0.55
VCAN-206ENST00000505615 MBD5Q9P267 1494 aa11.63□□□□□ -0.55
VCAN-206ENST00000505615 THEMISQ8N1K5 641 aaPredicted RBP11.63□□□□□ -0.55
VCAN-206ENST00000505615 DHX29Q7Z478 1369 aaKnown RBP11.63□□□□□ -0.55
VCAN-206ENST00000505615 RTEL1-TNFRSF6BF6WH68 1400 aa11.62□□□□□ -0.55
VCAN-206ENST00000505615 UBTFP17480 764 aaKnown RBP11.62□□□□□ -0.55
VCAN-206ENST00000505615 TMEM106CQ9BVX2 250 aa11.62□□□□□ -0.55
VCAN-206ENST00000505615 SRCAPQ6ZRS2 3230 aa11.62□□□□□ -0.55
VCAN-206ENST00000505615 TIAM1Q13009 1591 aa11.61□□□□□ -0.55
VCAN-206ENST00000505615 FAM135BQ49AJ0 1406 aa11.6□□□□□ -0.55
VCAN-206ENST00000505615 UBR1Q8IWV7 1749 aa11.6□□□□□ -0.55
VCAN-206ENST00000505615 ROBO1Q9Y6N7 1651 aa11.6□□□□□ -0.55
VCAN-206ENST00000505615 CFDP1Q9UEE9 299 aaPredicted RBP11.6□□□□□ -0.55
VCAN-206ENST00000505615 CFAP65Q6ZU64 1925 aaKnown RBP11.59□□□□□ -0.55
VCAN-206ENST00000505615 IRX5P78411 483 aaPredicted RBP11.59□□□□□ -0.55
VCAN-206ENST00000505615 CCNB3Q8WWL7 1395 aa11.58□□□□□ -0.56
VCAN-206ENST00000505615 ZNF644Q9H582 1327 aaPredicted RBP11.58□□□□□ -0.56
VCAN-206ENST00000505615 KIF3BO15066 747 aa11.57□□□□□ -0.56
VCAN-206ENST00000505615 ERVK-7P63135 1459 aa11.57□□□□□ -0.56
VCAN-206ENST00000505615 NCOA2Q15596 1464 aa11.57□□□□□ -0.56
VCAN-206ENST00000505615 SCAF11Q99590 1463 aaKnown RBP11.57□□□□□ -0.56
VCAN-206ENST00000505615 ARHGAP23Q9P227 1491 aa11.57□□□□□ -0.56
VCAN-206ENST00000505615 ABCC3O15438 1527 aa11.56□□□□□ -0.56
VCAN-206ENST00000505615 SLIT1O75093 1534 aa11.55□□□□□ -0.56
VCAN-206ENST00000505615 MAP3K1Q13233 1512 aa11.55□□□□□ -0.56
VCAN-206ENST00000505615 WASHC2CQ9Y4E1 1318 aa11.55□□□□□ -0.56
VCAN-206ENST00000505615 MROH1Q8NDA8 1641 aa11.54□□□□□ -0.56
VCAN-206ENST00000505615 PLCG2P16885 1265 aa11.54□□□□□ -0.56
VCAN-206ENST00000505615 UPF1Q92900 1129 aaKnown RBP eCLIP11.54□□□□□ -0.56
VCAN-206ENST00000505615 CCDC141Q6ZP82 1450 aa11.54□□□□□ -0.56
VCAN-206ENST00000505615 CEP152O94986 1710 aa11.54□□□□□ -0.56
VCAN-206ENST00000505615 PHLPP1O60346 1717 aa11.53□□□□□ -0.56
VCAN-206ENST00000505615 PYGBP11216 843 aa11.53□□□□□ -0.56
VCAN-206ENST00000505615 FBXO3Q9UK99 471 aa11.53□□□□□ -0.56
VCAN-206ENST00000505615 LTKP29376 864 aa11.52□□□□□ -0.57
VCAN-206ENST00000505615 SLAIN1Q8ND83 568 aa11.52□□□□□ -0.57
VCAN-206ENST00000505615 TMEM94Q12767 1356 aa11.51□□□□□ -0.57
VCAN-206ENST00000505615 LRRC9Q6ZRR7 1453 aa11.51□□□□□ -0.57
VCAN-206ENST00000505615 LRP6O75581 1613 aa11.5□□□□□ -0.57
VCAN-206ENST00000505615 COL16A1Q07092 1604 aaPredicted RBP11.5□□□□□ -0.57
VCAN-206ENST00000505615 DCAF8Q5TAQ9 597 aa11.5□□□□□ -0.57
VCAN-206ENST00000505615 MTUS2Q5JR59 1369 aa11.5□□□□□ -0.57
VCAN-206ENST00000505615 CAMSAP2Q08AD1 1489 aa11.5□□□□□ -0.57
VCAN-206ENST00000505615 EHBP1L1Q8N3D4 1523 aa11.5□□□□□ -0.57
VCAN-206ENST00000505615 NWD1Q149M9 1564 aa11.49□□□□□ -0.57
VCAN-206ENST00000505615 EIF2AK4Q9P2K8 1649 aaKnown RBP11.49□□□□□ -0.57
VCAN-206ENST00000505615 OCEL1Q9H607 264 aa11.48□□□□□ -0.57
VCAN-206ENST00000505615 PCDHB8Q9UN66 801 aa11.48□□□□□ -0.57
VCAN-206ENST00000505615 JCADQ9P266 1359 aa11.48□□□□□ -0.57
VCAN-206ENST00000505615 CEP162Q5TB80 1403 aa11.48□□□□□ -0.57
VCAN-206ENST00000505615 ARHGEF5Q12774 1597 aa11.48□□□□□ -0.57
VCAN-206ENST00000505615 PIK3C2BO00750 1634 aa11.47□□□□□ -0.57
VCAN-206ENST00000505615 ST18O60284 1047 aa11.47□□□□□ -0.57
VCAN-206ENST00000505615 PRDM15P57071 1507 aaPredicted RBP11.46□□□□□ -0.57
VCAN-206ENST00000505615 TXNDC2Q86VQ3 553 aa11.46□□□□□ -0.57
VCAN-206ENST00000505615 TET3O43151 1660 aa11.46□□□□□ -0.58
VCAN-206ENST00000505615 NKTRP30414 1462 aaKnown RBP11.45□□□□□ -0.58
VCAN-206ENST00000505615 KDM5AP29375 1690 aaKnown RBP11.45□□□□□ -0.58
VCAN-206ENST00000505615 SHPRHQ149N8 1683 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms