RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 NUTM2EB1AL46 878 aaPredicted RBP20.41■□□□□ 0.86
LSM6-204ENST00000504181 TSPY4P0CV99 314 aa20.41■□□□□ 0.86
LSM6-204ENST00000504181 TSPY10P0CW01 314 aa20.41■□□□□ 0.86
LSM6-204ENST00000504181 NUTM2AQ8IVF1 878 aaPredicted RBP20.41■□□□□ 0.86
LSM6-204ENST00000504181 AFF2P51816 1311 aa20.41■□□□□ 0.86
LSM6-204ENST00000504181 NUTM2DQ5VT03 806 aaPredicted RBP20.39■□□□□ 0.85
LSM6-204ENST00000504181 ARHGAP31Q2M1Z3 1444 aa20.38■□□□□ 0.85
LSM6-204ENST00000504181 ZRANB1Q9UGI0 708 aa20.36■□□□□ 0.85
LSM6-204ENST00000504181 ADGRB3O60242 1522 aa20.34■□□□□ 0.85
LSM6-204ENST00000504181 BCANQ96GW7 911 aa20.34■□□□□ 0.85
LSM6-204ENST00000504181 EP400Q96L91 3159 aa20.33■□□□□ 0.85
LSM6-204ENST00000504181 DUOX2Q9NRD8 1548 aa20.32■□□□□ 0.84
LSM6-204ENST00000504181 NHSL1Q5SYE7 1610 aa20.32■□□□□ 0.84
LSM6-204ENST00000504181 RBM6P78332 1123 aaKnown RBP20.31■□□□□ 0.84
LSM6-204ENST00000504181 ATAD2Q6PL18 1390 aa20.31■□□□□ 0.84
LSM6-204ENST00000504181 GCC2Q8IWJ2 1684 aa20.3■□□□□ 0.84
LSM6-204ENST00000504181 C14orf37Q86TY3 774 aa20.3■□□□□ 0.84
LSM6-204ENST00000504181 QTRT2Q9H974 415 aaKnown RBP20.3■□□□□ 0.84
LSM6-204ENST00000504181 IDI1Q13907 227 aa20.28■□□□□ 0.84
LSM6-204ENST00000504181 C8orf37Q96NL8 207 aa20.27■□□□□ 0.84
LSM6-204ENST00000504181 CROCC2H7BZ55 1655 aa20.26■□□□□ 0.83
LSM6-204ENST00000504181 NCOA3Q9Y6Q9 1424 aa20.26■□□□□ 0.83
LSM6-204ENST00000504181 CADPS2Q86UW7 1296 aa20.24■□□□□ 0.83
LSM6-204ENST00000504181 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.24■□□□□ 0.831e-6■■■■□ 22.6
LSM6-204ENST00000504181 ASXL1Q8IXJ9 1541 aa20.23■□□□□ 0.83
LSM6-204ENST00000504181 ATF3P18847 181 aa20.23■□□□□ 0.83
LSM6-204ENST00000504181 BRINP3Q76B58 766 aa20.23■□□□□ 0.83
LSM6-204ENST00000504181 SETD5Q9C0A6 1442 aa20.21■□□□□ 0.83
LSM6-204ENST00000504181 LRP5O75197 1615 aa20.21■□□□□ 0.83
LSM6-204ENST00000504181 PLEKHG1Q9ULL1 1385 aa20.21■□□□□ 0.83
LSM6-204ENST00000504181 ZFYVE9O95405 1425 aa20.19■□□□□ 0.82
LSM6-204ENST00000504181 ERBINQ96RT1 1412 aa20.19■□□□□ 0.82
LSM6-204ENST00000504181 NGLY1Q96IV0 654 aa20.19■□□□□ 0.82
LSM6-204ENST00000504181 C19orf44Q9H6X5 657 aa20.19■□□□□ 0.82
LSM6-204ENST00000504181 KANK1Q14678 1352 aa20.18■□□□□ 0.82
LSM6-204ENST00000504181 LMTK2Q8IWU2 1503 aa20.17■□□□□ 0.82
LSM6-204ENST00000504181 KIF15Q9NS87 1388 aa20.17■□□□□ 0.82
LSM6-204ENST00000504181 NOS1P29475 1434 aa20.17■□□□□ 0.82
LSM6-204ENST00000504181 TMEM131LA2VDJ0 1609 aa20.16■□□□□ 0.82
LSM6-204ENST00000504181 PPP1R15AO75807 674 aaPredicted RBP20.15■□□□□ 0.82
LSM6-204ENST00000504181 RIMS2Q9UQ26 1411 aa20.15■□□□□ 0.82
LSM6-204ENST00000504181 PNPLA6Q8IY17 1366 aa20.14■□□□□ 0.81
LSM6-204ENST00000504181 ADAMTS2O95450 1211 aa20.12■□□□□ 0.81
LSM6-204ENST00000504181 LRRC59Q96AG4 307 aaKnown RBP20.12■□□□□ 0.81
LSM6-204ENST00000504181 TBX22Q9Y458 520 aa20.12■□□□□ 0.81
LSM6-204ENST00000504181 MARF1Q9Y4F3 1742 aaKnown RBP20.11■□□□□ 0.81
LSM6-204ENST00000504181 ADAMTS13Q76LX8 1427 aa20.1■□□□□ 0.81
LSM6-204ENST00000504181 RRP7BPQ9NSQ0 103 aa20.1■□□□□ 0.81
LSM6-204ENST00000504181 BRWD3Q6RI45 1802 aa20.1■□□□□ 0.81
LSM6-204ENST00000504181 DCCP43146 1447 aa20.1■□□□□ 0.81
LSM6-204ENST00000504181 MST1RQ04912 1400 aa20.1■□□□□ 0.81
LSM6-204ENST00000504181 TRPM2O94759 1503 aa20.09■□□□□ 0.81
LSM6-204ENST00000504181 DDX17Q92841 729 aaKnown RBP20.09■□□□□ 0.81
LSM6-204ENST00000504181 MYOM3Q5VTT5 1437 aa20.09■□□□□ 0.81
LSM6-204ENST00000504181 CCDC125Q86Z20 511 aa20.08■□□□□ 0.81
LSM6-204ENST00000504181 SLC52A1Q9NWF4 448 aa20.08■□□□□ 0.81
LSM6-204ENST00000504181 USP21Q9UK80 565 aa20.08■□□□□ 0.81
LSM6-204ENST00000504181 XRN1Q8IZH2 1706 aaKnown RBP20.07■□□□□ 0.8
LSM6-204ENST00000504181 TRPC5Q9UL62 973 aaPredicted RBP20.07■□□□□ 0.8
LSM6-204ENST00000504181 NALCNQ8IZF0 1738 aa20.07■□□□□ 0.8
LSM6-204ENST00000504181 ATRNO75882 1429 aa20.06■□□□□ 0.8
LSM6-204ENST00000504181 PIK3R4Q99570 1358 aa20.05■□□□□ 0.8
LSM6-204ENST00000504181 PTPRUQ92729 1446 aa20.04■□□□□ 0.8
LSM6-204ENST00000504181 HDGFP51858 240 aaKnown RBP20.04■□□□□ 0.8
LSM6-204ENST00000504181 UNC13BO14795 1591 aa20.04■□□□□ 0.8
LSM6-204ENST00000504181 LAMC1P11047 1609 aa20.02■□□□□ 0.8
LSM6-204ENST00000504181 AMOTL2Q9Y2J4 779 aa20.02■□□□□ 0.8
LSM6-204ENST00000504181 ABCC5O15440 1437 aa20.01■□□□□ 0.79
LSM6-204ENST00000504181 COL22A1Q8NFW1 1626 aaPredicted RBP20■□□□□ 0.79
LSM6-204ENST00000504181 RPRD2Q5VT52 1461 aaKnown RBP19.99■□□□□ 0.79
LSM6-204ENST00000504181 PTPN23Q9H3S7 1636 aa19.99■□□□□ 0.79
LSM6-204ENST00000504181 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.99■□□□□ 0.79
LSM6-204ENST00000504181 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.99■□□□□ 0.79
LSM6-204ENST00000504181 NRXN3Q9Y4C0 1643 aa19.98■□□□□ 0.79
LSM6-204ENST00000504181 BLMP54132 1417 aaPredicted RBP19.98■□□□□ 0.79
LSM6-204ENST00000504181 PTCH1Q13635 1447 aa19.98■□□□□ 0.79
LSM6-204ENST00000504181 CHGAP10645 457 aaKnown RBP19.97■□□□□ 0.79
LSM6-204ENST00000504181 DEFB132Q7Z7B7 95 aa19.97■□□□□ 0.79
LSM6-204ENST00000504181 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
LSM6-204ENST00000504181 SPHKAPQ2M3C7 1700 aa19.96■□□□□ 0.79
LSM6-204ENST00000504181 DAPK1P53355 1430 aa19.94■□□□□ 0.78
LSM6-204ENST00000504181 E9PCH4 1651 aa19.94■□□□□ 0.78
LSM6-204ENST00000504181 GLI3P10071 1580 aa19.92■□□□□ 0.78
LSM6-204ENST00000504181 ADGRL3Q9HAR2 1447 aa19.92■□□□□ 0.78
LSM6-204ENST00000504181 BCL9LQ86UU0 1499 aa19.92■□□□□ 0.78
LSM6-204ENST00000504181 PSDA5PKW4 1024 aaPredicted RBP19.91■□□□□ 0.78
LSM6-204ENST00000504181 C1orf167Q5SNV9 1468 aa19.89■□□□□ 0.77
LSM6-204ENST00000504181 ANKRD30AQ9BXX3 1397 aa19.89■□□□□ 0.77
LSM6-204ENST00000504181 CHIC2Q9UKJ5 165 aa19.89■□□□□ 0.77
LSM6-204ENST00000504181 SF3B2Q13435 895 aaKnown RBP19.88■□□□□ 0.77
LSM6-204ENST00000504181 GJD4Q96KN9 370 aaPredicted RBP19.88■□□□□ 0.77
LSM6-204ENST00000504181 SOS2Q07890 1332 aaPredicted RBP19.87■□□□□ 0.77
LSM6-204ENST00000504181 HRCP23327 699 aa19.86■□□□□ 0.77
LSM6-204ENST00000504181 KANK4Q5T7N3 995 aaPredicted RBP19.86■□□□□ 0.77
LSM6-204ENST00000504181 IQGAP3Q86VI3 1631 aa19.86■□□□□ 0.77
LSM6-204ENST00000504181 MYOM2P54296 1465 aa19.86■□□□□ 0.77
LSM6-204ENST00000504181 RALGAPBQ86X10 1494 aa19.84■□□□□ 0.77
LSM6-204ENST00000504181 ORAI2Q96SN7 254 aa19.82■□□□□ 0.76
LSM6-204ENST00000504181 YY1P25490 414 aa19.81■□□□□ 0.76
LSM6-204ENST00000504181 METP08581 1390 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms