RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MYOM2P54296 1465 aa16.24■□□□□ 0.19
NUP54-202ENST00000502850 BCANQ96GW7 911 aa16.23■□□□□ 0.19
NUP54-202ENST00000502850 TMC1Q8TDI8 760 aa16.23■□□□□ 0.19
NUP54-202ENST00000502850 EIF3AQ14152 1382 aaKnown RBP16.22■□□□□ 0.19
NUP54-202ENST00000502850 SMG6Q86US8 1419 aaKnown RBP16.22■□□□□ 0.19
NUP54-202ENST00000502850 NBPF1Q3BBV0 1214 aa16.22■□□□□ 0.19
NUP54-202ENST00000502850 PARD3Q8TEW0 1356 aa16.22■□□□□ 0.19
NUP54-202ENST00000502850 SCAF11Q99590 1463 aaKnown RBP16.22■□□□□ 0.19
NUP54-202ENST00000502850 MLH3Q9UHC1 1453 aa16.22■□□□□ 0.19
NUP54-202ENST00000502850 IFT172Q9UG01 1749 aa16.21■□□□□ 0.19
NUP54-202ENST00000502850 SLC24A1O60721 1099 aa16.21■□□□□ 0.19
NUP54-202ENST00000502850 FER1L4A9Z1Z3 1794 aa16.2■□□□□ 0.18
NUP54-202ENST00000502850 LRPPRCP42704 1394 aaKnown RBP16.2■□□□□ 0.18
NUP54-202ENST00000502850 CDCA8Q53HL2 280 aa16.2■□□□□ 0.18
NUP54-202ENST00000502850 SYNMO15061 1565 aa16.2■□□□□ 0.18
NUP54-202ENST00000502850 INSRP06213 1382 aa16.2■□□□□ 0.18
NUP54-202ENST00000502850 KIF3BO15066 747 aa16.19■□□□□ 0.18
NUP54-202ENST00000502850 TESK2Q96S53 571 aa16.19■□□□□ 0.18
NUP54-202ENST00000502850 PLPPR3Q6T4P5 718 aa16.19■□□□□ 0.18
NUP54-202ENST00000502850 NLRP13Q86W25 1043 aa16.19■□□□□ 0.18
NUP54-202ENST00000502850 PNISRQ8TF01 805 aaKnown RBP16.19■□□□□ 0.18
NUP54-202ENST00000502850 DIP2CQ9Y2E4 1556 aa16.18■□□□□ 0.18
NUP54-202ENST00000502850 DISP3Q9P2K9 1392 aa16.17■□□□□ 0.18
NUP54-202ENST00000502850 TSHZ2Q9NRE2 1034 aa16.17■□□□□ 0.18
NUP54-202ENST00000502850 ABCA6Q8N139 1617 aa16.16■□□□□ 0.18
NUP54-202ENST00000502850 KDM5AP29375 1690 aaKnown RBP16.15■□□□□ 0.18
NUP54-202ENST00000502850 NUDCQ9Y266 331 aa16.15■□□□□ 0.18
NUP54-202ENST00000502850 REREQ9P2R6 1566 aa16.15■□□□□ 0.18
NUP54-202ENST00000502850 ADGRB3O60242 1522 aa16.14■□□□□ 0.17
NUP54-202ENST00000502850 LMTK3Q96Q04 1460 aa16.14■□□□□ 0.17
NUP54-202ENST00000502850 PPP4R2Q9NY27 417 aa16.13■□□□□ 0.17
NUP54-202ENST00000502850 ZC3H13Q5T200 1668 aaKnown RBP16.13■□□□□ 0.17
NUP54-202ENST00000502850 MYO3AQ8NEV4 1616 aa16.13■□□□□ 0.17
NUP54-202ENST00000502850 MROH2AA6NES4 1674 aa16.13■□□□□ 0.17
NUP54-202ENST00000502850 PER1O15534 1290 aaPredicted RBP16.12■□□□□ 0.17
NUP54-202ENST00000502850 NRXN1Q9ULB1 1477 aa16.12■□□□□ 0.17
NUP54-202ENST00000502850 SETBP1Q9Y6X0 1596 aa16.12■□□□□ 0.17
NUP54-202ENST00000502850 AGLP35573 1532 aa16.11■□□□□ 0.17
NUP54-202ENST00000502850 CAMSAP1Q5T5Y3 1602 aa16.1■□□□□ 0.17
NUP54-202ENST00000502850 CEBPAP49715 358 aaPredicted RBP16.09■□□□□ 0.17
NUP54-202ENST00000502850 CNGB1Q14028 1251 aaPredicted RBP16.09■□□□□ 0.17
NUP54-202ENST00000502850 PPLO60437 1756 aa16.09■□□□□ 0.17
NUP54-202ENST00000502850 MYOM1P52179 1685 aa16.09■□□□□ 0.17
NUP54-202ENST00000502850 ABCC3O15438 1527 aa16.08■□□□□ 0.17
NUP54-202ENST00000502850 SETD1BQ9UPS6 1966 aaKnown RBP16.08■□□□□ 0.17
NUP54-202ENST00000502850 HSPA2P54652 639 aa16.08■□□□□ 0.16
NUP54-202ENST00000502850 MYT1Q01538 1121 aa16.08■□□□□ 0.16
NUP54-202ENST00000502850 PDE3BQ13370 1112 aa16.08■□□□□ 0.16
NUP54-202ENST00000502850 ILDR1Q86SU0 546 aaPredicted RBP16.08■□□□□ 0.16
NUP54-202ENST00000502850 PANK3Q9H999 370 aa16.08■□□□□ 0.16
NUP54-202ENST00000502850 UGGT1Q9NYU2 1555 aa16.08■□□□□ 0.16
NUP54-202ENST00000502850 ESF1Q9H501 851 aaKnown RBP16.07■□□□□ 0.16
NUP54-202ENST00000502850 ASXL1Q8IXJ9 1541 aa16.07■□□□□ 0.16
NUP54-202ENST00000502850 NPC1L1Q9UHC9 1359 aa16.06■□□□□ 0.16
NUP54-202ENST00000502850 SBNO2Q9Y2G9 1366 aa16.06■□□□□ 0.16
NUP54-202ENST00000502850 BLMP54132 1417 aaPredicted RBP16.06■□□□□ 0.16
NUP54-202ENST00000502850 RNF123Q5XPI4 1314 aa16.06■□□□□ 0.16
NUP54-202ENST00000502850 NPATQ14207 1427 aa16.05■□□□□ 0.16
NUP54-202ENST00000502850 RPGRIP1LQ68CZ1 1315 aa16.04■□□□□ 0.16
NUP54-202ENST00000502850 PREX1Q8TCU6 1659 aa16.04■□□□□ 0.16
NUP54-202ENST00000502850 KNSTRNQ9Y448 316 aa16.04■□□□□ 0.16
NUP54-202ENST00000502850 PIK3C2BO00750 1634 aa16.04■□□□□ 0.16
NUP54-202ENST00000502850 C3P01024 1663 aa16.03■□□□□ 0.16
NUP54-202ENST00000502850 IRX6P78412 446 aaPredicted RBP16.02■□□□□ 0.16
NUP54-202ENST00000502850 ARHGAP31Q2M1Z3 1444 aa16.01■□□□□ 0.15
NUP54-202ENST00000502850 PIK3C2GO75747 1445 aa16.01■□□□□ 0.15
NUP54-202ENST00000502850 CC2D1BQ5T0F9 858 aaKnown RBP16.01■□□□□ 0.15
NUP54-202ENST00000502850 NOS1P29475 1434 aa16■□□□□ 0.15
NUP54-202ENST00000502850 ERVK-7P63135 1459 aa15.99■□□□□ 0.15
NUP54-202ENST00000502850 QRICH2Q9H0J4 1663 aa15.98■□□□□ 0.15
NUP54-202ENST00000502850 ADGRF5Q8IZF2 1346 aa15.98■□□□□ 0.15
NUP54-202ENST00000502850 CFAP70Q5T0N1 1121 aa15.97■□□□□ 0.15
NUP54-202ENST00000502850 AMER1Q5JTC6 1135 aaPredicted RBP15.96■□□□□ 0.15
NUP54-202ENST00000502850 GGT6Q6P531 493 aa15.96■□□□□ 0.15
NUP54-202ENST00000502850 ADGRB1O14514 1584 aa15.96■□□□□ 0.14
NUP54-202ENST00000502850 ZMYM3Q14202 1370 aa15.95■□□□□ 0.14
NUP54-202ENST00000502850 CLTCQ00610 1675 aaKnown RBP15.94■□□□□ 0.14
NUP54-202ENST00000502850 CFAP65Q6ZU64 1925 aaKnown RBP15.94■□□□□ 0.14
NUP54-202ENST00000502850 CENPJQ9HC77 1338 aaPredicted RBP15.94■□□□□ 0.14
NUP54-202ENST00000502850 PPP6R1Q9UPN7 881 aa15.94■□□□□ 0.14
NUP54-202ENST00000502850 NEXMIFQ5QGS0 1516 aa15.93■□□□□ 0.14
NUP54-202ENST00000502850 USP32Q8NFA0 1604 aa15.93■□□□□ 0.14
NUP54-202ENST00000502850 PPP2R1AP30153 589 aa15.93■□□□□ 0.14
NUP54-202ENST00000502850 C14orf93Q9H972 538 aaKnown RBP15.93■□□□□ 0.14
NUP54-202ENST00000502850 RBM19Q9Y4C8 960 aaKnown RBP15.93■□□□□ 0.14
NUP54-202ENST00000502850 STRCQ7RTU9 1775 aa15.92■□□□□ 0.14
NUP54-202ENST00000502850 CHGAP10645 457 aaKnown RBP15.92■□□□□ 0.14
NUP54-202ENST00000502850 WDR43Q15061 677 aaKnown RBP eCLIP15.92■□□□□ 0.14
NUP54-202ENST00000502850 FBXO41Q8TF61 875 aa15.92■□□□□ 0.14
NUP54-202ENST00000502850 ZFYVE9O95405 1425 aa15.91■□□□□ 0.14
NUP54-202ENST00000502850 DMRT2Q9Y5R5 561 aa15.9■□□□□ 0.14
NUP54-202ENST00000502850 ARHGEF28Q8N1W1 1705 aaKnown RBP15.9■□□□□ 0.14
NUP54-202ENST00000502850 VGFO15240 615 aaPredicted RBP15.9■□□□□ 0.14
NUP54-202ENST00000502850 PUS7Q96PZ0 661 aaKnown RBP15.9■□□□□ 0.14
NUP54-202ENST00000502850 SLC52A1Q9NWF4 448 aa15.9■□□□□ 0.14
NUP54-202ENST00000502850 RCAN3Q9UKA8 241 aa15.9■□□□□ 0.14
NUP54-202ENST00000502850 RRP1P56182 461 aaKnown RBP15.89■□□□□ 0.13
NUP54-202ENST00000502850 B4GALNT3Q6L9W6 998 aa15.88■□□□□ 0.13
NUP54-202ENST00000502850 CCDC136Q96JN2 1154 aa15.87■□□□□ 0.13
NUP54-202ENST00000502850 NGEFQ8N5V2 710 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms