RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 DPY19L2Q6NUT2 758 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 UNC5CLQ8IV45 518 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 SLC17A8Q8NDX2 589 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 KDM2BQ8NHM5 1336 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 DIP2BQ9P265 1576 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 USP19O94966 1318 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 IQSEC2Q5JU85 1478 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 ABT1Q9ULW3 272 aaKnown RBP6.95□□□□□ -1.3
USP54-216ENST00000498143 HDAC9Q9UKV0 1011 aa6.95□□□□□ -1.3
USP54-216ENST00000498143 TOP2AP11388 1531 aaKnown RBP6.94□□□□□ -1.3
USP54-216ENST00000498143 FAM182BQ5T319 152 aa6.94□□□□□ -1.3
USP54-216ENST00000498143 BCS1LQ9Y276 419 aa6.94□□□□□ -1.3
USP54-216ENST00000498143 EZH2Q15910 746 aaKnown RBP6.94□□□□□ -1.3
USP54-216ENST00000498143 FAM161AQ3B820 660 aa6.94□□□□□ -1.3
USP54-216ENST00000498143 MINK1Q8N4C8 1332 aaPredicted RBP6.94□□□□□ -1.3
USP54-216ENST00000498143 BRD2P25440 801 aaKnown RBP6.94□□□□□ -1.3
USP54-216ENST00000498143 TMEM132AQ24JP5 1023 aa6.94□□□□□ -1.3
USP54-216ENST00000498143 ERICH6BQ5W0A0 696 aa6.94□□□□□ -1.3
USP54-216ENST00000498143 DIEXFQ68CQ4 756 aaKnown RBP6.94□□□□□ -1.3
USP54-216ENST00000498143 NEO1Q92859 1461 aa6.93□□□□□ -1.3
USP54-216ENST00000498143 COL17A1Q9UMD9 1497 aaPredicted RBP6.93□□□□□ -1.3
USP54-216ENST00000498143 ZFYVE16Q7Z3T8 1539 aa6.93□□□□□ -1.3
USP54-216ENST00000498143 TOM1L2Q6ZVM7 507 aa6.93□□□□□ -1.3
USP54-216ENST00000498143 FHDC1Q9C0D6 1143 aaPredicted RBP6.93□□□□□ -1.3
USP54-216ENST00000498143 RGS17Q9UGC6 210 aaPredicted RBP6.93□□□□□ -1.3
USP54-216ENST00000498143 CLASP1Q7Z460 1538 aa6.93□□□□□ -1.3
USP54-216ENST00000498143 PEG3Q9GZU2 1588 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 NEUROD1Q13562 356 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 VSIG10Q8N0Z9 540 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 BLMP54132 1417 aaPredicted RBP6.92□□□□□ -1.3
USP54-216ENST00000498143 WIZO95785 1651 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 AMOTL2Q9Y2J4 779 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 EFCAB5A4FU69 1503 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 GPRASP1Q5JY77 1395 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 RSPH4AQ5TD94 716 aa6.92□□□□□ -1.3
USP54-216ENST00000498143 RIMS1Q86UR5 1692 aaKnown RBP6.92□□□□□ -1.3
USP54-216ENST00000498143 SAFB2Q14151 953 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP54-216ENST00000498143 TNNT2P45379 298 aaPredicted RBP6.91□□□□□ -1.3
USP54-216ENST00000498143 CTCFP49711 727 aaPredicted RBP6.91□□□□□ -1.3
USP54-216ENST00000498143 CHIC2Q9UKJ5 165 aa6.91□□□□□ -1.3
USP54-216ENST00000498143 LTBP4Q8N2S1 1624 aa6.91□□□□□ -1.3
USP54-216ENST00000498143 WDHD1O75717 1129 aaPredicted RBP6.9□□□□□ -1.3
USP54-216ENST00000498143 ARHGAP5Q13017 1502 aa6.9□□□□□ -1.31
USP54-216ENST00000498143 HSPA1AP0DMV8 641 aaKnown RBP6.9□□□□□ -1.31
USP54-216ENST00000498143 HSPA1BP0DMV9 641 aaKnown RBP6.9□□□□□ -1.31
USP54-216ENST00000498143 CPS1P31327 1500 aa6.9□□□□□ -1.31
USP54-216ENST00000498143 NCOA1Q15788 1441 aa6.89□□□□□ -1.31
USP54-216ENST00000498143 FCHSD2O94868 740 aa6.89□□□□□ -1.31
USP54-216ENST00000498143 BTG4Q9NY30 223 aa6.89□□□□□ -1.31
USP54-216ENST00000498143 MAGI3Q5TCQ9 1506 aa6.89□□□□□ -1.31
USP54-216ENST00000498143 MKRN1Q9UHC7 482 aaKnown RBP6.88□□□□□ -1.31
USP54-216ENST00000498143 WASHC2AQ641Q2 1341 aa6.88□□□□□ -1.31
USP54-216ENST00000498143 SYT17Q9BSW7 474 aa6.88□□□□□ -1.31
USP54-216ENST00000498143 SETD1BQ9UPS6 1966 aaKnown RBP6.88□□□□□ -1.31
USP54-216ENST00000498143 NINLQ9Y2I6 1382 aa6.88□□□□□ -1.31
USP54-216ENST00000498143 DDB1Q16531 1140 aa6.88□□□□□ -1.31
USP54-216ENST00000498143 TOMM70O94826 608 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 KIF21BO75037 1637 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 EXOC5O00471 708 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 EAPPQ56P03 285 aaPredicted RBP6.87□□□□□ -1.31
USP54-216ENST00000498143 ABCA10Q8WWZ4 1543 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 KRT28Q7Z3Y7 464 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 MTFR1LQ9H019 292 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 G3V3G9 751 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 FAM135BQ49AJ0 1406 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 DCAF8Q5TAQ9 597 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 SMC1BQ8NDV3 1235 aa6.87□□□□□ -1.31
USP54-216ENST00000498143 ZNF316A6NFI3 1004 aaPredicted RBP6.86□□□□□ -1.31
USP54-216ENST00000498143 MADDQ8WXG6 1647 aa6.86□□□□□ -1.31
USP54-216ENST00000498143 ZC3H6P61129 1189 aaKnown RBP6.86□□□□□ -1.31
USP54-216ENST00000498143 MAGI2Q86UL8 1455 aa6.86□□□□□ -1.31
USP54-216ENST00000498143 CAMSAP1Q5T5Y3 1602 aa6.86□□□□□ -1.31
USP54-216ENST00000498143 DDX17Q92841 729 aaKnown RBP6.86□□□□□ -1.31
USP54-216ENST00000498143 RRP7BPQ9NSQ0 103 aa6.85□□□□□ -1.31
USP54-216ENST00000498143 GTF2E1P29083 439 aaPredicted RBP6.85□□□□□ -1.31
USP54-216ENST00000498143 CNGB1Q14028 1251 aaPredicted RBP6.85□□□□□ -1.31
USP54-216ENST00000498143 SLC52A1Q9NWF4 448 aa6.85□□□□□ -1.31
USP54-216ENST00000498143 PRDM2Q13029 1718 aa6.85□□□□□ -1.31
USP54-216ENST00000498143 DLL1O00548 723 aa6.85□□□□□ -1.31
USP54-216ENST00000498143 ANO8Q9HCE9 1232 aaPredicted RBP6.85□□□□□ -1.31
USP54-216ENST00000498143 AK7Q96M32 723 aa6.85□□□□□ -1.31
USP54-216ENST00000498143 LRRC9Q6ZRR7 1453 aa6.84□□□□□ -1.31
USP54-216ENST00000498143 IGF1RP08069 1367 aa6.84□□□□□ -1.31
USP54-216ENST00000498143 ECE1P42892 770 aa6.84□□□□□ -1.32
USP54-216ENST00000498143 CHMP4AQ9BY43 222 aa6.84□□□□□ -1.32
USP54-216ENST00000498143 UHRF1BP1LA0JNW5 1464 aa6.83□□□□□ -1.32
USP54-216ENST00000498143 NLRP2Q9NX02 1062 aa6.83□□□□□ -1.32
USP54-216ENST00000498143 COL13A1Q5TAT6 717 aaPredicted RBP6.83□□□□□ -1.32
USP54-216ENST00000498143 DHX57Q6P158 1386 aaKnown RBP6.83□□□□□ -1.32
USP54-216ENST00000498143 CCDC136Q96JN2 1154 aa6.83□□□□□ -1.32
USP54-216ENST00000498143 CABP2Q9NPB3 220 aa6.83□□□□□ -1.32
USP54-216ENST00000498143 BRINP3Q76B58 766 aa6.82□□□□□ -1.32
USP54-216ENST00000498143 CABLES1Q8TDN4 633 aa6.82□□□□□ -1.32
USP54-216ENST00000498143 RAPGEF2Q9Y4G8 1499 aa6.82□□□□□ -1.32
USP54-216ENST00000498143 LMOD1P29536 600 aaPredicted RBP6.82□□□□□ -1.32
USP54-216ENST00000498143 ZNF518AQ6AHZ1 1483 aa6.82□□□□□ -1.32
USP54-216ENST00000498143 ZNF408Q9H9D4 720 aa6.82□□□□□ -1.32
USP54-216ENST00000498143 ZNF330Q9Y3S2 320 aaPredicted RBP6.82□□□□□ -1.32
USP54-216ENST00000498143 DHX37Q8IY37 1157 aaKnown RBP6.81□□□□□ -1.32
USP54-216ENST00000498143 NUTM2GQ5VZR2 741 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms